BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0112.0028.p (176 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value A8FAD4.1 A8FAD4_BACP2 GntR family transcriptional regulator 143 5e-33 B4APD3.1 B4APD3_BACPU GntR family transcriptional regulator 143 6e-33 A7FZJ9.1 A7FZJ9_CLOB1 Transcriptional regulator, GntR family/ami... 141 2e-32 A5I3V5.1 A5I3V5_CLOBH Transcriptional regulator, GntR family/ami... 141 2e-32 B5UY90.1 B5UY90_BACCE GntR family transcriptional regulator 140 5e-32 >A8FAD4.1 A8FAD4_BACP2 GntR family transcriptional regulator Length = 492 Score = 143 bits (361), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 69/161 (42%), Positives = 101/161 (62%), Gaps = 1/161 (0%) Query: 1 MDEDGHVVYMKSFSKVIAPGFRIACVAAEGNILSRLIAAKSASDLGSPLLTQGAVLPFI- 59 +D DGHV+Y++ SK +APG RI + A G+I +RL+AAK+ +DLGSPLLTQ A+LPF+ Sbjct: 309 LDHDGHVIYLRGLSKTLAPGCRIGIITASGSIFNRLLAAKANNDLGSPLLTQKAILPFLT 368 Query: 60 ARKYEDYXXXXXXXXXXXMEKAAGLLKQYAPPGVTWVLPEGGLNLWLQLPSASGIAQLHA 119 ++K D+ + +L ++AP VTW +P+GGLNLWL PS L Sbjct: 369 SKKMIDHTKKLRTALMVRRDLMIDVLSKHAPKDVTWQIPQGGLNLWLSFPSWVDTRALLH 428 Query: 120 LAEQEGISFLPGDVCYAGDLPSRHIRLCYSQMTEADMEQGL 160 A ++ I+FLPG VCY G+ +IRL +S + E + +G+ Sbjct: 429 EARKQQITFLPGSVCYPGEPKQNYIRLSFSYVNEKALIEGV 469 >B4APD3.1 B4APD3_BACPU GntR family transcriptional regulator Length = 492 Score = 143 bits (361), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 69/161 (42%), Positives = 100/161 (62%), Gaps = 1/161 (0%) Query: 1 MDEDGHVVYMKSFSKVIAPGFRIACVAAEGNILSRLIAAKSASDLGSPLLTQGAVLPFI- 59 +D DGHV+Y++ SK +APG RI + A G+I +RL+AAK+ +DLGSPLLTQ A+LPF+ Sbjct: 309 LDHDGHVIYLRGLSKTLAPGCRIGIITASGSIFNRLLAAKANNDLGSPLLTQKAILPFLT 368 Query: 60 ARKYEDYXXXXXXXXXXXMEKAAGLLKQYAPPGVTWVLPEGGLNLWLQLPSASGIAQLHA 119 ++K D+ + +L + AP VTW +P+GGLNLWL PS L Sbjct: 369 SKKMIDHTKKLRTALKVRRDLMIDVLTKNAPKDVTWQIPQGGLNLWLSFPSWVDTRALLH 428 Query: 120 LAEQEGISFLPGDVCYAGDLPSRHIRLCYSQMTEADMEQGL 160 A ++ I+FLPG VCY G+ +IRL +S + E + +G+ Sbjct: 429 EARKQQITFLPGSVCYPGEPKQNYIRLSFSYVNEKALTEGV 469 >A7FZJ9.1 A7FZJ9_CLOB1 Transcriptional regulator, GntR family/aminotransferase, classes I and II Length = 497 Score = 141 bits (355), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 64/162 (39%), Positives = 100/162 (61%), Gaps = 2/162 (1%) Query: 1 MDEDGHVVYMKSFSKVIAPGFRIACVAAEGNILSRLIAAKSASDLGSPLLTQGAVLPFI- 59 MD DGHVVY+KS SK++ P +R+A + +E +ILSRLIAAKS DLG+ +L Q ++ FI Sbjct: 313 MDTDGHVVYIKSLSKILGPSYRLAVIISESSILSRLIAAKSNHDLGTSVLIQKTIINFIQ 372 Query: 60 ARKYEDYXXXXXXXXXXXMEKAAGLLKQYAPPGVTWVLPEGGLNLWLQLPSASGIAQLHA 119 + K Y +K LLK +AP G+ W +PEGG+N+W+ LP + +L + Sbjct: 373 SNKITYYIENLNKQLVKRRDKVISLLKSHAPSGMKWAIPEGGINIWVTLPKNFNVEKLLS 432 Query: 120 LA-EQEGISFLPGDVCYAGDLPSRHIRLCYSQMTEADMEQGL 160 + + ISFLPG +CY ++ ++R+C++ + E +E + Sbjct: 433 YSITTKNISFLPGTICYPNEVEFNNLRICFTYLDEEFIEDTI 474 >A5I3V5.1 A5I3V5_CLOBH Transcriptional regulator, GntR family/aminotransferase, classes I and II Length = 497 Score = 141 bits (355), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 64/162 (39%), Positives = 100/162 (61%), Gaps = 2/162 (1%) Query: 1 MDEDGHVVYMKSFSKVIAPGFRIACVAAEGNILSRLIAAKSASDLGSPLLTQGAVLPFI- 59 MD DGHVVY+KS SK++ P +R+A + +E +ILSRLIAAKS DLG+ +L Q ++ FI Sbjct: 313 MDTDGHVVYIKSLSKILGPSYRLAVIISESSILSRLIAAKSNHDLGTSVLIQKTIINFIQ 372 Query: 60 ARKYEDYXXXXXXXXXXXMEKAAGLLKQYAPPGVTWVLPEGGLNLWLQLPSASGIAQLHA 119 + K Y +K LLK +AP G+ W +PEGG+N+W+ LP + +L + Sbjct: 373 SNKITYYIENLNKQLVKRRDKVISLLKSHAPSGMKWAIPEGGINIWVTLPKNFNVEKLLS 432 Query: 120 LA-EQEGISFLPGDVCYAGDLPSRHIRLCYSQMTEADMEQGL 160 + + ISFLPG +CY ++ ++R+C++ + E +E + Sbjct: 433 YSITTKNISFLPGTICYPNEVEFNNLRICFTYLDEEFIEDTI 474 >B5UY90.1 B5UY90_BACCE GntR family transcriptional regulator Length = 492 Score = 140 bits (353), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 67/164 (40%), Positives = 103/164 (62%), Gaps = 1/164 (0%) Query: 1 MDEDGHVVYMKSFSKVIAPGFRIACVAAEGNILSRLIAAKSASDLGSPLLTQGAVLPFI- 59 +D+ GHV+Y+K SK APG RI + A G+I +RL+AAK+ +DLGSPLLTQ +LPFI Sbjct: 309 LDDSGHVIYLKGLSKTFAPGCRIGVLVASGSIFNRLLAAKANADLGSPLLTQKMILPFIK 368 Query: 60 ARKYEDYXXXXXXXXXXXMEKAAGLLKQYAPPGVTWVLPEGGLNLWLQLPSASGIAQLHA 119 + K ++ + LL +YAP V+W PEGGLNLW+ LP + Sbjct: 369 SEKSMEHIKKLRTALKLRRDLVLDLLSKYAPSEVSWYTPEGGLNLWISLPEWVDTNSILL 428 Query: 120 LAEQEGISFLPGDVCYAGDLPSRHIRLCYSQMTEADMEQGLRLF 163 A+++ ++FLPG CY +L + H+RL +S M+E ++++G+++ Sbjct: 429 EAQKKKVTFLPGSACYPVELETHHMRLSFSYMSEQELKEGVKVL 472 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.321 0.138 0.412 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,008,445,630 Number of extensions: 37769761 Number of successful extensions: 76365 Number of sequences better than 1.0e-05: 1605 Number of HSP's gapped: 75365 Number of HSP's successfully gapped: 1605 Length of query: 176 Length of database: 3,060,696,203 Length adjustment: 126 Effective length of query: 50 Effective length of database: 1,873,648,313 Effective search space: 93682415650 Effective search space used: 93682415650 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 126 (53.1 bits)