BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0112.0015.p (309 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KG38.1 B3KG38_9BACI GTP-binding protein Era 487 e-136 B1DFP0.1 B1DFP0_9BACL GTP-binding protein Era 484 e-135 Q818G1.1 Q818G1_BACCR GTP-binding protein 426 e-117 B7HCS4.1 B7HCS4_BACC4 GTP-binding protein Era 426 e-117 C5D4S5.1 C5D4S5_9BACI GTP-binding protein Era 425 e-117 >B3KG38.1 B3KG38_9BACI GTP-binding protein Era Length = 279 Score = 487 bits (1253), Expect = e-136, Method: Compositional matrix adjust. Identities = 232/268 (86%), Positives = 252/268 (94%) Query: 14 KFKSGFVAIIGRPNVGKSTLMNQVIGQKIAIMSDKPQTTRNKIHGVYTANNSQIVFLDTP 73 +FKSGFVAIIGRPNVGKSTLMNQVIGQKIAIMSDKPQTTRNKIHGVYT +SQ+VFLDTP Sbjct: 5 QFKSGFVAIIGRPNVGKSTLMNQVIGQKIAIMSDKPQTTRNKIHGVYTTPDSQVVFLDTP 64 Query: 74 GIHKRQSKLGDYMNQTAMSTLHEVEAVLFLVDASEGMGGGDRYIAEQLKDVKTPVILVMN 133 GIHKRQSKLGDYMNQTA+STL EVEA LFLVDASEG+GGGDRYIAEQL+ +KTP+ILVMN Sbjct: 65 GIHKRQSKLGDYMNQTALSTLGEVEAALFLVDASEGIGGGDRYIAEQLQKIKTPIILVMN 124 Query: 134 KIDKIEPEALLPLITEYNKLHEFAEIVPISAKLGSNVNTLLDQVVKYLPEGPQYYPEDQI 193 KIDKIEP ALLPLI +Y KLH+FAEIVPISAKLGSNVNTLL+Q+ KYLP GPQYYPEDQ+ Sbjct: 125 KIDKIEPPALLPLIEQYRKLHDFAEIVPISAKLGSNVNTLLEQIQKYLPPGPQYYPEDQV 184 Query: 194 TDHPEQFVCAELIREKILHLTREEVPHSIAVAIEDMRVESNGVVHVSAVIFVERDSQKGI 253 TDHPEQFVCAELIREKILH+TREEVPHSIAV IEDMRVE NG V++SAVIFVERDSQKGI Sbjct: 185 TDHPEQFVCAELIREKILHMTREEVPHSIAVTIEDMRVEENGTVYISAVIFVERDSQKGI 244 Query: 254 IIGKQGAMLKEVGRRARTDIENLLGSKI 281 IIGKQGA+LKEVGR+AR DI+ LLGS+ Sbjct: 245 IIGKQGALLKEVGRQARQDIQRLLGSRF 272 >B1DFP0.1 B1DFP0_9BACL GTP-binding protein Era Length = 299 Score = 484 bits (1245), Expect = e-135, Method: Compositional matrix adjust. Identities = 230/295 (77%), Positives = 259/295 (87%) Query: 14 KFKSGFVAIIGRPNVGKSTLMNQVIGQKIAIMSDKPQTTRNKIHGVYTANNSQIVFLDTP 73 KF+SGFVAIIGRPNVGKSTLMN +IGQKIAIMSDKPQTTRNKIHGVYT + SQIVFLDTP Sbjct: 5 KFRSGFVAIIGRPNVGKSTLMNHLIGQKIAIMSDKPQTTRNKIHGVYTTDTSQIVFLDTP 64 Query: 74 GIHKRQSKLGDYMNQTAMSTLHEVEAVLFLVDASEGMGGGDRYIAEQLKDVKTPVILVMN 133 GIHK QSKLGDYM +TA L EVEAVLFL+D ++G+GGGDR+I EQLK V TPV LVMN Sbjct: 65 GIHKPQSKLGDYMMKTAEGALKEVEAVLFLIDVADGLGGGDRFIIEQLKKVDTPVFLVMN 124 Query: 134 KIDKIEPEALLPLITEYNKLHEFAEIVPISAKLGSNVNTLLDQVVKYLPEGPQYYPEDQI 193 KIDK++PE LL IT+Y L+ FAEIVPISA G+NV TLL Q+ KYLPEGPQYYP DQ+ Sbjct: 125 KIDKVQPEQLLSTITQYKDLYPFAEIVPISALQGNNVETLLAQLQKYLPEGPQYYPADQV 184 Query: 194 TDHPEQFVCAELIREKILHLTREEVPHSIAVAIEDMRVESNGVVHVSAVIFVERDSQKGI 253 TDHPEQFV +ELIREKILH+TREE+PHSIAV IEDM+V+ NGVV++ AVIFVERDSQKGI Sbjct: 185 TDHPEQFVVSELIREKILHMTREEIPHSIAVGIEDMKVQENGVVYIGAVIFVERDSQKGI 244 Query: 254 IIGKQGAMLKEVGRRARTDIENLLGSKIFLELWVKVKKDWRNQERVLRDLGFHKD 308 IIGK+GA+LKEVG++AR DIE LLGS+ FLELWVKVKKDWRNQERVL+D GF D Sbjct: 245 IIGKKGALLKEVGKQARRDIEALLGSRTFLELWVKVKKDWRNQERVLKDFGFRHD 299 >Q818G1.1 Q818G1_BACCR GTP-binding protein Length = 301 Score = 426 bits (1094), Expect = e-117, Method: Compositional matrix adjust. Identities = 200/294 (68%), Positives = 247/294 (84%) Query: 15 FKSGFVAIIGRPNVGKSTLMNQVIGQKIAIMSDKPQTTRNKIHGVYTANNSQIVFLDTPG 74 +KSGFV+IIGRPNVGKST +N++IGQKIAIMSDKPQTTRNKI GVYT N++Q++F+DTPG Sbjct: 6 YKSGFVSIIGRPNVGKSTFLNRIIGQKIAIMSDKPQTTRNKIQGVYTENDAQVIFIDTPG 65 Query: 75 IHKRQSKLGDYMNQTAMSTLHEVEAVLFLVDASEGMGGGDRYIAEQLKDVKTPVILVMNK 134 IHK + KLGD+M + A +TL EV+ VLF+V+A EG G G+ +I E+LK+ K PV LV+NK Sbjct: 66 IHKPKHKLGDFMVKMAQTTLKEVDIVLFMVNAVEGFGRGEEFIIEKLKETKQPVFLVINK 125 Query: 135 IDKIEPEALLPLITEYNKLHEFAEIVPISAKLGSNVNTLLDQVVKYLPEGPQYYPEDQIT 194 ID++ PE LL LI +Y KLHEFAEIVPISA G+NV+ L+ + KYLPEGPQYYPE+Q+T Sbjct: 126 IDQLHPEQLLELIDQYRKLHEFAEIVPISALDGNNVDALIGTIKKYLPEGPQYYPENQVT 185 Query: 195 DHPEQFVCAELIREKILHLTREEVPHSIAVAIEDMRVESNGVVHVSAVIFVERDSQKGII 254 DHPE+F+ AELIREK+LHLTREEVPHS+AV I+ ++ G V+++A I VER SQKGII Sbjct: 186 DHPERFIIAELIREKVLHLTREEVPHSVAVVIDAIQKREGGAVYINATIVVERASQKGII 245 Query: 255 IGKQGAMLKEVGRRARTDIENLLGSKIFLELWVKVKKDWRNQERVLRDLGFHKD 308 IGKQG MLKEVG+RAR DIE LLGSK+FLE+WVKV+KDWRN+ LRDLGF +D Sbjct: 246 IGKQGKMLKEVGKRARFDIEALLGSKVFLEVWVKVQKDWRNKMSQLRDLGFRED 299 >B7HCS4.1 B7HCS4_BACC4 GTP-binding protein Era Length = 301 Score = 426 bits (1094), Expect = e-117, Method: Compositional matrix adjust. Identities = 200/294 (68%), Positives = 247/294 (84%) Query: 15 FKSGFVAIIGRPNVGKSTLMNQVIGQKIAIMSDKPQTTRNKIHGVYTANNSQIVFLDTPG 74 +KSGFV+IIGRPNVGKST +N++IGQKIAIMSDKPQTTRNKI GVYT N++Q++F+DTPG Sbjct: 6 YKSGFVSIIGRPNVGKSTFLNRIIGQKIAIMSDKPQTTRNKIQGVYTENDAQVIFIDTPG 65 Query: 75 IHKRQSKLGDYMNQTAMSTLHEVEAVLFLVDASEGMGGGDRYIAEQLKDVKTPVILVMNK 134 IHK + KLGD+M + A +TL EV+ VLF+V+A EG G G+ +I E+LK+ K PV LV+NK Sbjct: 66 IHKPKHKLGDFMVKMAQTTLKEVDIVLFMVNAVEGFGRGEEFIIEKLKETKQPVFLVINK 125 Query: 135 IDKIEPEALLPLITEYNKLHEFAEIVPISAKLGSNVNTLLDQVVKYLPEGPQYYPEDQIT 194 ID++ PE LL LI +Y KLHEFAEIVPISA G+NV+ L+ + KYLPEGPQYYPE+Q+T Sbjct: 126 IDQLHPEQLLELIDQYRKLHEFAEIVPISALDGNNVDALIGTIKKYLPEGPQYYPENQVT 185 Query: 195 DHPEQFVCAELIREKILHLTREEVPHSIAVAIEDMRVESNGVVHVSAVIFVERDSQKGII 254 DHPE+F+ AELIREK+LHLTREEVPHS+AV I+ ++ G V+++A I VER SQKGII Sbjct: 186 DHPERFIIAELIREKVLHLTREEVPHSVAVVIDAIQKREGGAVYINATIVVERASQKGII 245 Query: 255 IGKQGAMLKEVGRRARTDIENLLGSKIFLELWVKVKKDWRNQERVLRDLGFHKD 308 IGKQG MLKEVG+RAR DIE LLGSK+FLE+WVKV+KDWRN+ LRDLGF +D Sbjct: 246 IGKQGKMLKEVGKRARFDIEALLGSKVFLEVWVKVQKDWRNKMSQLRDLGFRED 299 >C5D4S5.1 C5D4S5_9BACI GTP-binding protein Era Length = 302 Score = 425 bits (1093), Expect = e-117, Method: Compositional matrix adjust. Identities = 201/295 (68%), Positives = 247/295 (83%), Gaps = 1/295 (0%) Query: 15 FKSGFVAIIGRPNVGKSTLMNQVIGQKIAIMSDKPQTTRNKIHGVYTANNSQIVFLDTPG 74 +KSGFV+I+GRPNVGKST +N+VIGQKIAIMSDKPQTTRNKI GVYT +++QI+F+DTPG Sbjct: 6 YKSGFVSIVGRPNVGKSTFLNRVIGQKIAIMSDKPQTTRNKIQGVYTTDDAQIIFIDTPG 65 Query: 75 IHKRQSKLGDYMNQTAMSTLHEVEAVLFLVDASEGMGGGDRYIAEQLKDVKTPVILVMNK 134 +HK + KLGD+M + A++ L EV+ +LF+++A EG G GD +I EQLK V TPV LV+NK Sbjct: 66 MHKPKHKLGDFMMKVALNALREVDLILFMINAEEGFGRGDAFIIEQLKAVNTPVFLVINK 125 Query: 135 IDKIEPEALLPLITEYNKLHEFAEIVPISAKLGSNVNTLLDQVVKYLPEGPQYYPEDQIT 194 IDK+ P+ LLPLI +Y L+ FAEI+PISA G+N+ TL++Q+ KYLPEGPQYYP DQIT Sbjct: 126 IDKVHPDDLLPLIDQYKDLYPFAEIIPISALQGNNIETLVEQIKKYLPEGPQYYPPDQIT 185 Query: 195 DHPEQFVCAELIREKILHLTREEVPHSIAVAIEDM-RVESNGVVHVSAVIFVERDSQKGI 253 DHPE+F+ AELIREK LHLTREEVPHSIAV +E + R E + V+V AVI VERDSQKGI Sbjct: 186 DHPERFIIAELIREKALHLTREEVPHSIAVVVETIERREDSDTVYVGAVIIVERDSQKGI 245 Query: 254 IIGKQGAMLKEVGRRARTDIENLLGSKIFLELWVKVKKDWRNQERVLRDLGFHKD 308 IIGKQG MLKE+G+RAR DIE LLGSK+FLELWVKV+KDWRN+ LRD GF ++ Sbjct: 246 IIGKQGRMLKEIGQRARMDIEALLGSKVFLELWVKVQKDWRNRLAQLRDFGFREE 300 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.136 0.386 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,779,180,553 Number of extensions: 72478523 Number of successful extensions: 310618 Number of sequences better than 1.0e-05: 5376 Number of HSP's gapped: 307282 Number of HSP's successfully gapped: 6859 Length of query: 309 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 174 Effective length of database: 1,788,859,178 Effective search space: 311261496972 Effective search space used: 311261496972 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 131 (55.1 bits)