BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0112.0019.p (695 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KG42.1 B3KG42_9BACI Glycyl-tRNA synthetase, beta subunit EC=6.... 992 0.0 B1DFN6.1 B1DFN6_9BACL Glycyl-tRNA synthetase, beta subunit EC=6.... 862 0.0 C0ZB88.1 C0ZB88_BREBN Glycyl-tRNA synthetase beta chain EC=6.1.1.14 733 0.0 Q9KD48.1 SYGB_BACHD Glycyl-tRNA synthetase beta subunit EC=6.1.1.14 662 0.0 P54381.2 SYGB_BACSU Glycyl-tRNA synthetase beta subunit EC=6.1.1.14 636 e-180 >B3KG42.1 B3KG42_9BACI Glycyl-tRNA synthetase, beta subunit EC=6.1.1.14 Length = 691 Score = 992 bits (2565), Expect = 0.0, Method: Compositional matrix adjust. Identities = 479/692 (69%), Positives = 562/692 (81%), Gaps = 1/692 (0%) Query: 4 LSKDILFEIGLEEVPARFIRAAMEQLKDRTVKWLEASRISHSGVTAYATPRRLAVLVKDA 63 +SKD+LFEIGLEEVPARF+RAAMEQL+D+ VKWLE SRI+H VTA+ATPRRLAV V++ Sbjct: 1 MSKDLLFEIGLEEVPARFLRAAMEQLQDKLVKWLETSRIAHGEVTAFATPRRLAVWVQNV 60 Query: 64 AEKQEDISEEVKGPSRKIALDASGEWSKAALGFARSQGVSPEQFTFKELAGVEYIYATKN 123 A+KQED+SEEVKGPSRKIALD SG+WSKAALGFA+SQGV PE FTFKEL GVEYIY TKN Sbjct: 61 ADKQEDVSEEVKGPSRKIALDDSGQWSKAALGFAKSQGVDPESFTFKELGGVEYIYVTKN 120 Query: 124 SEGVNTSSLLSEGLSGIVSAMTFPKNMRWGAYDFKFVRPIRWLVALFGQEVIDLEITGVK 183 S GV+T S+LSEGL GI+++MTFPKNMRWGA++FKFVRPI+W+VA+ G E +DLEITGVK Sbjct: 121 SVGVDTKSILSEGLLGILTSMTFPKNMRWGAHEFKFVRPIKWMVAMLGSETVDLEITGVK 180 Query: 184 AGNVSRGHRFLGTEAVIAEPAKYVETMRSQHVLVDVKEREELILSQINKLAEEKGWTIAI 243 AGNV+RGHRFLG EAVI E + Y + +R QHV+VDV ER+E+I+SQI LA+EK W IAI Sbjct: 181 AGNVTRGHRFLGGEAVIPEASAYRDVLREQHVIVDVNERQEMIVSQIQALAQEKDWNIAI 240 Query: 244 KDDXXXXXXXXXXXXXXXXGTFDAAFLNIPQDVLITSMREHQRYFPVFDAAGALLSFFVT 303 KDD G+FD++FL+IPQ+VLITSMREHQRYFPV D G LL +FVT Sbjct: 241 KDDLLEEVLFLVETPTVLYGSFDSSFLHIPQEVLITSMREHQRYFPVLDKQGQLLPYFVT 300 Query: 304 VRNGNAESLDVIARGNEKVLRARLSDAKFFYEEDQKLQISDALAKLENIVYHEELGSVGD 363 VR+G++ SLDVIARGNEKVLRARLSDAKFFYEEDQKLQI DAL+KLE+IV+HEELG++GD Sbjct: 301 VRSGDSRSLDVIARGNEKVLRARLSDAKFFYEEDQKLQIKDALSKLESIVFHEELGTIGD 360 Query: 364 KVRRIRAVADRLTVKLGLSAKTAAEVSRTADICKFDLVTQMVNEFSELQGTMGEDYARKA 423 KVRRIR ++D+L+ KL +SA A VSR ADICKFDLVTQMV EF ELQG MGEDYARKA Sbjct: 361 KVRRIRRISDQLSAKLNVSADAADSVSRAADICKFDLVTQMVYEFPELQGVMGEDYARKA 420 Query: 424 GEPEAVARGIFEHYQPRFAGDAVPASEVGLVVSLADKIDTIVGCFSIGIIPTGSQDPYAL 483 GE E VA+ +FEHYQPRFAGD+VP++ VG +VS+ADKIDTIVGCFSIGIIPTGSQDPYAL Sbjct: 421 GEKEHVAKAVFEHYQPRFAGDSVPSTTVGSIVSIADKIDTIVGCFSIGIIPTGSQDPYAL 480 Query: 484 RRQAAGIVQMVLEHKLTVSLEEIFDAALEVHENLRTEKPFAPDLRINLYEFFGLRVKRLL 543 RRQAAGIVQ++LEHKL V+L ++F ALEVHEN+R K ++R +L EFFGLRVK+LL Sbjct: 481 RRQAAGIVQIILEHKLPVTLSDVFGVALEVHENIRVLKRSTDEIRKDLKEFFGLRVKKLL 540 Query: 544 SDNVRYDVVDAVIAAGFDDIVAVVGRSRALMDTVNSQADFKITVDSLTRVSNLAAKAAEG 603 S++ RYDVVDAVI AGFD +V+VV R ALM+ V S DFK TV+S RVSNLAAKA + Sbjct: 541 SEDQRYDVVDAVITAGFDHVVSVVSRGHALMNAVESVQDFKTTVESFNRVSNLAAKAGKA 600 Query: 604 TAVAPSLLKEEAERKLYETWQAIHSPYQXXXXXXXXXXXXXXXSGLKDAVTGFFDSVMVM 663 AV L E E KLYE W AI + Y SGL++ +TGFFDSVMVM Sbjct: 601 -AVNAELFTESEENKLYEAWNAIRADYHAALQAADGERSLSLLSGLREPITGFFDSVMVM 659 Query: 664 AEDEQIRANRLALLAGIDADSKAFADFGKLVW 695 AEDE +RANRLALL+GID D K +ADF KLVW Sbjct: 660 AEDEAVRANRLALLSGIDGDLKRYADFTKLVW 691 >B1DFN6.1 B1DFN6_9BACL Glycyl-tRNA synthetase, beta subunit EC=6.1.1.14 Length = 693 Score = 862 bits (2227), Expect = 0.0, Method: Compositional matrix adjust. Identities = 437/696 (62%), Positives = 529/696 (76%), Gaps = 7/696 (1%) Query: 4 LSKDILFEIGLEEVPARFIRAAMEQLKDRTVKWLEASRISHSGVTAYATPRRLAVLVKDA 63 ++KD+L EIGLEEVPARF+R AM QLK++ VKW + SRI + V +ATPRRLA+ VK Sbjct: 1 MAKDLLLEIGLEEVPARFVRGAMNQLKEKAVKWFDDSRIPYDSVEVFATPRRLALYVKGV 60 Query: 64 AEKQEDISEEVKGPSRKIALDASGEWSKAALGFARSQGVSPEQFTFKELAGVEYIYATKN 123 AEKQED+SE+VKGPSRKIALD G WSKAALGFARSQGV PEQF F+ELAGVEY+YA K+ Sbjct: 61 AEKQEDVSEQVKGPSRKIALDDQGNWSKAALGFARSQGVDPEQFFFQELAGVEYVYANKS 120 Query: 124 SEGVNTSSLLSEGLSGIVSAMTFPKNMRWGAYDFKFVRPIRWLVALFGQEVIDLEITGVK 183 S G T+S+L EGL+ ++++M+FPKNMRWG+Y+ KFVRPI+W++ALFGQE+I +EIT VK Sbjct: 121 SVGTETASVLPEGLTNLITSMSFPKNMRWGSYELKFVRPIKWIIALFGQEIIPIEITNVK 180 Query: 184 AGNVSRGHRFLGTEAVIAEPAKYVETMRSQHVLVDVKEREELILSQINKLAEEKGWTIAI 243 +GNVSRGHRFLG E V+A PA Y E +R QHV+VDV+ERE+LI++QI +LA+EK W IAI Sbjct: 181 SGNVSRGHRFLGEETVVASPADYKERLRQQHVIVDVEEREQLIVAQIQELAKEKNWEIAI 240 Query: 244 KDDXXXXXXXXXXXXXXXXGTFDAAFLNIPQDVLITSMREHQRYFPVFDAAGALLSFFVT 303 K+D GTFD AFLNIPQ+VLITSMREHQRYFPV +A G L FFVT Sbjct: 241 KEDLLEEVLFLVEYPNVLYGTFDPAFLNIPQEVLITSMREHQRYFPVLNAEGQLQPFFVT 300 Query: 304 VRNGNAESLDVIARGNEKVLRARLSDAKFFYEEDQKLQISDALAKLENIVYHEELGSVGD 363 VRNG+ S++ +A+GNEKVLRARLSDAKFFYEEDQKL I+DALAKLENIVYHEELG+V D Sbjct: 301 VRNGDRTSIENVAKGNEKVLRARLSDAKFFYEEDQKLAINDALAKLENIVYHEELGTVAD 360 Query: 364 KVRRIRAVADRLTVKLGLSAKTAAEVSRTADICKFDLVTQMVNEFSELQGTMGEDYARKA 423 KVRRIRA D + +LG TAA SR ADICKFDLVTQMV EF ELQG MGEDYARKA Sbjct: 361 KVRRIRATTDLIASRLGADTDTAAAASRAADICKFDLVTQMVYEFPELQGIMGEDYARKA 420 Query: 424 GEPEAVARGIFEHYQPRFAGDAVPASEVGLVVSLADKIDTIVGCFSIGIIPTGSQDPYAL 483 GE EAVA+ I EHYQPRFAGD PAS G +VSLADK+DTI GCFSIGIIPTGSQDPYAL Sbjct: 421 GESEAVAKAINEHYQPRFAGDRAPASLEGAIVSLADKMDTIAGCFSIGIIPTGSQDPYAL 480 Query: 484 RRQAAGIVQMVLEHKLTVSLEEIFDAALEVHENLRTEKPFAPDLRINLYEFFGLRVKRLL 543 RRQA+GIVQ++L L + L ++F+AALEVHE R K A ++R +L +FF LRVK +L Sbjct: 481 RRQASGIVQIILAQGLDLKLTDLFEAALEVHE-ARGMKRGADEIRKDLNDFFALRVKNVL 539 Query: 544 SDNV-RYDVVDAVIAAGFDDIVAVVGRSRALMDTVNS---QADFKITVDSLTRVSNLAAK 599 S+ RYDVVDAV+A GF+D+ V R+ AL++ ++S +++FK+T+D+ RV NLA+K Sbjct: 540 SEQANRYDVVDAVMATGFNDLRITVERA-ALINDLSSGSERSEFKLTIDAFNRVCNLASK 598 Query: 600 AAEGTAVAPSLLKEEAERKLYETWQAIHSPYQXXXXXXXXXXXXXXXSGLKDAVTGFFDS 659 AE V +L +E AE LYE WQ H S LK A+ +FDS Sbjct: 599 -AESRTVDSALFEEAAEGALYEQWQKAHPAVAAAIAEGDIASALANLSSLKQAINAYFDS 657 Query: 660 VMVMAEDEQIRANRLALLAGIDADSKAFADFGKLVW 695 VMVMA+D+ +R+NRLA L+ I D A ADF KLVW Sbjct: 658 VMVMAKDDAVRSNRLATLSLIADDITAIADFSKLVW 693 >C0ZB88.1 C0ZB88_BREBN Glycyl-tRNA synthetase beta chain EC=6.1.1.14 Length = 689 Score = 733 bits (1893), Expect = 0.0, Method: Compositional matrix adjust. Identities = 365/691 (52%), Positives = 484/691 (70%), Gaps = 7/691 (1%) Query: 6 KDILFEIGLEEVPARFIRAAMEQLKDRTVKWLEASRISHSGVTAYATPRRLAVLVKDAAE 65 +D+L E+GLEE+PARF+ A Q K++ KWL A R+ +TA TPRR A+L+ AE Sbjct: 4 RDLLVEVGLEEMPARFVAQAAAQFKEKVEKWLTAERVPFDQITALETPRRFALLINGLAE 63 Query: 66 KQEDISEEVKGPSRKIALDASGEWSKAALGFARSQGVSPEQFTFKELAGVEYIYATKNSE 125 KQ D ++E KGP+RKIA D +G WSKAALGFARS V P+Q +KE+ G+EY++A K+ Sbjct: 64 KQPDRNDEAKGPARKIAQDEAGNWSKAALGFARSNNVEPDQLYYKEVNGIEYVHARKSEA 123 Query: 126 GVNTSSLLSEGLSGIVSAMTFPKNMRWGAYDFKFVRPIRWLVALFGQEVIDLEITGVKAG 185 G T+ LL + L+ +++ M+FPKNMRWGA + K+VRPIRWLVALFG E+IDLEI GVK+G Sbjct: 124 GKPTTELLPQ-LAEVITGMSFPKNMRWGARELKYVRPIRWLVALFGDELIDLEIAGVKSG 182 Query: 186 NVSRGHRFLGTEAVIAEPAKYVETMRSQHVLVDVKEREELILSQINKLAEEKGWTIAIKD 245 VSRGHRFLGTE + P++YV + Q+V+V ER I+ QI++L +E GWTI + + Sbjct: 183 RVSRGHRFLGTEVTLNHPSEYVSKLAEQYVMVKPDERRATIVEQIHRLEKENGWTIPMDE 242 Query: 246 DXXXXXXXXXXXXXXXXGTFDAAFLNIPQDVLITSMREHQRYFPVFDAAGALLSFFVTVR 305 GTF+ FL+IP++VL+TSMREHQRYFPV +A G LL+ FVTVR Sbjct: 243 GLLDEVVHLVEYPTALYGTFEQEFLSIPREVLVTSMREHQRYFPVENAQGQLLNHFVTVR 302 Query: 306 NGNAESLDVIARGNEKVLRARLSDAKFFYEEDQKLQISDALAKLENIVYHEELGSVGDKV 365 NG++ +L+ +A+GNEKVLRARLSDA+FFY EDQKL I L +LE IVYHEELG++GDKV Sbjct: 303 NGDSRALENVAKGNEKVLRARLSDARFFYVEDQKLSIESCLKRLETIVYHEELGTIGDKV 362 Query: 366 RRIRAVADRLTVKLGLSAKTAAEVSRTADICKFDLVTQMVNEFSELQGTMGEDYARKAGE 425 RR+R A ++ KLG+SA+ +V R A+I KFDLVT MV EF ELQG MGEDYARKAGE Sbjct: 363 RRVRKTAAQIASKLGVSAEETKQVDRIAEIAKFDLVTNMVGEFPELQGIMGEDYARKAGE 422 Query: 426 PEAVARGIFEHYQPRFAGDAVPASEVGLVVSLADKIDTIVGCFSIGIIPTGSQDPYALRR 485 + VA G+FEHY PRFAGD +PAS G +VSLADK+DTIVGCFSIGI+PTGSQDPY LRR Sbjct: 423 SDVVASGVFEHYLPRFAGDKMPASAQGAIVSLADKMDTIVGCFSIGIVPTGSQDPYGLRR 482 Query: 486 QAAGIVQMVLEHKLTVSLEEIFDAALEVHENLRTEKPFAPDLRINLYEFFGLRVKRLLSD 545 AAGIV +++E +SL +++DAA+E + K A D++ +L +FF LR+K +L D Sbjct: 483 MAAGIVTILVERDWQISLADLWDAAMEGYVAQGVNKRAAEDVKKDLVDFFALRLKNVLQD 542 Query: 546 N-VRYDVVDAVIAAGFDDIVAVVGRSRALMDTVNSQADFKITVDSLTRVSNLAAKAAEGT 604 + VRYDV+DAV+AA + V+ +++ALM V ++ +FK+ V+ RV+NLA K AE Sbjct: 543 HGVRYDVIDAVLAADLTLVPEVLAKAKALMGAVQTE-EFKLIVEQFNRVNNLAQK-AEAD 600 Query: 605 AVAPSLLKEEAERKLYETWQAIHSPYQXXXXXXXXXXXXXXXSGLKDAVTGFFDSVMVMA 664 V+ +L E+ ER LY+ +QA+ + S L+ + FFD VMVMA Sbjct: 601 QVSEALFAEDVERALYQAFQAVQKDVE---GLKDQEKVLATLSTLRQPINAFFDKVMVMA 657 Query: 665 EDEQIRANRLALLAGIDADSKAFADFGKLVW 695 ED+ +RANRL LL + +ADF K+V+ Sbjct: 658 EDQAVRANRLGLLLQLSRVLYRYADFSKIVF 688 >Q9KD48.1 SYGB_BACHD Glycyl-tRNA synthetase beta subunit EC=6.1.1.14 Length = 693 Score = 662 bits (1708), Expect = 0.0, Method: Compositional matrix adjust. Identities = 339/691 (49%), Positives = 457/691 (66%), Gaps = 3/691 (0%) Query: 6 KDILFEIGLEEVPARFIRAAMEQLKDRTVKWLEASRISHSGVTAYATPRRLAVLVKDAAE 65 +D L EIGLEE+PARF+ +QL D+ +L+ RIS +++++TPRRLAVLV AE Sbjct: 4 RDFLLEIGLEELPARFVSDGEKQLADKVESFLKEQRISFEQISSFSTPRRLAVLVIGLAE 63 Query: 66 KQEDISEEVKGPSRKIALDASGEWSKAALGFARSQGVSPEQFTFKELAGVEYIYATKNSE 125 KQ D+ EE +GP++KIALD SG W+KAA GFAR QGVS + +E+ G EYI+A K Sbjct: 64 KQADVEEESRGPAKKIALDESGNWTKAAQGFARGQGVSVDDLYIQEVKGTEYIFAKKFVA 123 Query: 126 GVNTSSLLSEGLSGIVSAMTFPKNMRWGAYDFKFVRPIRWLVALFGQEVIDLEITGVKAG 185 G T+SLL E L +++++ FPKNMRW Y ++ RPI+WLVAL+GQEVI EITGV AG Sbjct: 124 GQETASLLPE-LKELITSLHFPKNMRWHTYSLRYARPIQWLVALYGQEVIPFEITGVAAG 182 Query: 186 NVSRGHRFLGTEAVIAEPAKYVETMRSQHVLVDVKEREELILSQINKLAEEKGWTIAIKD 245 + GHRFLG I EP Y E + Q+V+ D +ER++ I QI + EEK W I I + Sbjct: 183 LETAGHRFLGENVTIDEPTLYKEKLLQQYVMADSEERKKAIRHQIQSIMEEKDWVIPIDE 242 Query: 246 DXXXXXXXXXXXXXXXXGTFDAAFLNIPQDVLITSMREHQRYFPVFDAAGALLSFFVTVR 305 D G FD AFL++P +VLITSMREHQRYFPV + AG LL +FVT+R Sbjct: 243 DLLDEVTNLVEYPTALFGRFDEAFLSLPNEVLITSMREHQRYFPVKNQAGELLPYFVTIR 302 Query: 306 NGNAESLDVIARGNEKVLRARLSDAKFFYEEDQKLQISDALAKLENIVYHEELGSVGDKV 365 NG+ L+ I +GNEKVLRARLSDA FFY EDQKL I +A +L+ IVYHEELGS+GDK+ Sbjct: 303 NGDHRHLENIVKGNEKVLRARLSDAAFFYGEDQKLNIDEANKRLDQIVYHEELGSIGDKI 362 Query: 366 RRIRAVADRLTVKLGLSAKTAAEVSRTADICKFDLVTQMVNEFSELQGTMGEDYARKAGE 425 +R++ +A + KLG++++T ++R A+ICKFDLVTQMV EF ELQG MGE YA AGE Sbjct: 363 KRVKVLAASIAEKLGVTSQTLQAINRVAEICKFDLVTQMVGEFPELQGRMGEVYAEIAGE 422 Query: 426 PEAVARGIFEHYQPRFAGDAVPASEVGLVVSLADKIDTIVGCFSIGIIPTGSQDPYALRR 485 P VA+GI EHY PRFAGD P+S G VVSLADK+DTI CF IG+IPTGSQDPYALRR Sbjct: 423 PPEVAKGIVEHYLPRFAGDQSPSSVQGTVVSLADKLDTIAACFGIGLIPTGSQDPYALRR 482 Query: 486 QAAGIVQMVLEHKLTVSLEEIFDAALEVHENLRTEKPFAPDLRINLYEFFGLRVKRLLSD 545 QAAG+VQ++L+H+L + ++E+ +E + ++ L EFF LRVK L D Sbjct: 483 QAAGVVQILLDHELDLDVDELLLETVEQLQEKELLTVPESEVVKQLREFFALRVKTKLQD 542 Query: 546 -NVRYDVVDAVIAAGFDDIVAVVGRSRALMDTVNSQADFKITVDSLTRVSNLAAKAAEGT 604 VRYD+ DAV+A+G ++ V +++ L+ VN+ +FK V+ L+RV+N+A KA + Sbjct: 543 EGVRYDLTDAVLASGISNVPVVFKKAKLLVSKVNT-PEFKELVEGLSRVTNIAGKAEKNV 601 Query: 605 AVAPSLLKEEAERKLYETWQAIHSPYQXXXXXXXXXXXXXXXSGLKDAVTGFFDSVMVMA 664 A+ P L ++E ER LYE + Q + + +F+ VMVM Sbjct: 602 AINPDLFEKEEERVLYEAYVQTKDLVQGALASGDVSAAYAALEQTIEPIHQYFEHVMVMV 661 Query: 665 EDEQIRANRLALLAGIDADSKAFADFGKLVW 695 +++ I+ NRLAL+ ++A+F ++V+ Sbjct: 662 DEQVIKENRLALMHAFAGVIGSYANFQEIVF 692 >P54381.2 SYGB_BACSU Glycyl-tRNA synthetase beta subunit EC=6.1.1.14 Length = 679 Score = 636 bits (1640), Expect = e-180, Method: Compositional matrix adjust. Identities = 316/690 (45%), Positives = 447/690 (64%), Gaps = 17/690 (2%) Query: 6 KDILFEIGLEEVPARFIRAAMEQLKDRTVKWLEASRISHSGVTAYATPRRLAVLVKDAAE 65 +D+L EIGLEE+PARF+ +M QL D+ WL+ I+H V + TPRRLAV VKD AE Sbjct: 4 QDLLLEIGLEEMPARFLNESMVQLGDKLTGWLKEKNITHGEVKLFNTPRRLAVFVKDVAE 63 Query: 66 KQEDISEEVKGPSRKIALDASGEWSKAALGFARSQGVSPEQFTFKELAGVEYIYATKNSE 125 KQ+DI EE KGP++KIALDA G W+KAA+GF++ QG + E KE+ G+EY++ K Sbjct: 64 KQDDIKEEAKGPAKKIALDADGNWTKAAIGFSKGQGANVEDLYIKEVKGIEYVFVQKFQA 123 Query: 126 GVNTSSLLSEGLSGIVSAMTFPKNMRWGAYDFKFVRPIRWLVALFGQEVIDLEITGVKAG 185 G T SLL E LSG+++++ FPKNMRWG D +++RPI+W+VALFGQ+VI IT V++G Sbjct: 124 GQETKSLLPE-LSGLITSLHFPKNMRWGNEDLRYIRPIKWIVALFGQDVIPFSITNVESG 182 Query: 186 NVSRGHRFLGTEAVIAEPAKYVETMRSQHVLVDVKEREELILSQINKLAEEKGWTIAIKD 245 ++GHRFLG E I P+ Y E ++ QHV+ D R+++I SQ+ +A E W+I + + Sbjct: 183 RTTQGHRFLGHEVSIESPSAYEEQLKGQHVIADPSVRKQMIQSQLETMAAENNWSIPVDE 242 Query: 246 DXXXXXXXXXXXXXXXXGTFDAAFLNIPQDVLITSMREHQRYFPVFDAAGALLSFFVTVR 305 D G+F++ FL+IP++VL+T+M+EHQRYFPV D G LL F+TVR Sbjct: 243 DLLDEVNHLVEYPTALYGSFESEFLSIPEEVLVTTMKEHQRYFPVKDKNGDLLPHFITVR 302 Query: 306 NGNAESLDVIARGNEKVLRARLSDAKFFYEEDQKLQISDALAKLENIVYHEELGSVGDKV 365 NGN+ +++ +ARGNEKVLRARLSDA FFY+EDQKL I + KLENIV+HEELGS+ DKV Sbjct: 303 NGNSHAIENVARGNEKVLRARLSDASFFYKEDQKLNIDANVKKLENIVFHEELGSLADKV 362 Query: 366 RRIRAVADRLTVKLGLSAKTAAEVSRTADICKFDLVTQMVNEFSELQGTMGEDYARKAGE 425 RR+ ++A++L V+L T V R A+I KFDLVT M+ EF ELQG MGE YAR GE Sbjct: 363 RRVTSIAEKLAVRLQADEDTLKHVKRAAEISKFDLVTHMIYEFPELQGIMGEKYARMLGE 422 Query: 426 PEAVARGIFEHYQPRFAGDAVPASEVGLVVSLADKIDTIVGCFSIGIIPTGSQDPYALRR 485 EAVA + EHY PR AG P++ G VV++ADK+DTI FSIG+IPTGSQDPY LRR Sbjct: 423 DEAVAAAVNEHYMPRSAGGETPSTFTGAVVAMADKLDTIASFFSIGVIPTGSQDPYGLRR 482 Query: 486 QAAGIVQMVLEHKLTVSLEEIFDAALEVHENLRTEKPFAPDLRINLYEFFGLRVKRLLS- 544 QA+GIV ++L+ +S EE+ EN L +FF R+K +L+ Sbjct: 483 QASGIVAILLDRNWGISFEELLTFVQTDKEN-------------ELLDFFTQRLKYVLNA 529 Query: 545 DNVRYDVVDAVIAAGFDDIVAVVGRSRALMDTVNSQADFKITVDSLTRVSNLAAKAAEGT 604 + +R+DV+DAV+ + + + + +++ L + + FK T ++L RV +++ K G Sbjct: 530 EQIRHDVIDAVLESSELEPYSALHKAQVLEQKLGAPG-FKETAEALGRVISISKKGVRGD 588 Query: 605 AVAPSLLKEEAERKLYETWQAIHSPYQXXXXXXXXXXXXXXXSGLKDAVTGFFDSVMVMA 664 + P L + E E KL++ +Q Q + LK+ + +FD MV+A Sbjct: 589 -IQPDLFENEYEAKLFDAYQTAKQNLQENFSKKDYEAALASLAALKEPIDAYFDHTMVIA 647 Query: 665 EDEQIRANRLALLAGIDADSKAFADFGKLV 694 ++E ++ANRLA + + + K+FA+ L+ Sbjct: 648 DNESLKANRLAQMVSLADEIKSFANMNALI 677 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.134 0.375 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 3,579,092,499 Number of extensions: 137489262 Number of successful extensions: 394876 Number of sequences better than 1.0e-05: 1048 Number of HSP's gapped: 389618 Number of HSP's successfully gapped: 1098 Length of query: 695 Length of database: 3,060,696,203 Length adjustment: 143 Effective length of query: 552 Effective length of database: 1,713,491,058 Effective search space: 945847064016 Effective search space used: 945847064016 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 135 (56.6 bits)