BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0112.0014.p (139 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KG37.1 B3KG37_9BACI Cytidine deaminase 229 8e-59 B1DFP1.1 B1DFP1_9BACL Cytidine deaminase 196 4e-49 C2WC83.1 C2WC83_BACCE Cytidine deaminase 181 1e-44 C2PK17.1 C2PK17_BACCE Cytidine deaminase 181 2e-44 Q81LT6.1 Q81LT6_BACAN Cytidine deaminase 180 4e-44 >B3KG37.1 B3KG37_9BACI Cytidine deaminase Length = 135 Score = 229 bits (583), Expect = 8e-59, Method: Compositional matrix adjust. Identities = 104/134 (77%), Positives = 121/134 (90%) Query: 1 MESALLLQEAIKARANAYIPYSRFGVGAALLDQDGHVHHGCNVENAAFGPTNCAERTALF 60 M+ LL+QEAIKAR AYIPYS+FGVGAALLD G VH GCNVENAA+GPTNCAERTALF Sbjct: 1 MDEGLLMQEAIKARTRAYIPYSKFGVGAALLDSRGQVHLGCNVENAAYGPTNCAERTALF 60 Query: 61 RAIADGHKAGTFKAIAVIADTDGPVSPCGVCRQVMVELCAPDMKVILGNLRGDIQETTVR 120 RAIADGH+AG+F+AIA++ADTDGP +PCGVCRQV+VELC PDMKVI+GN++GDI+ETTV Sbjct: 61 RAIADGHEAGSFQAIAIVADTDGPCTPCGVCRQVLVELCKPDMKVIMGNMKGDIKETTVS 120 Query: 121 DLLPGAFGPTDLEQ 134 +LLPGAFGP DL + Sbjct: 121 ELLPGAFGPWDLNK 134 >B1DFP1.1 B1DFP1_9BACL Cytidine deaminase Length = 143 Score = 196 bits (499), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 90/131 (68%), Positives = 106/131 (80%) Query: 6 LLQEAIKARANAYIPYSRFGVGAALLDQDGHVHHGCNVENAAFGPTNCAERTALFRAIAD 65 LL+ A +A + AY+PYS F VGAALLD+ GHVH GCNVENAA+ P NCAERTALFRAIAD Sbjct: 13 LLEAAKEAMSRAYVPYSNFRVGAALLDESGHVHSGCNVENAAYSPCNCAERTALFRAIAD 72 Query: 66 GHKAGTFKAIAVIADTDGPVSPCGVCRQVMVELCAPDMKVILGNLRGDIQETTVRDLLPG 125 G + G F+AIAV+ DTDGP++PCGVCRQV+VELC PDM V++GNLRGD TV +LLPG Sbjct: 73 GKRPGEFQAIAVMGDTDGPITPCGVCRQVLVELCEPDMPVVMGNLRGDWNIMTVSELLPG 132 Query: 126 AFGPTDLEQGQ 136 AF P LE+G Sbjct: 133 AFTPASLEKGS 143 >C2WC83.1 C2WC83_BACCE Cytidine deaminase Length = 132 Score = 181 bits (460), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 89/134 (66%), Positives = 105/134 (78%), Gaps = 2/134 (1%) Query: 1 MESALLLQEAIKARANAYIPYSRFGVGAALLDQDGHVHHGCNVENAAFGPTNCAERTALF 60 M S L+QEAI+AR AY+PYS+F VGAALL +DG V+ GCNVENA++G NCAERTALF Sbjct: 1 MNSKELIQEAIEARKQAYVPYSKFQVGAALLTEDGKVYRGCNVENASYGLCNCAERTALF 60 Query: 61 RAIADGHKAGTFKAIAVIADTDGPVSPCGVCRQVMVELCAPDMKVILGNLRGDIQETTVR 120 +AI++G KA F AIAV+ADT+ PV PCG CRQVM+ELC D KV L NL GDIQETTV Sbjct: 61 KAISEGDKA--FVAIAVVADTNRPVPPCGACRQVMIELCKQDTKVYLSNLHGDIQETTVG 118 Query: 121 DLLPGAFGPTDLEQ 134 +LLPGAF DL + Sbjct: 119 ELLPGAFLAEDLHE 132 >C2PK17.1 C2PK17_BACCE Cytidine deaminase Length = 132 Score = 181 bits (459), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 89/134 (66%), Positives = 103/134 (76%), Gaps = 2/134 (1%) Query: 1 MESALLLQEAIKARANAYIPYSRFGVGAALLDQDGHVHHGCNVENAAFGPTNCAERTALF 60 M S L+QEAI+AR AY+PYS+F VGAALL QDG V+ GCNVENA++G NCAERTALF Sbjct: 1 MNSKQLIQEAIEARKQAYVPYSKFQVGAALLTQDGKVYRGCNVENASYGLCNCAERTALF 60 Query: 61 RAIADGHKAGTFKAIAVIADTDGPVSPCGVCRQVMVELCAPDMKVILGNLRGDIQETTVR 120 +AI++G K F AIAV+ADT PV PCG CRQVMVELC D KV L NL GD+QETTV Sbjct: 61 KAISEGDK--EFVAIAVVADTKRPVPPCGACRQVMVELCKQDTKVYLSNLHGDVQETTVG 118 Query: 121 DLLPGAFGPTDLEQ 134 +LLPGAF DL + Sbjct: 119 ELLPGAFLAEDLHE 132 >Q81LT6.1 Q81LT6_BACAN Cytidine deaminase Length = 132 Score = 180 bits (456), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 87/134 (64%), Positives = 103/134 (76%), Gaps = 2/134 (1%) Query: 1 MESALLLQEAIKARANAYIPYSRFGVGAALLDQDGHVHHGCNVENAAFGPTNCAERTALF 60 M S L+QEAI+AR AY+PYS+F VGAALL QDG V+ GCNVENA++G NCAERTALF Sbjct: 1 MNSKQLIQEAIEARKQAYVPYSKFQVGAALLTQDGKVYRGCNVENASYGLCNCAERTALF 60 Query: 61 RAIADGHKAGTFKAIAVIADTDGPVSPCGVCRQVMVELCAPDMKVILGNLRGDIQETTVR 120 +A+++G K F AIA++ADT PV PCG CRQVMVELC D KV L NL GD+QETTV Sbjct: 61 KAVSEGDK--EFVAIAIVADTKRPVPPCGACRQVMVELCKQDTKVYLSNLHGDVQETTVG 118 Query: 121 DLLPGAFGPTDLEQ 134 +LLPGAF DL + Sbjct: 119 ELLPGAFLAEDLHE 132 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.137 0.415 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 815,756,284 Number of extensions: 29887319 Number of successful extensions: 60246 Number of sequences better than 1.0e-05: 1077 Number of HSP's gapped: 59111 Number of HSP's successfully gapped: 1077 Length of query: 139 Length of database: 3,060,696,203 Length adjustment: 103 Effective length of query: 36 Effective length of database: 2,090,331,658 Effective search space: 75251939688 Effective search space used: 75251939688 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 125 (52.8 bits)