BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0112.0024.p (265 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KG46.1 B3KG46_9BACI Putative uncharacterized protein 289 1e-76 B1DFN0.1 B1DFN0_9BACL Putative uncharacterized protein 258 3e-67 C1PEH4.1 C1PEH4_BACCO Putative uncharacterized protein 207 6e-52 B4BLS3.1 B4BLS3_9BACI Putative uncharacterized protein 207 8e-52 A4IR07.1 A4IR07_GEOTN Putative uncharacterized protein 207 9e-52 >B3KG46.1 B3KG46_9BACI Putative uncharacterized protein Length = 255 Score = 289 bits (740), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 152/257 (59%), Positives = 187/257 (72%), Gaps = 3/257 (1%) Query: 8 MNNNKLSNRLQLVLEQIPQGSIVADIGSDHALLPVAAVASGRAPSAVAGEVNPGPFEAAR 67 M+ KLS RL +LE+IP+GS +ADIGSDHALLPVAAV G A AVAGEVNPGP++AA Sbjct: 1 MSALKLSIRLTKILEKIPRGSKLADIGSDHALLPVAAVECGAAVQAVAGEVNPGPYDAAV 60 Query: 68 RGVAEAGLGKVIAVRRGDGLEVLEPGEADCITIAGMGGALIASILDRGLSLGKLEGVKTL 127 + V E+G+ VI+VR+GDGL VL GEAD ITIAGMGG+LIA+ILDRG+ KL GV+ L Sbjct: 61 KQVIESGMTDVISVRKGDGLNVLSAGEADVITIAGMGGSLIAAILDRGIE--KLAGVRRL 118 Query: 128 ALQPNVGEDILRRWLLNHGWVLTAEHILEEDGKIYEILTAVREEAAEGITNEQLYRDLQL 187 LQPNVGEDILRRWL +HGWVL E ILEEDGKIYE+L A + + +TNEQ+Y++ + Sbjct: 119 VLQPNVGEDILRRWLHSHGWVLIEEWILEEDGKIYEVLVAEPSDGTD-LTNEQVYKERTI 177 Query: 188 AGGMVCDRELLLEMGPWLLQAPNAAFFAKWQGEIAKLQGILTSLSRSEQAPAEERRNQIS 247 G+ L MGPWL Q+PN F KW E+ K+ IL SLSRS+ A ++ ++I Sbjct: 178 GDGVRLSANWLFRMGPWLTQSPNPVFHDKWTSEMEKMGHILQSLSRSDLPTAADKASEIR 237 Query: 248 AQINRIVEVLACLPKDK 264 + I I EVLACLPKDK Sbjct: 238 SDIEFIQEVLACLPKDK 254 >B1DFN0.1 B1DFN0_9BACL Putative uncharacterized protein Length = 262 Score = 258 bits (660), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 136/252 (53%), Positives = 175/252 (69%), Gaps = 3/252 (1%) Query: 12 KLSNRLQLVLEQIPQGSIVADIGSDHALLPVAAVASGRAPSAVAGEVNPGPFEAARRGVA 71 KLS RLQ + + + GS VADIGSDHALLPV + SG+ PSA+AGE+NPGPFEAAR+ A Sbjct: 3 KLSRRLQRIADFVTPGSRVADIGSDHALLPVFLIQSGKVPSAIAGELNPGPFEAARKQAA 62 Query: 72 EAGLGKVIAVRRGDGLEVLEPGEADCITIAGMGGALIASILDRGLSLGKLEGVKTLALQP 131 +AGL + VRRGDGL VL+PGEAD +TIAGMGG+L++SIL+ G S GKLEGVK L LQP Sbjct: 63 DAGLTGKLQVRRGDGLSVLQPGEADTVTIAGMGGSLMSSILEEGYSAGKLEGVKELVLQP 122 Query: 132 NVGEDILRRWLLNHGWVLTAEHILEEDGKIYEILTAVREEAAE-GITNEQLYRDLQLAGG 190 NVGE+ +R WLL GW L E ILEED KIYE+L A + + AE N ++Y L Sbjct: 123 NVGEEFVRSWLLKRGWFLAEESILEEDDKIYEVLHAFKFDEAEWKKRNTEVYDPSFLTLP 182 Query: 191 MVCDR--ELLLEMGPWLLQAPNAAFFAKWQGEIAKLQGILTSLSRSEQAPAEERRNQISA 248 ++ +L +MGP LL+AP FF KW+ E+ KL I+ +S+S+ AE+++ Q Sbjct: 183 TYKEKGAVILEKMGPHLLRAPQEVFFKKWRLELDKLGKIIAQMSQSDLEQAEQKKQQFRE 242 Query: 249 QINRIVEVLACL 260 ++N I EVL CL Sbjct: 243 EMNVIEEVLQCL 254 >C1PEH4.1 C1PEH4_BACCO Putative uncharacterized protein Length = 220 Score = 207 bits (528), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 113/232 (48%), Positives = 148/232 (63%), Gaps = 20/232 (8%) Query: 24 IPQGSIVADIGSDHALLPVAAVASGRAPSAVAGEVNPGPFEAARRGVAEAGLGKVIAVRR 83 IP G+++ADIGSDHA LPV V G +AVAGEV GP+ +A++ V +AGL + I+VR+ Sbjct: 5 IPAGTVLADIGSDHAYLPVFCVKDGSVTAAVAGEVAEGPYHSAQKQVEKAGLTEKISVRK 64 Query: 84 GDGLEVLEPGEADCITIAGMGGALIASILDRGLSLGKLEGVKTLALQPNVGEDILRRWLL 143 GDGLE+L PGEA CITIAGMGGALIASILDRG + KL G +TL LQPN G I+RRWL Sbjct: 65 GDGLEILAPGEAGCITIAGMGGALIASILDRGKA--KLNGKETLILQPNTGSHIVRRWLA 122 Query: 144 NHGWVLTAEHILEEDGKIYEILTAVREEAAEGITNEQLYRDLQLAGGMVCDRELLLEMGP 203 +GW +T E ILEEDGKIYEI+ A + AG + E MGP Sbjct: 123 ENGWAVTGEDILEEDGKIYEIIAA------------------EYAGCRIALTEAERLMGP 164 Query: 204 WLLQAPNAAFFAKWQGEIAKLQGILTSLSRSEQAPAEERRNQISAQINRIVE 255 L++ N AF KW+ EI K Q +L+ L +++ +P E + ++ + + E Sbjct: 165 VLIKNQNEAFRKKWRTEIKKWQSVLSHLEQADASPEIEEKKRVYRHLIALAE 216 >B4BLS3.1 B4BLS3_9BACI Putative uncharacterized protein Length = 253 Score = 207 bits (527), Expect = 8e-52, Method: Compositional matrix adjust. Identities = 119/253 (47%), Positives = 160/253 (63%), Gaps = 19/253 (7%) Query: 7 LMNNNKLSNRLQLVLEQIPQGSIVADIGSDHALLPVAAVASGRAPSAVAGEVNPGPFEAA 66 +MN LS RL V IP+G+++ADIGSDHA LP A G A A+AGEV GP +A Sbjct: 19 IMNEFHLSKRLATVASFIPKGAVLADIGSDHAYLPCYACLHGYATKAIAGEVADGPLRSA 78 Query: 67 RRGVAEAGLGKVIAVRRGDGLEVLEPGEADCITIAGMGGALIASILDRGLSLGKLEGVKT 126 ++ V ++GL +I+VR+GDGL V+ PGEADCITIAGMGGALI IL G KL GVK Sbjct: 79 QQQVEKSGLSHLISVRKGDGLAVIAPGEADCITIAGMGGALITRILGDGEE--KLAGVKR 136 Query: 127 LALQPNVGEDILRRWLLNHGWVLTAEHILEEDGKIYEILTAVREEAAEGITNEQLYRDLQ 186 L LQPN+G +++RRWLL+HGW L AE IL+EDG+IYE+L AE + YR+L+ Sbjct: 137 LILQPNIGAELVRRWLLDHGWELVAERILKEDGQIYEVLV------AECGDARRPYRNLE 190 Query: 187 LAGGMVCDRELLLEMGPWLLQAPNAAFFAKWQGEIAKLQGILTSLS-RSEQAPAEERRNQ 245 EL+L GP+LLQ + F KWQ E+ + I+ L+ + E A E++ + Sbjct: 191 A--------ELIL--GPFLLQENSEVFREKWQRELQHWKRIIADLAEKGESESAREKKRE 240 Query: 246 ISAQINRIVEVLA 258 + ++ + E LA Sbjct: 241 LETKVQLVEEALA 253 >A4IR07.1 A4IR07_GEOTN Putative uncharacterized protein Length = 253 Score = 207 bits (526), Expect = 9e-52, Method: Compositional matrix adjust. Identities = 119/253 (47%), Positives = 160/253 (63%), Gaps = 19/253 (7%) Query: 7 LMNNNKLSNRLQLVLEQIPQGSIVADIGSDHALLPVAAVASGRAPSAVAGEVNPGPFEAA 66 +MN LS RL V IP+G+++ADIGSDHA LP A G A A+AGEV GP +A Sbjct: 19 IMNEFHLSKRLATVASFIPKGAVLADIGSDHAYLPCYACLHGYATKAIAGEVADGPLRSA 78 Query: 67 RRGVAEAGLGKVIAVRRGDGLEVLEPGEADCITIAGMGGALIASILDRGLSLGKLEGVKT 126 ++ V ++GL +I+VR+GDGL V+ PGEADCITIAGMGGALI IL G KL GVK Sbjct: 79 QQQVEKSGLSHLISVRKGDGLAVIAPGEADCITIAGMGGALITRILGDGEE--KLAGVKR 136 Query: 127 LALQPNVGEDILRRWLLNHGWVLTAEHILEEDGKIYEILTAVREEAAEGITNEQLYRDLQ 186 L LQPN+G +++RRWLL+HGW L AE IL+EDG+IYE+L AE + YR+L+ Sbjct: 137 LILQPNIGAELVRRWLLDHGWELVAERILKEDGQIYEVLV------AECGDARRPYRNLE 190 Query: 187 LAGGMVCDRELLLEMGPWLLQAPNAAFFAKWQGEIAKLQGILTSLS-RSEQAPAEERRNQ 245 EL+L GP+LLQ + F KWQ E+ + I+ L+ + E A E++ + Sbjct: 191 A--------ELIL--GPFLLQENSEVFREKWQRELQHWKRIIADLAEKGESESAREKKRE 240 Query: 246 ISAQINRIVEVLA 258 + ++ + E LA Sbjct: 241 LEKKVQLVEEALA 253 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.317 0.136 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,580,313,671 Number of extensions: 67230346 Number of successful extensions: 208474 Number of sequences better than 1.0e-05: 407 Number of HSP's gapped: 207640 Number of HSP's successfully gapped: 407 Length of query: 265 Length of database: 3,060,696,203 Length adjustment: 133 Effective length of query: 132 Effective length of database: 1,807,701,208 Effective search space: 238616559456 Effective search space used: 238616559456 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 130 (54.7 bits)