BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0112.0018.p (295 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KG41.1 B3KG41_9BACI Glycyl-tRNA synthetase, alpha subunit EC=6... 552 e-155 B1DFN7.1 B1DFN7_9BACL Glycyl-tRNA synthetase, alpha subunit EC=6... 530 e-149 Q9KD49.1 SYGA_BACHD Glycyl-tRNA synthetase alpha subunit EC=6.1.... 518 e-145 C0ZB87.1 SYGA_BREBN Glycyl-tRNA synthetase alpha subunit EC=6.1.... 512 e-143 Q5WHD6.1 SYGA_BACSK Glycyl-tRNA synthetase alpha subunit EC=6.1.... 511 e-143 >B3KG41.1 B3KG41_9BACI Glycyl-tRNA synthetase, alpha subunit EC=6.1.1.14 Length = 295 Score = 552 bits (1423), Expect = e-155, Method: Compositional matrix adjust. Identities = 259/295 (87%), Positives = 277/295 (93%) Query: 1 MNFQQMILTLQQFWSAQNCILVQPYDTEKGAGTMNPMTFLRSLGPEPWKVAYVEPSRRPS 60 MNFQQMILTLQQFW+ QNCI+VQPYDTEKGAGTMNPMT+LRS+GPEPW VAYVEPSRRP+ Sbjct: 1 MNFQQMILTLQQFWAEQNCIIVQPYDTEKGAGTMNPMTYLRSIGPEPWNVAYVEPSRRPA 60 Query: 61 DGRYGENPNRLYQHHQFQVIIKPSPDNIQELYLDSLKALGVDPLLHDIRFVEDNWENPSL 120 DGRYGENPNRLYQHHQFQVI+KPSPDNIQELYL+SLK LG++PL HDIRFVEDNWE P+L Sbjct: 61 DGRYGENPNRLYQHHQFQVILKPSPDNIQELYLESLKRLGINPLDHDIRFVEDNWEAPTL 120 Query: 121 GCAGLGWEVWLDGMEITQFTYFQQVGGIETSPVAVEITYGMERLASYIQEKENVFDLEWV 180 G GLGWEVWLDGMEITQFTYFQQVGGI+ +PVAVEITYGMERLASYIQ+KENVFDLEWV Sbjct: 121 GAWGLGWEVWLDGMEITQFTYFQQVGGIDANPVAVEITYGMERLASYIQDKENVFDLEWV 180 Query: 181 GGMTYGDVFHQPEVEHSTYTFEVSDVKMLFTLFNTYEEEARRAMEQHLVFPAYDYVLKCS 240 G+TYGDVFHQPE EHS YTFEVSDVKMLFTLFN YEEEA +AM QHLVFPAYDYVLKCS Sbjct: 181 DGITYGDVFHQPEFEHSKYTFEVSDVKMLFTLFNMYEEEANKAMNQHLVFPAYDYVLKCS 240 Query: 241 HTFNLLDARGAISVTERTGFITRVRNLARTVAATYLEEREKLGFPLLKKEGADLV 295 HTFNLLDARGAISVTERTG+I RVRNLAR VAATYLEEREKLGFPL+KK GA+ V Sbjct: 241 HTFNLLDARGAISVTERTGYIMRVRNLARQVAATYLEEREKLGFPLIKKGGAEHV 295 >B1DFN7.1 B1DFN7_9BACL Glycyl-tRNA synthetase, alpha subunit EC=6.1.1.14 Length = 295 Score = 530 bits (1365), Expect = e-149, Method: Compositional matrix adjust. Identities = 248/289 (85%), Positives = 266/289 (92%) Query: 1 MNFQQMILTLQQFWSAQNCILVQPYDTEKGAGTMNPMTFLRSLGPEPWKVAYVEPSRRPS 60 MNFQ MILTLQQFW+ QNCILVQPYDTEKGAGTMNPMTFLR++GPEPW VAYVEPSRRP+ Sbjct: 1 MNFQNMILTLQQFWAEQNCILVQPYDTEKGAGTMNPMTFLRTIGPEPWNVAYVEPSRRPA 60 Query: 61 DGRYGENPNRLYQHHQFQVIIKPSPDNIQELYLDSLKALGVDPLLHDIRFVEDNWENPSL 120 DGRYGENPNRLYQHHQFQVI+KPSPDNIQELYL+SLK LG+DP HDIRFVEDNWE+P+L Sbjct: 61 DGRYGENPNRLYQHHQFQVILKPSPDNIQELYLESLKRLGIDPRHHDIRFVEDNWESPTL 120 Query: 121 GCAGLGWEVWLDGMEITQFTYFQQVGGIETSPVAVEITYGMERLASYIQEKENVFDLEWV 180 G GLGWEVWL+GMEITQFTYFQQVGGI+ +PVAVEITYGMERLASYIQEKENVFDLEWV Sbjct: 121 GAWGLGWEVWLNGMEITQFTYFQQVGGIDANPVAVEITYGMERLASYIQEKENVFDLEWV 180 Query: 181 GGMTYGDVFHQPEVEHSTYTFEVSDVKMLFTLFNTYEEEARRAMEQHLVFPAYDYVLKCS 240 G+TYGDVF QPE EHS YTFE SD MLF LFN YEEEA++ ME +LVFPAYDYVLKCS Sbjct: 181 DGVTYGDVFLQPEFEHSKYTFETSDSAMLFQLFNMYEEEAKKTMEHNLVFPAYDYVLKCS 240 Query: 241 HTFNLLDARGAISVTERTGFITRVRNLARTVAATYLEEREKLGFPLLKK 289 HTFNLLDARGAISVTERTG+I RVRNLAR AATYLEERE+LGFPLLKK Sbjct: 241 HTFNLLDARGAISVTERTGYIMRVRNLARACAATYLEERERLGFPLLKK 289 >Q9KD49.1 SYGA_BACHD Glycyl-tRNA synthetase alpha subunit EC=6.1.1.14 Length = 297 Score = 518 bits (1335), Expect = e-145, Method: Compositional matrix adjust. Identities = 240/293 (81%), Positives = 265/293 (90%) Query: 1 MNFQQMILTLQQFWSAQNCILVQPYDTEKGAGTMNPMTFLRSLGPEPWKVAYVEPSRRPS 60 MN Q MILTLQ++WS QNCIL+Q YDTEKGAGTM+P T LR++GPEPW VAYVEPSRRP+ Sbjct: 1 MNVQTMILTLQEYWSKQNCILLQAYDTEKGAGTMSPYTMLRTIGPEPWNVAYVEPSRRPA 60 Query: 61 DGRYGENPNRLYQHHQFQVIIKPSPDNIQELYLDSLKALGVDPLLHDIRFVEDNWENPSL 120 DGRYGENPNRLYQHHQFQVI+KPSP NIQELYLDSL+ALG++PL HDIRFVEDNWENPSL Sbjct: 61 DGRYGENPNRLYQHHQFQVIMKPSPTNIQELYLDSLRALGINPLEHDIRFVEDNWENPSL 120 Query: 121 GCAGLGWEVWLDGMEITQFTYFQQVGGIETSPVAVEITYGMERLASYIQEKENVFDLEWV 180 GCAGLGWEVWLDGMEITQFTYFQQVGG+E +PV+ EITYG+ERLASYIQ+KENVFDLEWV Sbjct: 121 GCAGLGWEVWLDGMEITQFTYFQQVGGLEANPVSAEITYGLERLASYIQDKENVFDLEWV 180 Query: 181 GGMTYGDVFHQPEVEHSTYTFEVSDVKMLFTLFNTYEEEARRAMEQHLVFPAYDYVLKCS 240 G TYGD+F QPE EHS YTFEVSD MLF LF+TYE+EA RA+E++LVFPAYDYVLKCS Sbjct: 181 EGFTYGDIFTQPEYEHSKYTFEVSDSAMLFELFSTYEKEADRALEENLVFPAYDYVLKCS 240 Query: 241 HTFNLLDARGAISVTERTGFITRVRNLARTVAATYLEEREKLGFPLLKKEGAD 293 HTFNLLDARGAISVTERTG+I RVRNLAR A Y EEREKLGFP+LK + AD Sbjct: 241 HTFNLLDARGAISVTERTGYIGRVRNLARKCAKKYYEEREKLGFPMLKNKEAD 293 >C0ZB87.1 SYGA_BREBN Glycyl-tRNA synthetase alpha subunit EC=6.1.1.14 Length = 308 Score = 512 bits (1318), Expect = e-143, Method: Compositional matrix adjust. Identities = 236/293 (80%), Positives = 263/293 (89%) Query: 1 MNFQQMILTLQQFWSAQNCILVQPYDTEKGAGTMNPMTFLRSLGPEPWKVAYVEPSRRPS 60 M FQ +ILTLQ FW+ QNC++VQPYD EKGAGT+NPMTFLRS+GPEPW VAYVEPSRRP+ Sbjct: 1 MTFQDIILTLQNFWAKQNCLIVQPYDVEKGAGTLNPMTFLRSIGPEPWNVAYVEPSRRPA 60 Query: 61 DGRYGENPNRLYQHHQFQVIIKPSPDNIQELYLDSLKALGVDPLLHDIRFVEDNWENPSL 120 DGRYGENPNRLYQHHQFQVI+KPSPDNIQELYL+SL+ LG++PL HDIRFVEDNWE+P L Sbjct: 61 DGRYGENPNRLYQHHQFQVIMKPSPDNIQELYLESLRELGIEPLEHDIRFVEDNWEHPGL 120 Query: 121 GCAGLGWEVWLDGMEITQFTYFQQVGGIETSPVAVEITYGMERLASYIQEKENVFDLEWV 180 G GLGWEVWLDGMEITQFTYFQQVGG+E PVAVE+TYG+ERLASYIQEKENVFDLEW Sbjct: 121 GAWGLGWEVWLDGMEITQFTYFQQVGGLECKPVAVELTYGLERLASYIQEKENVFDLEWC 180 Query: 181 GGMTYGDVFHQPEVEHSTYTFEVSDVKMLFTLFNTYEEEARRAMEQHLVFPAYDYVLKCS 240 G TYGDVF QPE EHS YTFE+SDV MLF+L+NTYE EA+R M + LV+PAYDYVLKCS Sbjct: 181 NGYTYGDVFLQPEYEHSKYTFELSDVDMLFSLYNTYEAEAKRLMAERLVYPAYDYVLKCS 240 Query: 241 HTFNLLDARGAISVTERTGFITRVRNLARTVAATYLEEREKLGFPLLKKEGAD 293 HTFNLLDARGAISVTERTG+I RVRNL+R VA TY +ERE+LGFPLL+K AD Sbjct: 241 HTFNLLDARGAISVTERTGYIARVRNLSREVAQTYYKERERLGFPLLQKGNAD 293 >Q5WHD6.1 SYGA_BACSK Glycyl-tRNA synthetase alpha subunit EC=6.1.1.14 Length = 295 Score = 511 bits (1317), Expect = e-143, Method: Compositional matrix adjust. Identities = 235/292 (80%), Positives = 262/292 (89%) Query: 1 MNFQQMILTLQQFWSAQNCILVQPYDTEKGAGTMNPMTFLRSLGPEPWKVAYVEPSRRPS 60 MN Q MILTLQ FW+ QNCI++ YDTEKGAGTM+P T LR++GPEPW VAYVEPSRRP+ Sbjct: 1 MNVQTMILTLQSFWAKQNCIILNAYDTEKGAGTMSPHTLLRTIGPEPWNVAYVEPSRRPA 60 Query: 61 DGRYGENPNRLYQHHQFQVIIKPSPDNIQELYLDSLKALGVDPLLHDIRFVEDNWENPSL 120 DGRYGENPNRLYQHHQFQVI+KPSP NIQELYLDSL+ALG+DPL HDIRFVEDNWENP+L Sbjct: 61 DGRYGENPNRLYQHHQFQVIMKPSPLNIQELYLDSLRALGIDPLKHDIRFVEDNWENPTL 120 Query: 121 GCAGLGWEVWLDGMEITQFTYFQQVGGIETSPVAVEITYGMERLASYIQEKENVFDLEWV 180 GCAGLGWEVWLDGMEITQFTYFQQVGG+E +PV+ EITYG+ERLA+YIQ+KENVFDLEWV Sbjct: 121 GCAGLGWEVWLDGMEITQFTYFQQVGGMEANPVSAEITYGLERLATYIQDKENVFDLEWV 180 Query: 181 GGMTYGDVFHQPEVEHSTYTFEVSDVKMLFTLFNTYEEEARRAMEQHLVFPAYDYVLKCS 240 G TYGD+F QPE EHSTYTFEVS+V MLF LF+TYE+EA RA+ + LVFPAYDY+LKCS Sbjct: 181 EGFTYGDIFLQPEYEHSTYTFEVSNVDMLFDLFSTYEKEAERALARDLVFPAYDYILKCS 240 Query: 241 HTFNLLDARGAISVTERTGFITRVRNLARTVAATYLEEREKLGFPLLKKEGA 292 H+FNLLDARGAISVTERTG+I RVR LAR A Y EEREKLGFP+LKKE A Sbjct: 241 HSFNLLDARGAISVTERTGYIARVRTLARKAARKYYEEREKLGFPMLKKEDA 292 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.137 0.420 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,854,317,535 Number of extensions: 77515779 Number of successful extensions: 156254 Number of sequences better than 1.0e-05: 1040 Number of HSP's gapped: 155219 Number of HSP's successfully gapped: 1041 Length of query: 295 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 161 Effective length of database: 1,798,280,193 Effective search space: 289523111073 Effective search space used: 289523111073 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)