BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0112.0025.p (370 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1DFM9.1 B1DFM9_9BACL Putative uncharacterized protein 481 e-134 C0ZB99.1 C0ZB99_BREBN Putative uncharacterized protein yqfO 397 e-109 C3BQ26.1 C3BQ26_9BACI Putative uncharacterized protein 397 e-109 C3B845.1 C3B845_BACMY Putative uncharacterized protein 397 e-109 C3AQP9.1 C3AQP9_BACMY Putative uncharacterized protein 397 e-109 >B1DFM9.1 B1DFM9_9BACL Putative uncharacterized protein Length = 373 Score = 481 bits (1238), Expect = e-134, Method: Compositional matrix adjust. Identities = 234/373 (62%), Positives = 285/373 (76%), Gaps = 3/373 (0%) Query: 1 MFAKGQTVIGYMEQLAPKHLAEEWDNVGLQLGSLQKEITGXXXXXXXXXXXXXEAIAQGC 60 MFA GQTVI MEQLAPKH A E D +GLQLG+L KEI EAIA G Sbjct: 1 MFANGQTVIQIMEQLAPKHYAVENDKIGLQLGTLNKEIRNIVVALDVTDEVVDEAIAAGA 60 Query: 61 NLIIAHHAIIFRPIKGIQTDTPMGKLYEKLIKHDIAVYISHTNLDVAEGGMNDWMAEALG 120 LIIAHHAII+RP+ + T TP G+LYEKLIK+DIAVYISHTNLDVA+GG+NDWMA+ +G Sbjct: 61 GLIIAHHAIIYRPLAKLDTSTPAGRLYEKLIKNDIAVYISHTNLDVADGGINDWMADLVG 120 Query: 121 XXX---XXXXXXXTEQLSKLVVFVPKDHHQKVLDAILNAGAGWIGNYSHCSFNIEGYGTF 177 T++L KLVVFVP++ H+KVL A+ AGAG IG+YSHCSFNIEG GTF Sbjct: 121 IKAEGRQSLEEVHTDKLYKLVVFVPEEQHEKVLQAMFQAGAGHIGDYSHCSFNIEGTGTF 180 Query: 178 IPREGSDPYLGEKGKLERAEEIRIETIVPQPIRNKVVQAMLKAHPYEEVAYDLYSMDLKG 237 +P EG++P++G++G+LE+A+EIRIETIVP + KVVQAMLKAHPYEEVAYDLYS+DLKG Sbjct: 181 LPGEGTNPFIGKQGQLEKAKEIRIETIVPHSVHRKVVQAMLKAHPYEEVAYDLYSVDLKG 240 Query: 238 RSFGLGRVGKLKEPTTLGQFIEKVKSGLQVDHVRVVGDLNRPIRKAAVLGGSGAKYYSSA 297 RSFGLGR GKL++P TLG+ +EKVK +V +VR+VGD NR I+KAAVLGGSG +Y A Sbjct: 241 RSFGLGRSGKLEQPVTLGELVEKVKEVFEVPYVRLVGDPNRVIKKAAVLGGSGGRYTRHA 300 Query: 298 IFKGADVLVTGDIDYHTAQDAFLAGITLIDPGHNAEKIMKVKVAEWITAKLNEHKYQTAV 357 F GADVL+TGD+DYHTA DA G+++IDPGHN EKIMK +VA+W+ +L E KY+T Sbjct: 301 QFAGADVLITGDVDYHTAHDALADGLSIIDPGHNVEKIMKQRVADWLNQQLAERKYETKA 360 Query: 358 HASKVNTEPFAFL 370 S +NTEPF F+ Sbjct: 361 VYSTINTEPFRFM 373 >C0ZB99.1 C0ZB99_BREBN Putative uncharacterized protein yqfO Length = 371 Score = 397 bits (1021), Expect = e-109, Method: Compositional matrix adjust. Identities = 194/371 (52%), Positives = 260/371 (70%), Gaps = 1/371 (0%) Query: 1 MFAKGQTVIGYMEQLAPKHLAEEWDNVGLQLGSLQKEITGXXXXXXXXXXXXXEAIAQGC 60 M A GQTVI Y+E+LAPK LA E D +GL +G+LQK++ EAIA+G Sbjct: 1 MLAHGQTVIQYVERLAPKSLAMEGDKIGLHVGTLQKKVKKVMIALDVLESVVEEAIAEGV 60 Query: 61 NLIIAHHAIIFRPIKGIQTDTPMGKLYEKLIKHDIAVYISHTNLDVAEGGMNDWMAEALG 120 +LI+AHHA+I+RP+K ++TD G+++EKLIKHDIAVY +HTNLDVA GGMNDW+AEA+G Sbjct: 61 DLIVAHHAVIYRPLKHLRTDLAAGRVFEKLIKHDIAVYTAHTNLDVAYGGMNDWLAEAVG 120 Query: 121 XXXXXXXXXXT-EQLSKLVVFVPKDHHQKVLDAILNAGAGWIGNYSHCSFNIEGYGTFIP 179 + E KLVVFVP H + V A+ AGAG +GNYSHCSF EG GTF+P Sbjct: 121 LTNVDVLDVLSREAWKKLVVFVPATHKEVVFSALAEAGAGHVGNYSHCSFQTEGTGTFLP 180 Query: 180 REGSDPYLGEKGKLERAEEIRIETIVPQPIRNKVVQAMLKAHPYEEVAYDLYSMDLKGRS 239 EG++P++G G+LE+ EE+RIE IVP ++ VV+AML AHPYEEVAYD+ ++ G + Sbjct: 181 GEGTNPHIGSTGQLEKVEEVRIEMIVPASRQSAVVKAMLAAHPYEEVAYDIIPLEQSGTA 240 Query: 240 FGLGRVGKLKEPTTLGQFIEKVKSGLQVDHVRVVGDLNRPIRKAAVLGGSGAKYYSSAIF 299 +G+GR+G L EP TL +F VK + +RVVGDL+ ++K AV+GG G+ + S AIF Sbjct: 241 YGIGRIGTLPEPLTLREFALLVKERFSLHGLRVVGDLDATVKKVAVVGGDGSSFVSKAIF 300 Query: 300 KGADVLVTGDIDYHTAQDAFLAGITLIDPGHNAEKIMKVKVAEWITAKLNEHKYQTAVHA 359 KGADV +TGDI YHTA DA G++++D GHN EKIMK K+A + +L + Y+T V Sbjct: 301 KGADVYLTGDIGYHTAHDAQAEGLSIVDAGHNIEKIMKEKLATILLEQLQANGYETEVIP 360 Query: 360 SKVNTEPFAFL 370 S+V+T+PF F+ Sbjct: 361 SRVHTDPFQFV 371 >C3BQ26.1 C3BQ26_9BACI Putative uncharacterized protein Length = 364 Score = 397 bits (1020), Expect = e-109, Method: Compositional matrix adjust. Identities = 191/364 (52%), Positives = 255/364 (70%), Gaps = 1/364 (0%) Query: 8 VIGYMEQLAPKHLAEEWDNVGLQLGSLQKEITGXXXXXXXXXXXXXEAIAQGCNLIIAHH 67 +I E + PKHLA E D +GLQ+G+L K + EAI G N+IIAHH Sbjct: 1 MISLFESMYPKHLAMEGDKIGLQIGALNKPVQHVLIALDVTEAVVEEAIQIGANVIIAHH 60 Query: 68 AIIFRPIKGIQTDTPMGKLYEKLIKHDIAVYISHTNLDVAEGGMNDWMAEALGXXXXXXX 127 +IF P+K I TD G++ E IK+DIAVY +HTN+DVA+GG+ND +AEALG Sbjct: 61 PLIFNPLKAIHTDKAYGRIIETCIKNDIAVYAAHTNVDVAKGGVNDLLAEALGLQNTEVL 120 Query: 128 X-XXTEQLSKLVVFVPKDHHQKVLDAILNAGAGWIGNYSHCSFNIEGYGTFIPREGSDPY 186 +E++ K+VV VP H ++V A+ +AGAG+IGNYSHC+FN EG GTF+P EG++PY Sbjct: 121 VPTYSEEMKKIVVCVPATHAEEVRKALGDAGAGYIGNYSHCTFNSEGIGTFMPGEGTNPY 180 Query: 187 LGEKGKLERAEEIRIETIVPQPIRNKVVQAMLKAHPYEEVAYDLYSMDLKGRSFGLGRVG 246 +GE G+LER EE++IETI+P P+ KVV+AML AHPYEEVAYD+Y +D KG + GLG++G Sbjct: 181 IGETGQLERVEEVKIETIIPAPLERKVVKAMLTAHPYEEVAYDVYPLDNKGETLGLGKIG 240 Query: 247 KLKEPTTLGQFIEKVKSGLQVDHVRVVGDLNRPIRKAAVLGGSGAKYYSSAIFKGADVLV 306 L+E TLGQF E VKS L V RVVG+L+ +RK AVLGG G KY + A FKGADV V Sbjct: 241 YLQEEMTLGQFAEHVKSALDVKGARVVGNLDDKVRKVAVLGGDGNKYITQAKFKGADVYV 300 Query: 307 TGDIDYHTAQDAFLAGITLIDPGHNAEKIMKVKVAEWITAKLNEHKYQTAVHASKVNTEP 366 TGD+ YH A DA + G+ ++DPGHN EK+MK V + + K++E K+ +HAS+++T+P Sbjct: 301 TGDMYYHVAHDAMMLGLNIVDPGHNVEKVMKQGVQKQLQQKVDEKKFAVQIHASQLHTDP 360 Query: 367 FAFL 370 F F+ Sbjct: 361 FTFV 364 >C3B845.1 C3B845_BACMY Putative uncharacterized protein Length = 364 Score = 397 bits (1020), Expect = e-109, Method: Compositional matrix adjust. Identities = 191/364 (52%), Positives = 255/364 (70%), Gaps = 1/364 (0%) Query: 8 VIGYMEQLAPKHLAEEWDNVGLQLGSLQKEITGXXXXXXXXXXXXXEAIAQGCNLIIAHH 67 +I E + PKHLA E D +GLQ+G+L K + EAI G N+IIAHH Sbjct: 1 MISLFESMYPKHLAMEGDKIGLQIGALNKPVQHVLIALDVTEAVVEEAIQIGANVIIAHH 60 Query: 68 AIIFRPIKGIQTDTPMGKLYEKLIKHDIAVYISHTNLDVAEGGMNDWMAEALGXXXXXXX 127 +IF P+K I TD G++ E IK+DIAVY +HTN+DVA+GG+ND +AEALG Sbjct: 61 PLIFNPLKAIHTDKAYGRIIETCIKNDIAVYAAHTNVDVAKGGVNDLLAEALGLQNTEVL 120 Query: 128 X-XXTEQLSKLVVFVPKDHHQKVLDAILNAGAGWIGNYSHCSFNIEGYGTFIPREGSDPY 186 +E++ K+VV VP H ++V A+ +AGAG+IGNYSHC+FN EG GTF+P EG++PY Sbjct: 121 VPTYSEEMKKIVVCVPATHAEEVRKALGDAGAGYIGNYSHCTFNSEGIGTFMPGEGTNPY 180 Query: 187 LGEKGKLERAEEIRIETIVPQPIRNKVVQAMLKAHPYEEVAYDLYSMDLKGRSFGLGRVG 246 +GE G+LER EE++IETI+P P+ KVV+AML AHPYEEVAYD+Y +D KG + GLG++G Sbjct: 181 IGETGQLERVEEVKIETIIPAPLERKVVKAMLTAHPYEEVAYDVYPLDNKGETLGLGKIG 240 Query: 247 KLKEPTTLGQFIEKVKSGLQVDHVRVVGDLNRPIRKAAVLGGSGAKYYSSAIFKGADVLV 306 L+E TLGQF E VKS L V RVVG+L+ +RK AVLGG G KY + A FKGADV V Sbjct: 241 YLQEEMTLGQFAEHVKSALDVKGARVVGNLDDKVRKVAVLGGDGNKYITQAKFKGADVYV 300 Query: 307 TGDIDYHTAQDAFLAGITLIDPGHNAEKIMKVKVAEWITAKLNEHKYQTAVHASKVNTEP 366 TGD+ YH A DA + G+ ++DPGHN EK+MK V + + K++E K+ +HAS+++T+P Sbjct: 301 TGDMYYHVAHDAMMLGLNIVDPGHNVEKVMKQGVQKQLQQKVDEKKFAVQIHASQLHTDP 360 Query: 367 FAFL 370 F F+ Sbjct: 361 FTFV 364 >C3AQP9.1 C3AQP9_BACMY Putative uncharacterized protein Length = 364 Score = 397 bits (1020), Expect = e-109, Method: Compositional matrix adjust. Identities = 191/364 (52%), Positives = 255/364 (70%), Gaps = 1/364 (0%) Query: 8 VIGYMEQLAPKHLAEEWDNVGLQLGSLQKEITGXXXXXXXXXXXXXEAIAQGCNLIIAHH 67 +I E + PKHLA E D +GLQ+G+L K + EAI G N+IIAHH Sbjct: 1 MISLFESMYPKHLAMEGDKIGLQIGALNKPVQHVLIALDVTEAVVEEAIQIGANVIIAHH 60 Query: 68 AIIFRPIKGIQTDTPMGKLYEKLIKHDIAVYISHTNLDVAEGGMNDWMAEALGXXXXXXX 127 +IF P+K I TD G++ E IK+DIAVY +HTN+DVA+GG+ND +AEALG Sbjct: 61 PLIFNPLKAIHTDKAYGRIIETCIKNDIAVYAAHTNVDVAKGGVNDLLAEALGLQNTEVL 120 Query: 128 X-XXTEQLSKLVVFVPKDHHQKVLDAILNAGAGWIGNYSHCSFNIEGYGTFIPREGSDPY 186 +E++ K+VV VP H ++V A+ +AGAG+IGNYSHC+FN EG GTF+P EG++PY Sbjct: 121 VPTYSEEMKKIVVCVPATHAEEVRKALGDAGAGYIGNYSHCTFNSEGIGTFMPGEGTNPY 180 Query: 187 LGEKGKLERAEEIRIETIVPQPIRNKVVQAMLKAHPYEEVAYDLYSMDLKGRSFGLGRVG 246 +GE G+LER EE++IETI+P P+ KVV+AML AHPYEEVAYD+Y +D KG + GLG++G Sbjct: 181 IGETGQLERVEEVKIETIIPAPLERKVVKAMLTAHPYEEVAYDVYPLDNKGETLGLGKIG 240 Query: 247 KLKEPTTLGQFIEKVKSGLQVDHVRVVGDLNRPIRKAAVLGGSGAKYYSSAIFKGADVLV 306 L+E TLGQF E VKS L V RVVG+L+ +RK AVLGG G KY + A FKGADV V Sbjct: 241 YLQEEMTLGQFAEHVKSALDVKGARVVGNLDDKVRKVAVLGGDGNKYITQAKFKGADVYV 300 Query: 307 TGDIDYHTAQDAFLAGITLIDPGHNAEKIMKVKVAEWITAKLNEHKYQTAVHASKVNTEP 366 TGD+ YH A DA + G+ ++DPGHN EK+MK V + + K++E K+ +HAS+++T+P Sbjct: 301 TGDMYYHVAHDAMMLGLNIVDPGHNVEKVMKQGVQKQLQQKVDEKKFAVQIHASQLHTDP 360 Query: 367 FAFL 370 F F+ Sbjct: 361 FTFV 364 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.137 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,096,187,192 Number of extensions: 84509770 Number of successful extensions: 170481 Number of sequences better than 1.0e-05: 834 Number of HSP's gapped: 169495 Number of HSP's successfully gapped: 1079 Length of query: 370 Length of database: 3,060,696,203 Length adjustment: 137 Effective length of query: 233 Effective length of database: 1,770,017,148 Effective search space: 412413995484 Effective search space used: 412413995484 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 132 (55.5 bits)