BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0112.0027.p (285 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B4APD3.1 B4APD3_BACPU GntR family transcriptional regulator 234 6e-60 A8FAD4.1 A8FAD4_BACP2 GntR family transcriptional regulator 234 6e-60 A3IE74.1 A3IE74_9BACI Transcriptional regulator, GntR family pro... 232 2e-59 C1FQH6.1 C1FQH6_CLOBJ Transcriptional regulator, GntR family/ami... 223 1e-56 B1IGS9.1 B1IGS9_CLOBK Transcriptional regulator, GntR family/ami... 222 2e-56 >B4APD3.1 B4APD3_BACPU GntR family transcriptional regulator Length = 492 Score = 234 bits (598), Expect = 6e-60, Method: Compositional matrix adjust. Identities = 122/277 (44%), Positives = 168/277 (60%), Gaps = 6/277 (2%) Query: 1 MHIDLLRSGSKPLPQQISDTLAQRITSGLLQPGFRLPSVRGLAATLKVSQVTVSKAYADL 60 MHID+ R L QI ++ I SGLLQ G +LP+VR LA L VS VT +KAY L Sbjct: 1 MHIDIHRHSDTSLSNQIYFSIIDHIQSGLLQQGDKLPTVRDLAKQLNVSLVTAAKAYTRL 60 Query: 61 EKKGHLICSQGKGCFVAEHERSG-----PGNGADWRDGYEDYLPRAQLWRNFGYSEVKYP 115 + G+L QGKG FV E ++ DW+ DYLPR+Q + + Y E Sbjct: 61 KDDGYLTTVQGKGTFVDELQKQSEIPVPSSTSFDWQLSIPDYLPRSQ-FAQYHYVEEAIN 119 Query: 116 FHLAAIHEDLLPLGPISTTMAALVTGQPELMASYGNFQGDPELREIMRRHLQPRGIHLAT 175 + I LLP + M ++ P++M+ YG QGD +LR++++ L+ + Sbjct: 120 LSSSMIDPGLLPNRYLEKEMQHVLARHPQIMSKYGEIQGDLQLRQVIQSFLEKLDVPSTP 179 Query: 176 SDLMITSGTQQGIDLVARTFVGPGDTVYLEAPSYTGAIDVFAGRGAEMIFVPMDHEGMRV 235 ++++TSG+QQG+DLVAR F+GP D V +EAP+Y GAIDVF GRGA +I VP+DHEGM + Sbjct: 180 ENILVTSGSQQGLDLVARAFIGPDDVVVMEAPTYPGAIDVFMGRGARIITVPVDHEGMNM 239 Query: 236 DVLTRLCDARPPKLIYTNPTFQNPSGVTMSMARRQRL 272 L +CD PKLIYT PTF +P+G +MSM RR++L Sbjct: 240 KQLQSICDKYKPKLIYTIPTFHSPTGASMSMKRRKQL 276 >A8FAD4.1 A8FAD4_BACP2 GntR family transcriptional regulator Length = 492 Score = 234 bits (597), Expect = 6e-60, Method: Compositional matrix adjust. Identities = 122/277 (44%), Positives = 168/277 (60%), Gaps = 6/277 (2%) Query: 1 MHIDLLRSGSKPLPQQISDTLAQRITSGLLQPGFRLPSVRGLAATLKVSQVTVSKAYADL 60 MHID+ R L QI ++ I SGLLQ G +LP+VR LA L VS VT +KAY L Sbjct: 1 MHIDIHRHSDTSLSNQIYFSIIDHIQSGLLQQGDKLPTVRDLAKQLNVSLVTAAKAYTRL 60 Query: 61 EKKGHLICSQGKGCFVAEHERSG-----PGNGADWRDGYEDYLPRAQLWRNFGYSEVKYP 115 + G+L QGKG FV E ++ DW+ DYLPR+Q + + Y E Sbjct: 61 KDDGYLTTVQGKGTFVDELQKQSEIPVPSSTSFDWQLSIPDYLPRSQ-FAQYHYVEEAIN 119 Query: 116 FHLAAIHEDLLPLGPISTTMAALVTGQPELMASYGNFQGDPELREIMRRHLQPRGIHLAT 175 + I LLP + M ++ P++M+ YG QGD +LR++++ L+ + Sbjct: 120 LSSSMIDPGLLPNRYLEKEMQHVLARHPQIMSKYGEIQGDLQLRQVIQSFLEKLDVPSTP 179 Query: 176 SDLMITSGTQQGIDLVARTFVGPGDTVYLEAPSYTGAIDVFAGRGAEMIFVPMDHEGMRV 235 ++++TSG+QQG+DLVAR F+GP D V +EAP+Y GAIDVF GRGA +I VP+DHEGM + Sbjct: 180 ENILVTSGSQQGLDLVARAFIGPDDVVVMEAPTYPGAIDVFMGRGARIITVPVDHEGMNM 239 Query: 236 DVLTRLCDARPPKLIYTNPTFQNPSGVTMSMARRQRL 272 L +CD PKLIYT PTF +P+G +MSM RR++L Sbjct: 240 KQLQSICDKYKPKLIYTIPTFHSPTGASMSMKRRKQL 276 >A3IE74.1 A3IE74_9BACI Transcriptional regulator, GntR family protein Length = 531 Score = 232 bits (592), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 120/276 (43%), Positives = 172/276 (62%), Gaps = 5/276 (1%) Query: 1 MHIDLLRSGSKPLPQQISDTLAQRITSGLLQPGFRLPSVRGLAATLKVSQVTVSKAYADL 60 M I L R + L QIS+ + ++I SG LQ G +LPS+R + +VS VT+SKAYA L Sbjct: 41 MKIKLNRQSDQTLIHQISNIMTEKIRSGFLQEGSQLPSIRSFSKENQVSPVTISKAYALL 100 Query: 61 EKKGHLICSQGKGCFVAEHERSG---PGNGADWRDGYEDYLPRAQLWRNFGYSEVKYPFH 117 E+ G++ GKG FV ++E +W+ DY+ R+Q N G +E F Sbjct: 101 ERNGYIQVVHGKGAFVRKNELGSIHVSQRNYNWQLAIPDYIQRSQSMLNKG-TEYALKFS 159 Query: 118 LAAIHEDLLPLGPISTTMAALVTGQPELMASYGNFQGDPELREIMRRHLQPRG-IHLATS 176 A IH LLP ++ + A++ P+++ YG QGD ++R+ +R ++Q G I Sbjct: 160 SATIHPGLLPSVYLTNEIVAILLADPQIVTRYGAVQGDEDVRKAIRDYVQKYGDIETTPQ 219 Query: 177 DLMITSGTQQGIDLVARTFVGPGDTVYLEAPSYTGAIDVFAGRGAEMIFVPMDHEGMRVD 236 ++++T+G QQGID+VARTF+GPGD V EAP+YT AIDVF RGA +I +P+D EGM+ Sbjct: 220 EIIVTNGVQQGIDVVARTFIGPGDIVITEAPTYTAAIDVFRNRGAHIIPIPVDAEGMQTT 279 Query: 237 VLTRLCDARPPKLIYTNPTFQNPSGVTMSMARRQRL 272 +L LC ++ PKLIYTNPTFQNP+G +S RR+ L Sbjct: 280 ILATLCLSKQPKLIYTNPTFQNPTGTVLSETRRREL 315 >C1FQH6.1 C1FQH6_CLOBJ Transcriptional regulator, GntR family/aminotransferase, classes I and II Length = 497 Score = 223 bits (569), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 113/284 (39%), Positives = 168/284 (59%), Gaps = 8/284 (2%) Query: 1 MHIDLLRSGSKPLPQQISDTLAQRITSGLLQPGFRLPSVRGLAATLKVSQVTVSKAYADL 60 M+I + ++ + QQ+ + RI SG ++ G +LPS+R LA L +S +T+ KAY +L Sbjct: 1 MNIKIDKTSLITITQQLVHYFSDRIMSGFIKAGQKLPSIRSLAKELGISPMTIIKAYNNL 60 Query: 61 EKKGHLICSQGKGCFVAEHERSGPGNGADWRDGYE------DYLPRAQLWRN--FGYSEV 112 E+ G + QGKG +V E + N +D ++ DYL R+Q N YS Sbjct: 61 EQNGLVTTIQGKGTYVNERNSTVKSNNITEKDSFQWQMSVPDYLSRSQFRYNPNLSYSND 120 Query: 113 KYPFHLAAIHEDLLPLGPISTTMAALVTGQPELMASYGNFQGDPELREIMRRHLQPRGIH 172 Y +A+++ LLP I L+ +L++ Y QGD E R IM ++L+ + I Sbjct: 121 YYNLSVASLNHKLLPTKTILKDSLGLIQNDIKLLSQYPPAQGDYEFRNIMSQYLRSKEIA 180 Query: 173 LATSDLMITSGTQQGIDLVARTFVGPGDTVYLEAPSYTGAIDVFAGRGAEMIFVPMDHEG 232 + ++++TSG+QQGI L+A TF+GPGD V +EAP+Y GAID+F RGA ++ VP+D EG Sbjct: 181 TSPENILVTSGSQQGISLIASTFIGPGDIVVMEAPTYPGAIDLFKCRGAVILTVPVDSEG 240 Query: 233 MRVDVLTRLCDARPPKLIYTNPTFQNPSGVTMSMARRQRLGGVS 276 MR D+L LCD PKLIYT P F NP+G +MS R+ L ++ Sbjct: 241 MRTDILMNLCDKHSPKLIYTIPNFHNPTGYSMSSKRKAELLDIA 284 >B1IGS9.1 B1IGS9_CLOBK Transcriptional regulator, GntR family/aminotransferase, classes I and II Length = 497 Score = 222 bits (566), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 112/284 (39%), Positives = 167/284 (58%), Gaps = 8/284 (2%) Query: 1 MHIDLLRSGSKPLPQQISDTLAQRITSGLLQPGFRLPSVRGLAATLKVSQVTVSKAYADL 60 M+I + ++ + QQ+ + RI SG ++ G +LPS+R LA L +S +T+ KAY +L Sbjct: 1 MNIKIDKNSLITITQQLVHYFSDRIMSGFIKAGQKLPSIRSLAKELGISPMTIIKAYNNL 60 Query: 61 EKKGHLICSQGKGCFVAEHERSGPGNGADWRDGYE------DYLPRAQLWRN--FGYSEV 112 E+ G + QGKG +V E + N +D ++ DYL R+Q N YS Sbjct: 61 EQNGLVTTIQGKGTYVNERNSTVKSNNITEKDSFQWQMSVPDYLSRSQFRYNPNLSYSND 120 Query: 113 KYPFHLAAIHEDLLPLGPISTTMAALVTGQPELMASYGNFQGDPELREIMRRHLQPRGIH 172 Y +A+++ LLP I L+ +L++ Y QGD E R IM ++L+ + I Sbjct: 121 YYNLSVASLNHKLLPTKTILKDSLGLIQNDIKLLSEYPPVQGDYEFRNIMSQYLRSKEIA 180 Query: 173 LATSDLMITSGTQQGIDLVARTFVGPGDTVYLEAPSYTGAIDVFAGRGAEMIFVPMDHEG 232 + ++++TSG+QQGI L+A TF+GPGD V +E P+Y GAID+F RGA ++ VP+D EG Sbjct: 181 TSPENILVTSGSQQGISLIASTFIGPGDIVVMETPTYPGAIDLFKCRGAVILTVPVDSEG 240 Query: 233 MRVDVLTRLCDARPPKLIYTNPTFQNPSGVTMSMARRQRLGGVS 276 MR D+L LCD PKLIYT P F NP+G +MS R+ L ++ Sbjct: 241 MRTDILMNLCDKHSPKLIYTIPNFHNPTGYSMSSKRKAELLDIA 284 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.138 0.418 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,772,696,110 Number of extensions: 77702235 Number of successful extensions: 210673 Number of sequences better than 1.0e-05: 4159 Number of HSP's gapped: 207468 Number of HSP's successfully gapped: 4199 Length of query: 285 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 151 Effective length of database: 1,798,280,193 Effective search space: 271540309143 Effective search space used: 271540309143 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 130 (54.7 bits)