BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0112.0023.p
         (274 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B1DFN1.1 B1DFN1_9BACL Putative uncharacterized protein                111   8e-23
C5D4R7.1 C5D4R7_9BACI Putative uncharacterized protein                 63   2e-08

>B1DFN1.1 B1DFN1_9BACL Putative uncharacterized protein
          Length = 279

 Score =  111 bits (277), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 77/279 (27%), Positives = 120/279 (43%), Gaps = 6/279 (2%)

Query: 1   LNLEKREIILREIQYWRRSKVLPEQYCDFLTNLY---DDEAGVKDSNPIS--LRNLQQGS 55
           +N E+R+II+REI++W RSK+LP+QYCDFL NLY   D EA  + ++ I+  +  +QQ S
Sbjct: 1   MNEERRQIIVREIEHWSRSKLLPDQYCDFLLNLYMDHDQEAKRESNHSIAKAVMAVQQAS 60

Query: 56  IKVWXXXXXXXXXXXXXXXXXXVFPWPLQLATALCVLIVCYGYSYIYRDRNNMISLVLAG 115
            K W                  VF   LQ+  +   +I    +    R R+    L + G
Sbjct: 61  GKHWLLTFGFFTFISFVVLYFNVFHPLLQIGVSAVGVIGLLWFGARLRRRHESAGLAVTG 120

Query: 116 IGSVLTLGFGLWLIALHDLDPDFWRPLLIAGCGLLWVVLGFFLRISLLHFCGFAFWALLY 175
            G +L LG GL+++  H++    W+  ++  C L WVV G   RI LLH CG+    ++Y
Sbjct: 121 AGMLLMLGAGLYILDQHEMTEWGWQAGMLGFCALFWVVYGIAARIQLLHLCGWLAGIMVY 180

Query: 176 AGFFGQQRPDASIXXXXXXXXXXXXXXXXXSWLLHHRVNXXXXXXXXXXXXXWIMPEVDA 235
           A    +                        SW +H                 W MPE+  
Sbjct: 181 AWLLAKFTKAPEWYESQLYWMPLSVLFGWGSWFVHRWSKQAAVVLFAACAILWFMPELYE 240

Query: 236 LLL-RQDFPQWVSXXXXXXXXXXXXXXFIFRKKWITWVT 273
           +++ ++     +               F  RK+W+ WV 
Sbjct: 241 MIVWKEPVMLQLQLQLLLKIAAGGGLLFFMRKQWMVWVA 279


>C5D4R7.1 C5D4R7_9BACI Putative uncharacterized protein
          Length = 179

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 29/57 (50%), Positives = 42/57 (73%), Gaps = 1/57 (1%)

Query: 1  LNLEKREIILREIQYWRRSKVLPEQYCDFLTNLYDDEAGVKDSNPISLRNLQQGSIK 57
          +N ++REII+REI+YW+RS++LPEQYCD+L  LY +    K  + I LR  Q+G I+
Sbjct: 1  MNKQRREIIVREIEYWKRSRLLPEQYCDYLLALYTEGEYKKCPSDI-LRTRQRGMIR 56


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.331    0.146    0.507 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 1,368,761,621
Number of extensions: 46973506
Number of successful extensions: 147933
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 147931
Number of HSP's successfully gapped: 3
Length of query: 274
Length of database: 3,060,696,203
Length adjustment: 134
Effective length of query: 140
Effective length of database: 1,798,280,193
Effective search space: 251759227020
Effective search space used: 251759227020
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 130 (54.7 bits)