BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0112.0026.p (411 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1DDH0.1 B1DDH0_9BACL Putative transcriptional regulator, GntR f... 439 e-121 C0ZHN6.1 C0ZHN6_BREBN Putative aminotransferase EC=2.6.1.- 410 e-112 Q9KDT4.1 Q9KDT4_BACHD Aminotransferase 379 e-103 Q5WHW7.1 Q5WHW7_BACSK Aminotransferase 376 e-102 Q08XE4.1 Q08XE4_STIAU Aminotransferase, class I and II 341 8e-92 >B1DDH0.1 B1DDH0_9BACL Putative transcriptional regulator, GntR family Length = 399 Score = 439 bits (1130), Expect = e-121, Method: Compositional matrix adjust. Identities = 212/398 (53%), Positives = 287/398 (72%), Gaps = 2/398 (0%) Query: 1 MKINFSTAADHLGSSAVREILKVTQGKDIISLAGGLPGEDLFPMQAVRDAYNKALSADTS 60 M+ F++ + SS VR+ILK+TQG DI+S AGGLP E+LFP+QAVR+A ++A+SA TS Sbjct: 1 MEFRFASRMTQVKSSVVRDILKLTQGNDIVSFAGGLPAEELFPVQAVREAADRAISAGTS 60 Query: 61 ALQYGLTEGYLPLREQLAARLTGQGISVSASDMILTTGSQQALDLLCKILLDPGDAVLVE 120 ALQYGLTEGYLPLREQL R+ +G++V +MI+TTGSQQA+ LL ++L +PGD V+VE Sbjct: 61 ALQYGLTEGYLPLREQLCVRMAQKGMNVQPDEMIITTGSQQAISLLVQVLTEPGDTVIVE 120 Query: 121 APTYLAALQVLGSYRADIHTVQSDEHGMLPEHLEEQLRIRRPKLLYAVPTFNNPSGATWS 180 PTYLA LQV + + +SDEHGM+PE +E +R +PK +YAVPTF NP+G WS Sbjct: 121 RPTYLACLQVFELHGLKVVAAESDEHGMIPEDVERLVRQHKPKFIYAVPTFGNPTGNVWS 180 Query: 181 RERREQIVELCRRYDVLILEDNPYGEITFDESPGAYPPTLAAIDRSGEGESCVVYTGTFS 240 ERR++I+ +C + V I+ED+PYGE+ +DE+ AY PTL A+D+ G V+YT TFS Sbjct: 181 MERRQEILRICAGHQVPIIEDDPYGELKYDEN-AAY-PTLFALDQQQFGSGVVIYTSTFS 238 Query: 241 KIVAPGVRTGWIIGPPELIRVIAKAKQAADLHSSTIDQRALAELLQTFDLEGHIRLISRE 300 KIVAP +RTGW IG +I+++AKAKQAADL SST+DQ+ L++LL F L+ HIR+IS Sbjct: 239 KIVAPALRTGWAIGDTRVIKMLAKAKQAADLQSSTMDQQILSQLLAHFPLDEHIRIISES 298 Query: 301 YHSRMKLLSGELAARSWEGTHFLEPRGGMFLWLTLAEPVSAARLLPYAVEQGVAFVPGEV 360 Y RM+ + + A+ EG H++EP+GGMFLW+ L E + A LL AV +GVAFVPG Sbjct: 299 YGDRMREMQNLIKAQKIEGMHWIEPKGGMFLWVELPEGLDAEALLRVAVSKGVAFVPGSA 358 Query: 361 FYSEQPRKNTMRLNFTHTPPALMQTAVQRLDKALKIYS 398 FY+ P++NT RLNFTH V RL +A++ ++ Sbjct: 359 FYAYDPKRNTARLNFTHNKGEKTVLGVARLAEAIREFT 396 >C0ZHN6.1 C0ZHN6_BREBN Putative aminotransferase EC=2.6.1.- Length = 402 Score = 410 bits (1053), Expect = e-112, Method: Compositional matrix adjust. Identities = 206/401 (51%), Positives = 277/401 (69%), Gaps = 5/401 (1%) Query: 1 MKINFSTAADHLGSSAVREILKVTQGKDIISLAGGLPGEDLFPMQAVRDAYNKALSADTS 60 M+ +FS + + L SSAVREILK+TQG ++SLAGGLP ED FP+ +R+A+N+A Sbjct: 1 MEYSFSKSVEALSSSAVREILKLTQGNQVLSLAGGLPAEDSFPIAEMREAFNRAFEKGAK 60 Query: 61 ALQYGLTEGYLPLREQLAARLTGQGISVSASDMILTTGSQQALDLLCKILLDPGDAVLVE 120 ALQYGLT+GYLPLRE +A+R+ + ++V A +MI+TTGSQQA+DLLC++ LD GD VLVE Sbjct: 61 ALQYGLTDGYLPLREWIASRMKQKHMNVGADNMIITTGSQQAVDLLCRVYLDEGDVVLVE 120 Query: 121 APTYLAALQVLGSYRADIHTVQSDEHGMLPEHLEEQLRIRRPKLLYAVPTFNNPSGATWS 180 PTYLAA+Q+ V D +GM + L +++ RPK++Y +PTF NP+G WS Sbjct: 121 NPTYLAAVQLFQFRGIKAIPVDGDANGMDLDDLAKKIAQYRPKMVYVIPTFANPTGKVWS 180 Query: 181 RERREQIVELCRRYDVLILEDNPYGEITFD-ESPGAYPPTLAAIDRSGEGESCVVYTGTF 239 ERR ++ C+ ++LILED+PYGEI FD E+P ++ ++D + CVVYT TF Sbjct: 181 LERRLGLLRQCKAQNILILEDDPYGEIQFDGEAPYR---SIFSLDEH-PTDCCVVYTSTF 236 Query: 240 SKIVAPGVRTGWIIGPPELIRVIAKAKQAADLHSSTIDQRALAELLQTFDLEGHIRLISR 299 SKIVAPG+RTGW IG +I+++ KAKQA DL SSTIDQ AL ELL FDLE HI I Sbjct: 237 SKIVAPGLRTGWAIGDTRVIQMMVKAKQAVDLQSSTIDQYALYELLSRFDLERHIEKIRE 296 Query: 300 EYHSRMKLLSGELAARSWEGTHFLEPRGGMFLWLTLAEPVSAARLLPYAVEQGVAFVPGE 359 Y +RM+ + L A++WEG + +PRGGMFLW+ L E A +LL +V++GVAFVPG+ Sbjct: 297 SYKARMEWMHELLVAQNWEGVQWEKPRGGMFLWVNLPEHFDAEKLLAQSVKEGVAFVPGK 356 Query: 360 VFYSEQPRKNTMRLNFTHTPPALMQTAVQRLDKALKIYSQS 400 FY+ +P NTMRLN+T + A+ RL KA YS+S Sbjct: 357 PFYAAEPHLNTMRLNYTLLNREDTELAISRLGKAFHAYSES 397 >Q9KDT4.1 Q9KDT4_BACHD Aminotransferase Length = 400 Score = 379 bits (973), Expect = e-103, Method: Compositional matrix adjust. Identities = 182/399 (45%), Positives = 271/399 (67%), Gaps = 14/399 (3%) Query: 1 MKINFSTAADHLGSSAVREILKVTQGKDIISLAGGLPGEDLFPMQAVRDAYNKALSADTS 60 MK F+ HL SSAVR+ILKV + +IS AGGLP ++LFP++A+ DA+++ + Sbjct: 1 MKYAFAKRVRHLHSSAVRDILKVVNQQGVISFAGGLPDDELFPLEAMEDAFSRVFATGKK 60 Query: 61 ALQYGLTEGYLPLREQLAARLTGQGI-SVSASDMILTTGSQQALDLLCKILLDPGDAVLV 119 ++QY TEG+LPLRE + R+ +GI S S ++++TTGSQQA+DL +++ +PGD VL Sbjct: 61 SMQYSETEGFLPLRELILERMGRKGIRSYSERNVLITTGSQQAIDLFSRVMFNPGDVVLT 120 Query: 120 EAPTYLAALQVLGSYRADIHTVQSDEHGMLPEHLEEQLRIRRPKLLYAVPTFNNPSGATW 179 E PTYLAALQV SY A+I V SD+ GM+PE LE++++ +PK +Y VPTF+NP+G W Sbjct: 121 EDPTYLAALQVFESYEAEIVPVASDDEGMIPEDLEQKMKQHKPKCVYVVPTFSNPAGRVW 180 Query: 180 SRERREQIVELCRRYDVLILEDNPYGEITFDESPGAYPPTLAAIDRSGEGESCVVYTGTF 239 S ERR+ ++ + ++ VLI ED+PYG+I F++ P LAA+D S V+YT TF Sbjct: 181 SLERRKHLLNMAHKHHVLIFEDDPYGDIQFNQEETYVP--LAAMDTG----SHVLYTSTF 234 Query: 240 SKIVAPGVRTGWIIGPPELIRVIAKAKQAADLHSSTIDQRALAELLQTFDLEGHIRLISR 299 SK P +RTGWI GP +++R++A+AKQA DLHS+++ Q+AL +L D++GHI+ + Sbjct: 235 SKTAVPALRTGWITGPFQVVRMMAQAKQANDLHSNSLSQQALYQLFTHHDMDGHIQRLIE 294 Query: 300 EYHSRMKLLSGELAARSWEGTHFLEPRGGMFLWLTLAEPVSAARLLPYAVEQGVAFVPGE 359 Y SR ++ L G F+EP+GGMFLW L E ++ + L+ AV +G+A+VPGE Sbjct: 295 VYRSRKDVMIKTLQGADIPGLRFVEPKGGMFLWAELDEAINTSLLIKEAVAKGMAYVPGE 354 Query: 360 VFYSEQPRKNTMRLNFTHTPPALMQTAVQRLDKALKIYS 398 FY+ P+ NT+RLNFTH+ P ++++K + I++ Sbjct: 355 PFYAGVPKYNTLRLNFTHSTP-------EKIEKGIGIFA 386 >Q5WHW7.1 Q5WHW7_BACSK Aminotransferase Length = 400 Score = 376 bits (965), Expect = e-102, Method: Compositional matrix adjust. Identities = 190/404 (47%), Positives = 271/404 (67%), Gaps = 12/404 (2%) Query: 1 MKINFSTAADHLGSSAVREILKVTQGKDIISLAGGLPGEDLFPMQAVRDAYNKALSADTS 60 MK F+ HL SSAVR+ILKV D+IS AGGLP + LFP++A+ +A+++ ++ Sbjct: 1 MKYAFAQRVRHLKSSAVRDILKVVNRGDVISFAGGLPDDGLFPLKAIEEAFSRVFASGNK 60 Query: 61 ALQYGLTEGYLPLREQLAARLTGQGIS-VSASDMILTTGSQQALDLLCKILLDPGDAVLV 119 ALQYG TEGYLPLRE + R+ +GI+ ++A +M+LTTGSQQA+DL ++++ PGD + Sbjct: 61 ALQYGETEGYLPLREVILERMEKKGITGLTADEMLLTTGSQQAIDLFSRVMIGPGDVIFT 120 Query: 120 EAPTYLAALQVLGSYRADIHTVQSDEHGMLPEHLEEQLRIRRPKLLYAVPTFNNPSGATW 179 E PTYLAALQV SY A I V+ D GM+ + L +++ +PK++Y VPTF+NP+G W Sbjct: 121 EEPTYLAALQVFQSYEATIIPVKCDADGMMMDDLVRKIKEYKPKVIYVVPTFSNPTGRVW 180 Query: 180 SRERREQIVELCRRYDVLILEDNPYGEITFDESPGAYPPTLAAIDRSGEGESCVVYTGTF 239 + ERR+++V L R++ VLI ED+PYG+I F +PG Y P +AA+D S V+YT TF Sbjct: 181 TLERRKELVGLARKHHVLIFEDDPYGDIQF--TPGGYTP-IAALDDG----SHVLYTSTF 233 Query: 240 SKIVAPGVRTGWIIGPPELIRVIAKAKQAADLHSSTIDQRALAELLQTFDLEGHIRLISR 299 SK P +RTGWI GP ++IR++A+AKQA DLHS++I +AL L + FD +GHI IS Sbjct: 234 SKTAVPALRTGWITGPYQIIRMMAQAKQANDLHSNSIGHQALYHLCRNFDFDGHIHNISE 293 Query: 300 EYHSRMKLLSGELAARSWEGT-HFLEPRGGMFLWLTLAEPVSAARLLPYAVEQGVAFVPG 358 Y R ++ L G+ F+EP GGMFLW+ V+ LLP AVE+G+A+VPG Sbjct: 294 LYGHRKNVMVDCLKEAKERGSIQFIEPEGGMFLWVEAEPHVNTEALLPRAVEKGMAYVPG 353 Query: 359 EVFYSEQPRKNTMRLNFTHTPPALMQTAVQRLDKALKIYSQSEE 402 FY+ P+ NT+RLNFTH A ++ + + L I+ +++E Sbjct: 354 RPFYAGAPQLNTLRLNFTHATDAEIEKGMGIM---LGIFEEAKE 394 >Q08XE4.1 Q08XE4_STIAU Aminotransferase, class I and II Length = 383 Score = 341 bits (874), Expect = 8e-92, Method: Compositional matrix adjust. Identities = 175/381 (45%), Positives = 245/381 (64%), Gaps = 8/381 (2%) Query: 11 HLGSSAVREILKVTQGKDIISLAGGLPGEDLFPMQAVRDAYNKALSAD-TSALQYGLTEG 69 L +SAVREILKV + DI+S AGGLP +LFP+ A+ A+ + +++ +ALQY TEG Sbjct: 3 QLKASAVREILKVAERPDILSFAGGLPAPELFPVAAIAQAHAEVFASEGPAALQYSTTEG 62 Query: 70 YLPLREQLAARLTGQGISVSASDMILTTGSQQALDLLCKILLDPGDAVLVEAPTYLAALQ 129 + PLRE + + L G+ +A +++T GSQQ ++L K+LLDPGD V+VE P+YLAALQ Sbjct: 63 FAPLREWICSHLAKGGLRATAEQVLITCGSQQGIELTAKVLLDPGDVVVVENPSYLAALQ 122 Query: 130 VLGSYRADIHTVQSDEHGMLPEHLEEQLRIRRPKLLYAVPTFNNPSGATWSRERREQIVE 189 Y A SD+ GM + LE L RRPKL+Y VP F+NP G + S ERR +V Sbjct: 123 TFSGYEASFAVAGSDDDGMRVDDLERILIERRPKLIYIVPNFHNPKGTSLSLERRHMLVR 182 Query: 190 LCRRYDVLILEDNPYGEITFDESPGAYPPTLAAIDRSGEGESCVVYTGTFSKIVAPGVRT 249 L +R+ VLILED+PYGE+ F P P+LA++D G V+ GTFSK +APG+R Sbjct: 183 LAQRHRVLILEDDPYGELRFRGKP---LPSLASLDTEG----VVLQLGTFSKTLAPGLRI 235 Query: 250 GWIIGPPELIRVIAKAKQAADLHSSTIDQRALAELLQTFDLEGHIRLISREYHSRMKLLS 309 GW+ GP EL+R + AKQA+DLH++T+ QRA +LL FD GH+ + +Y R ++ Sbjct: 236 GWVTGPRELVRSLTIAKQASDLHTATLAQRATLKLLNQFDYTGHLNQLRAQYGERCLVML 295 Query: 310 GELAARSWEGTHFLEPRGGMFLWLTLAEPVSAARLLPYAVEQGVAFVPGEVFYSEQPRKN 369 L GT + +P GGMF+W+ L +SA L P A+E+ VAFVPG F++ RK Sbjct: 296 DALKENMPPGTRWTQPDGGMFVWVELPPGMSAEELFPKALEKKVAFVPGTSFFAAHARKE 355 Query: 370 TMRLNFTHTPPALMQTAVQRL 390 MRLN+++ PP L++ ++RL Sbjct: 356 FMRLNYSNRPPELIREGIRRL 376 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.134 0.386 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,446,783,989 Number of extensions: 104548798 Number of successful extensions: 351501 Number of sequences better than 1.0e-05: 9377 Number of HSP's gapped: 338205 Number of HSP's successfully gapped: 9382 Length of query: 411 Length of database: 3,060,696,203 Length adjustment: 138 Effective length of query: 273 Effective length of database: 1,760,596,133 Effective search space: 480642744309 Effective search space used: 480642744309 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 132 (55.5 bits)