BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0112.0020.p (159 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KG43.1 B3KG43_9BACI Putative uncharacterized protein 201 2e-50 B1DFN4.1 B1DFN4_9BACL Putative uncharacterized protein 186 5e-46 Q92BQ4.1 Y1493_LISIN UPF0178 protein Lin1493 132 1e-29 A0AIQ7.1 Y1471_LISW6 UPF0178 protein lwe1471 130 3e-29 B4ANC7.1 B4ANC7_BACPU Protein YqxD (P23) 130 4e-29 >B3KG43.1 B3KG43_9BACI Putative uncharacterized protein Length = 158 Score = 201 bits (510), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 95/148 (64%), Positives = 117/148 (79%) Query: 11 IVVDGDACPVKAEIIAVARSFGIPVIMVSSYDHVLRGEEGVSIVQVDRGADSADLYIANH 70 IVVDGDACPVK EI AR+F +PV++VSSYDH+L+ EEGV+ +QVDR SADLYIANH Sbjct: 10 IVVDGDACPVKKEIAETARAFRVPVLLVSSYDHLLQAEEGVTTIQVDRSDQSADLYIANH 69 Query: 71 ITAGDIVVTQDYGLAALALGKRCRVLSNRGQEYDDLGMDFMLESRHARAVERRRGHYSKG 130 I+ GDIVVTQDYGLAALAL K C V+S RG+ + + +DFML+SRH +A R++G Y KG Sbjct: 70 ISRGDIVVTQDYGLAALALAKSCHVISFRGRIFHNTDIDFMLDSRHHQAKARKQGRYGKG 129 Query: 131 PKAITAEEKIYFQHKLTKLLMILQENVQ 158 PK + E++ +FQHKLTKLL LQENV Sbjct: 130 PKKLLDEDRRFFQHKLTKLLRELQENVH 157 >B1DFN4.1 B1DFN4_9BACL Putative uncharacterized protein Length = 156 Score = 186 bits (473), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 91/153 (59%), Positives = 114/153 (74%), Gaps = 1/153 (0%) Query: 3 MERSQERKIVVDGDACPVKAEIIAVARSFGIPVIMVSSYDHVLRGEEGVSIVQVDRGADS 62 ME +Q +VVDGDACPVK EI ARSFG+PV+MVSSYDH L +EGVS+VQVDR + S Sbjct: 1 MELNQP-TVVVDGDACPVKTEIARTARSFGVPVVMVSSYDHRLEPQEGVSVVQVDRSSQS 59 Query: 63 ADLYIANHITAGDIVVTQDYGLAALALGKRCRVLSNRGQEYDDLGMDFMLESRHARAVER 122 DLYI NHI GDIV+TQD+GLA +A+GK VLS RG++Y D +D+++E RH A +R Sbjct: 60 VDLYIVNHIAKGDIVITQDFGLACIAIGKGAVVLSPRGEQYSDENIDYLMERRHESAKKR 119 Query: 123 RRGHYSKGPKAITAEEKIYFQHKLTKLLMILQE 155 R G +KGPKA+ E++ FQ KLTK+L LQE Sbjct: 120 RAGGKTKGPKAMNHEDRERFQQKLTKVLSNLQE 152 >Q92BQ4.1 Y1493_LISIN UPF0178 protein Lin1493 Length = 146 Score = 132 bits (331), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 64/141 (45%), Positives = 92/141 (65%) Query: 10 KIVVDGDACPVKAEIIAVARSFGIPVIMVSSYDHVLRGEEGVSIVQVDRGADSADLYIAN 69 KI+VD DACPVKAEI VA F + VI V+S++H G + + VD G +SAD+ + N Sbjct: 3 KILVDADACPVKAEIKQVAEQFQLDVIFVASFNHYSVNTNGENWIFVDTGKESADMRMMN 62 Query: 70 HITAGDIVVTQDYGLAALALGKRCRVLSNRGQEYDDLGMDFMLESRHARAVERRRGHYSK 129 GDI+VTQD GLA++ L K V SNRG+ Y + M ML+ R+ A ER++G YSK Sbjct: 63 LANKGDIIVTQDIGLASILLAKGTYVFSNRGELYREEEMSLMLDIRYRHAKERQQGKYSK 122 Query: 130 GPKAITAEEKIYFQHKLTKLL 150 GPKA++ ++++ F+ ++T Sbjct: 123 GPKAMSDQDRVLFKDRMTTFF 143 >A0AIQ7.1 Y1471_LISW6 UPF0178 protein lwe1471 Length = 149 Score = 130 bits (328), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 65/141 (46%), Positives = 92/141 (65%) Query: 10 KIVVDGDACPVKAEIIAVARSFGIPVIMVSSYDHVLRGEEGVSIVQVDRGADSADLYIAN 69 KI+VD DACPVKAEI VA F + VI V+S++H G + + VD G +SAD+ + N Sbjct: 6 KILVDADACPVKAEIKQVAEQFQLEVIFVASFNHYSVNTNGENWIFVDTGKESADMRMMN 65 Query: 70 HITAGDIVVTQDYGLAALALGKRCRVLSNRGQEYDDLGMDFMLESRHARAVERRRGHYSK 129 GDI+VTQD GLA++ L K V SNRG+ Y + M ML+ R+ A ER++G YSK Sbjct: 66 IANKGDIIVTQDIGLASILLAKGTYVFSNRGELYREEEMSLMLDIRYRHAKERQQGKYSK 125 Query: 130 GPKAITAEEKIYFQHKLTKLL 150 GPKA++ +++ F+ ++T L Sbjct: 126 GPKAMSDQDRSLFKDRITTFL 146 >B4ANC7.1 B4ANC7_BACPU Protein YqxD (P23) Length = 166 Score = 130 bits (327), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 70/148 (47%), Positives = 94/148 (63%), Gaps = 1/148 (0%) Query: 4 ERSQERKIVVDGDACPVKAEIIAVARSFGIPVIMVSSYDHVLRGEEGVSIVQ-VDRGADS 62 E QER I VD DACPVK EI++VA F +PV ++SY+H + + VD ++ Sbjct: 11 EHKQERTIYVDADACPVKDEILSVASQFQVPVTFIASYEHFQTKRSPLEDWRFVDTHKEA 70 Query: 63 ADLYIANHITAGDIVVTQDYGLAALALGKRCRVLSNRGQEYDDLGMDFMLESRHARAVER 122 ADL IAN +A DIVVTQD GLA+L L ++ VLS RG+ Y + +DF LE RH + +R Sbjct: 71 ADLVIANSASAHDIVVTQDIGLASLLLPRQVIVLSERGRMYTNETIDFDLERRHVSSKQR 130 Query: 123 RRGHYSKGPKAITAEEKIYFQHKLTKLL 150 R+G Y KGPK + E+K F +L K+L Sbjct: 131 RKGVYGKGPKKLLEEDKKRFITQLQKIL 158 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.321 0.136 0.381 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 837,471,850 Number of extensions: 30451626 Number of successful extensions: 78223 Number of sequences better than 1.0e-05: 661 Number of HSP's gapped: 77806 Number of HSP's successfully gapped: 661 Length of query: 159 Length of database: 3,060,696,203 Length adjustment: 120 Effective length of query: 39 Effective length of database: 1,930,174,403 Effective search space: 75276801717 Effective search space used: 75276801717 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 125 (52.8 bits)