BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0112.0008.p
         (97 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B1DFP7.1 B1DFP7_9BACL Sporulation protein YqfC                        117   4e-25
B3KG31.1 B3KG31_9BACI Sporulation protein YqfC                        112   7e-24
C0ZB78.1 C0ZB78_BREBN Putative uncharacterized protein yqfC           108   1e-22
Q5WHE6.1 Q5WHE6_BACSK Putative uncharacterized protein                 94   5e-18
A7GT01.1 A7GT01_BACCN Putative uncharacterized protein                 92   2e-17

>B1DFP7.1 B1DFP7_9BACL Sporulation protein YqfC
          Length = 95

 Score =  117 bits (292), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 54/94 (57%), Positives = 71/94 (75%)

Query: 1  MTRIGRRLRGWTNGVLDLPQDVLQELPRITLIGNKELYIENHRGVLHFSSEQLRLALVNG 60
          M RI R+ R WT  +LDLPQDV+ +LPR+T+IG+++LYIENHRGVLHFSS++LRLAL  G
Sbjct: 1  MGRINRKFRKWTADILDLPQDVVYDLPRMTMIGDRQLYIENHRGVLHFSSDKLRLALSKG 60

Query: 61 SLEISGEGLVIRNILGQELAVEGIIGEIRYKGSE 94
           LE++G  LVIR I  +E+ +EG I  I  +  E
Sbjct: 61 ELEVTGTSLVIRTIWTEEVFIEGQIKSIEVRDQE 94


>B3KG31.1 B3KG31_9BACI Sporulation protein YqfC
          Length = 97

 Score =  112 bits (281), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 56/92 (60%), Positives = 70/92 (76%)

Query: 1  MTRIGRRLRGWTNGVLDLPQDVLQELPRITLIGNKELYIENHRGVLHFSSEQLRLALVNG 60
          M+RI R+L+ WT  +LDLPQD+L +LPR+TLIGNKEL+IENHRGV HFS E+L L+L  G
Sbjct: 1  MSRISRKLQKWTQEMLDLPQDLLFDLPRLTLIGNKELHIENHRGVRHFSEERLVLSLTQG 60

Query: 61 SLEISGEGLVIRNILGQELAVEGIIGEIRYKG 92
          SLEISG GL I+ I   E+ + G I  I+Y G
Sbjct: 61 SLEISGTGLAIQAIQSHEVTIIGTIHNIQYIG 92


>C0ZB78.1 C0ZB78_BREBN Putative uncharacterized protein yqfC
          Length = 98

 Score =  108 bits (270), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 54/90 (60%), Positives = 70/90 (77%)

Query: 1  MTRIGRRLRGWTNGVLDLPQDVLQELPRITLIGNKELYIENHRGVLHFSSEQLRLALVNG 60
          M R  RRLR    GVLDLPQDV+ E+PRIT+IG+ ++YIENHRGVLHFS ++LRL L NG
Sbjct: 1  MKRWSRRLRQLAGGVLDLPQDVVLEVPRITMIGHLQMYIENHRGVLHFSEKELRLLLTNG 60

Query: 61 SLEISGEGLVIRNILGQELAVEGIIGEIRY 90
           + +SGE LVIR IL +E+ +EG IG +++
Sbjct: 61 QMIVSGEQLVIRAILPEEVLLEGRIGGVKF 90


>Q5WHE6.1 Q5WHE6_BACSK Putative uncharacterized protein
          Length = 97

 Score = 93.6 bits (231), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 44/96 (45%), Positives = 65/96 (67%)

Query: 1  MTRIGRRLRGWTNGVLDLPQDVLQELPRITLIGNKELYIENHRGVLHFSSEQLRLALVNG 60
          M ++  R++ W    + LP DVL +LPRIT+IG   +YIENH+GVL FS+++LRL L  G
Sbjct: 1  MKKMTSRMKNWIAHHMQLPADVLMDLPRITMIGQLHIYIENHQGVLRFSNQELRLLLKQG 60

Query: 61 SLEISGEGLVIRNILGQELAVEGIIGEIRYKGSEEN 96
           L I G+G V++ IL +EL +EG I E+ +   ++N
Sbjct: 61 QLLIKGDGFVLKTILPEELLLEGRIDEVLFIDDKKN 96


>A7GT01.1 A7GT01_BACCN Putative uncharacterized protein
          Length = 97

 Score = 91.7 bits (226), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 42/90 (46%), Positives = 63/90 (70%)

Query: 7  RLRGWTNGVLDLPQDVLQELPRITLIGNKELYIENHRGVLHFSSEQLRLALVNGSLEISG 66
          +++ W    +DLP DVL +LPRITL+G   +YIENHRG+L FS +++RL L NG L I G
Sbjct: 6  QMKNWLTKQIDLPVDVLMDLPRITLVGQVHIYIENHRGLLVFSDKEVRLLLKNGQLLIKG 65

Query: 67 EGLVIRNILGQELAVEGIIGEIRYKGSEEN 96
          +  VI+ IL +EL +EG+I ++ +  +E+ 
Sbjct: 66 QSFVIKTILPEELLLEGVIEQVTFLENEKK 95


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.318    0.141    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 588,488,530
Number of extensions: 22369241
Number of successful extensions: 51128
Number of sequences better than 1.0e-05: 134
Number of HSP's gapped: 51132
Number of HSP's successfully gapped: 134
Length of query: 97
Length of database: 3,060,696,203
Length adjustment: 66
Effective length of query: 31
Effective length of database: 2,438,909,213
Effective search space: 75606185603
Effective search space used: 75606185603
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 125 (52.8 bits)