BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0112.0030.p (165 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KG51.1 B3KG51_9BACI Putative uncharacterized protein 268 9e-71 B1DFM7.1 B1DFM7_9BACL Putative uncharacterized protein 229 5e-59 C0ZBC4.1 C0ZBC4_BREBN Putative uncharacterized protein 175 1e-42 C2W5Y5.1 C2W5Y5_BACCE Putative uncharacterized protein 103 3e-21 A7GN05.1 A7GN05_BACCN Putative uncharacterized protein 102 1e-20 >B3KG51.1 B3KG51_9BACI Putative uncharacterized protein Length = 168 Score = 268 bits (686), Expect = 9e-71, Method: Compositional matrix adjust. Identities = 126/164 (76%), Positives = 146/164 (89%) Query: 1 MSAANVQKLCETTREKLKSVIGKMEIFLNQHALPQLVTEEDEETLLFYQGFLSDLRHLLV 60 M A N+QKLC +REKLKS I ME FLN+HAL QLVTE+DEET+ FY+GFLSD+RHLLV Sbjct: 1 MPADNLQKLCSESREKLKSAISIMETFLNEHALSQLVTEQDEETVHFYKGFLSDVRHLLV 60 Query: 61 FSEMSYEKLGVALRRATFDDAFAQKALYNVYHFGVNNFFYPKNESYSEDGRYAYTGQDAI 120 FSE+SYEKLGV RR FD FA+KALYN+YH VN+FFYPKNESYSEDGRYAYTGQDAI Sbjct: 61 FSEVSYEKLGVVQRRPNFDIDFAEKALYNLYHRCVNSFFYPKNESYSEDGRYAYTGQDAI 120 Query: 121 RFRKKPVRPARDIILDITKVYEELRDDLSYYENDYLTEKRMQNQ 164 RFRKKPVRPARD+I++ITK+YEELRDDL+YYE+DYLTE+RMQ++ Sbjct: 121 RFRKKPVRPARDVIMNITKIYEELRDDLAYYESDYLTERRMQSE 164 >B1DFM7.1 B1DFM7_9BACL Putative uncharacterized protein Length = 166 Score = 229 bits (585), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 111/165 (67%), Positives = 134/165 (81%), Gaps = 1/165 (0%) Query: 1 MSAANVQKLCETTREKLKSVIGKMEIFLNQHALPQLVTEE-DEETLLFYQGFLSDLRHLL 59 M + N + L ET+R KLK I ++E FLNQ++L QLV EE +E FY+G LSDLRHLL Sbjct: 1 MPSTNAKSLSETSRTKLKDAINQLESFLNQYSLNQLVGEETGDEAQTFYKGLLSDLRHLL 60 Query: 60 VFSEMSYEKLGVALRRATFDDAFAQKALYNVYHFGVNNFFYPKNESYSEDGRYAYTGQDA 119 VFSE+S EKLGV LRR FD+ FA++ALY+VYH VN FFYPKNE YSEDGRYAYTGQDA Sbjct: 61 VFSEVSVEKLGVLLRRPNFDNDFAERALYDVYHQCVNAFFYPKNECYSEDGRYAYTGQDA 120 Query: 120 IRFRKKPVRPARDIILDITKVYEELRDDLSYYENDYLTEKRMQNQ 164 IRFR KPVR ARDI+L ++K+YEELRD+L+YYENDY+T++RMQ Q Sbjct: 121 IRFRFKPVRHARDIVLSVSKIYEELRDELAYYENDYMTQRRMQGQ 165 >C0ZBC4.1 C0ZBC4_BREBN Putative uncharacterized protein Length = 170 Score = 175 bits (444), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 87/166 (52%), Positives = 119/166 (71%), Gaps = 2/166 (1%) Query: 1 MSAANVQKLCETTREKLKSVIGKMEIFLNQHALPQLVTE--EDEETLLFYQGFLSDLRHL 58 MSA ++++LCE T KLK V ++E FLNQ L LV+ + EE +Y+ +LSDLRHL Sbjct: 1 MSATHLKQLCEETYTKLKKVSMEVERFLNQVTLSGLVSASGDPEEFETYYRNYLSDLRHL 60 Query: 59 LVFSEMSYEKLGVALRRATFDDAFAQKALYNVYHFGVNNFFYPKNESYSEDGRYAYTGQD 118 LV+ E +YE+LGV+LRRA F + FA++ LY VYH +NNF+YPK E Y EDGR AYTGQD Sbjct: 61 LVYCENAYERLGVSLRRARFHEEFAEEVLYQVYHSCINNFYYPKGEVYEEDGRLAYTGQD 120 Query: 119 AIRFRKKPVRPARDIILDITKVYEELRDDLSYYENDYLTEKRMQNQ 164 I FRK+ V + L +++V+E+LR+DL YYE DY+ +K+MQ + Sbjct: 121 CIIFRKQVVPELEQLTLSLSRVFEQLRNDLQYYETDYIAKKQMQQE 166 >C2W5Y5.1 C2W5Y5_BACCE Putative uncharacterized protein Length = 159 Score = 103 bits (258), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 54/141 (38%), Positives = 80/141 (56%) Query: 17 LKSVIGKMEIFLNQHALPQLVTEEDEETLLFYQGFLSDLRHLLVFSEMSYEKLGVALRRA 76 L+ I M F+N H LP L+ E E +Y+G LS LR LLVF E + V L Sbjct: 13 LEEAIHLMTDFVNYHTLPSLLEESPEGNKHYYEGLLSALRRLLVFCEEGLDACLVLLSSQ 72 Query: 77 TFDDAFAQKALYNVYHFGVNNFFYPKNESYSEDGRYAYTGQDAIRFRKKPVRPARDIILD 136 F A+K LY +YH + FF PK++ + E+ R AYTG+++I F++ P R I+ + Sbjct: 73 PFRKTAAEKTLYKIYHQVIAEFFSPKSDQWYENSRSAYTGKNSIVFQQIPPRSIEKIMQE 132 Query: 137 ITKVYEELRDDLSYYENDYLT 157 + ++ +R++L YYE DY T Sbjct: 133 LEGKFQTMREELEYYETDYQT 153 >A7GN05.1 A7GN05_BACCN Putative uncharacterized protein Length = 163 Score = 102 bits (253), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 53/158 (33%), Positives = 87/158 (55%) Query: 1 MSAANVQKLCETTREKLKSVIGKMEIFLNQHALPQLVTEEDEETLLFYQGFLSDLRHLLV 60 MS + V+ E L+ VI M ++N H+LP L+ E +Y+G L+ +R LLV Sbjct: 1 MSNSMVENQTEQVSAFLEEVIALMTNYVNYHSLPSLLKEAPTGDKNYYEGLLAAVRRLLV 60 Query: 61 FSEMSYEKLGVALRRATFDDAFAQKALYNVYHFGVNNFFYPKNESYSEDGRYAYTGQDAI 120 F E + + L F A+K LY +YH + FF PKN+ + E+ R AYTG+++I Sbjct: 61 FCEEGLDACLILLNSQPFRKTAAEKTLYKIYHQVIAEFFSPKNDQWYENSRSAYTGKNSI 120 Query: 121 RFRKKPVRPARDIILDITKVYEELRDDLSYYENDYLTE 158 F++ P ++ ++ ++ +R++L YYE DY T+ Sbjct: 121 VFQRTPPSSMVKVMKELEGKFQTMREELEYYETDYQTK 158 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.136 0.385 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 950,579,550 Number of extensions: 39049204 Number of successful extensions: 89305 Number of sequences better than 1.0e-05: 88 Number of HSP's gapped: 89300 Number of HSP's successfully gapped: 88 Length of query: 165 Length of database: 3,060,696,203 Length adjustment: 125 Effective length of query: 40 Effective length of database: 1,883,069,328 Effective search space: 75322773120 Effective search space used: 75322773120 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 125 (52.8 bits)