BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0112.0006.p (333 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KG29.1 B3KG29_9BACI YqfA 549 e-154 B1DFP9.1 B1DFP9_9BACL Band 7 protein 525 e-147 C0ZB75.1 C0ZB75_BREBN Putative uncharacterized protein yqfA 490 e-137 A6CSX2.1 A6CSX2_9BACI YqfA 485 e-135 Q65H64.1 Y2729_BACLD UPF0365 protein BLi02729/BL01411 484 e-135 >B3KG29.1 B3KG29_9BACI YqfA Length = 335 Score = 549 bits (1415), Expect = e-154, Method: Compositional matrix adjust. Identities = 275/301 (91%), Positives = 291/301 (96%) Query: 28 PVMLWVSAWAAGVRISIITLVAMRLRRVTPSRIVNPLIKATKAGLGVNINQLESHYLAGG 87 P+MLW+SA A+GVRI IITLVAMRLRRVTPSRIVNPLIKATKAGLG+NINQLESHYLAGG Sbjct: 29 PLMLWISALASGVRIGIITLVAMRLRRVTPSRIVNPLIKATKAGLGLNINQLESHYLAGG 88 Query: 88 NVDRVVNALIAAQRADIPLEFTRAAAIDLAGRDVLLAVQMSVNPRVIETPIVAAVAKNGI 147 NVDRVVNALIAAQRA+IPLEF RAAAIDLAGRDVL AVQMSVNPRVIETP+VAAVAK+GI Sbjct: 89 NVDRVVNALIAAQRANIPLEFERAAAIDLAGRDVLQAVQMSVNPRVIETPVVAAVAKDGI 148 Query: 148 EVKVKARVTVRANIDRLVGGAGEETIIARVGEGIVTTVGSSSTHKDVLENPDSISRTVLS 207 EVKVKARVTVRANIDRLVGGAGEETIIARVGEGIVTTVGSS++HKDVLENPD ISRTVLS Sbjct: 149 EVKVKARVTVRANIDRLVGGAGEETIIARVGEGIVTTVGSSNSHKDVLENPDLISRTVLS 208 Query: 208 KGLDSGTAFEILSIDIADVDVGKNIGAYLQTEQAEADKRIAQAKAEERRAMAVAHEQEMK 267 KGLD+GTAFEILSIDIADVDVGKNIGAYLQTEQAEADKRIAQAKAEERRAMAVA EQEMK Sbjct: 209 KGLDAGTAFEILSIDIADVDVGKNIGAYLQTEQAEADKRIAQAKAEERRAMAVAQEQEMK 268 Query: 268 ARVVEMKALVVESESQVPLAMAEALRSGKLGVMDYMNLKNIEADTQMRGSLGKLNDGDDS 327 ARVVEM+A VVESESQVPLAMAEALRSG+LGVMDYMNLKNIEADTQMRGS GK+ + +D+ Sbjct: 269 ARVVEMRARVVESESQVPLAMAEALRSGQLGVMDYMNLKNIEADTQMRGSFGKMGENNDN 328 Query: 328 S 328 S Sbjct: 329 S 329 >B1DFP9.1 B1DFP9_9BACL Band 7 protein Length = 327 Score = 525 bits (1351), Expect = e-147, Method: Compositional matrix adjust. Identities = 264/299 (88%), Positives = 284/299 (94%) Query: 28 PVMLWVSAWAAGVRISIITLVAMRLRRVTPSRIVNPLIKATKAGLGVNINQLESHYLAGG 87 P+MLW+SA A+GVRI IITLVAMRLRRVTPSRIVNPLIKATKAGLG+ INQLESH+LAGG Sbjct: 26 PIMLWISALASGVRIGIITLVAMRLRRVTPSRIVNPLIKATKAGLGLTINQLESHFLAGG 85 Query: 88 NVDRVVNALIAAQRADIPLEFTRAAAIDLAGRDVLLAVQMSVNPRVIETPIVAAVAKNGI 147 NVDRVVNALIAAQRA+IPL F RAAAIDLAGRDVL AVQMSVNPRVIETP VAAVAK+GI Sbjct: 86 NVDRVVNALIAAQRANIPLVFERAAAIDLAGRDVLQAVQMSVNPRVIETPTVAAVAKDGI 145 Query: 148 EVKVKARVTVRANIDRLVGGAGEETIIARVGEGIVTTVGSSSTHKDVLENPDSISRTVLS 207 EVKVKARVTVRANI+RLVGGAGEETIIARVGEGIVTTVGSS++HKDVLENPD ISRTVL Sbjct: 146 EVKVKARVTVRANIERLVGGAGEETIIARVGEGIVTTVGSSNSHKDVLENPDMISRTVLG 205 Query: 208 KGLDSGTAFEILSIDIADVDVGKNIGAYLQTEQAEADKRIAQAKAEERRAMAVAHEQEMK 267 KGLD+GTAFEILSIDIADVDVGKNIGA+LQTEQAEADKRIAQAKAEERRAMAVA EQEMK Sbjct: 206 KGLDAGTAFEILSIDIADVDVGKNIGAHLQTEQAEADKRIAQAKAEERRAMAVAQEQEMK 265 Query: 268 ARVVEMKALVVESESQVPLAMAEALRSGKLGVMDYMNLKNIEADTQMRGSLGKLNDGDD 326 ARVVEM+A VVESESQVPLAMA+AL+SGK+GVMDYMNLKNIEADTQMR ++GK + +D Sbjct: 266 ARVVEMRAKVVESESQVPLAMADALKSGKIGVMDYMNLKNIEADTQMRNTIGKPDTPND 324 >C0ZB75.1 C0ZB75_BREBN Putative uncharacterized protein yqfA Length = 334 Score = 490 bits (1262), Expect = e-137, Method: Compositional matrix adjust. Identities = 245/306 (80%), Positives = 274/306 (89%) Query: 28 PVMLWVSAWAAGVRISIITLVAMRLRRVTPSRIVNPLIKATKAGLGVNINQLESHYLAGG 87 PVMLW+SA A+GV I IITLVAMRLRRV PSRIVNPLIKA KAGL ++ NQLESHYLAGG Sbjct: 28 PVMLWISALASGVNIGIITLVAMRLRRVVPSRIVNPLIKARKAGLQLDTNQLESHYLAGG 87 Query: 88 NVDRVVNALIAAQRADIPLEFTRAAAIDLAGRDVLLAVQMSVNPRVIETPIVAAVAKNGI 147 NVDRVV+AL+AAQRADIPL F RAAAIDLAGRDVL AVQMSVNP+VIETP+VAA+AK+GI Sbjct: 88 NVDRVVDALVAAQRADIPLGFERAAAIDLAGRDVLEAVQMSVNPKVIETPVVAAMAKDGI 147 Query: 148 EVKVKARVTVRANIDRLVGGAGEETIIARVGEGIVTTVGSSSTHKDVLENPDSISRTVLS 207 E++ +A+VTVRANIDRLVGGAGEETIIARVGEGIV+T+GSS HKDVLENPD IS+TVL+ Sbjct: 148 ELRTRAKVTVRANIDRLVGGAGEETIIARVGEGIVSTIGSSKGHKDVLENPDLISKTVLN 207 Query: 208 KGLDSGTAFEILSIDIADVDVGKNIGAYLQTEQAEADKRIAQAKAEERRAMAVAHEQEMK 267 KGLD+GTAFEILSIDIADVDVGKNIGA LQT+QAEADKRIAQAKAEERRAMAVA EQEM Sbjct: 208 KGLDAGTAFEILSIDIADVDVGKNIGAQLQTDQAEADKRIAQAKAEERRAMAVAQEQEMI 267 Query: 268 ARVVEMKALVVESESQVPLAMAEALRSGKLGVMDYMNLKNIEADTQMRGSLGKLNDGDDS 327 ARV EMKA VVE+E+QVPLA++EAL+SGK+GVMDY N++NI ADTQMR S G D D Sbjct: 268 ARVQEMKAKVVEAEAQVPLALSEALKSGKMGVMDYYNMQNIAADTQMRQSFGHAGDKQDP 327 Query: 328 SRPTNK 333 + P K Sbjct: 328 ALPDEK 333 >A6CSX2.1 A6CSX2_9BACI YqfA Length = 333 Score = 485 bits (1249), Expect = e-135, Method: Compositional matrix adjust. Identities = 244/298 (81%), Positives = 270/298 (90%), Gaps = 1/298 (0%) Query: 28 PVMLWVSAWAAGVRISIITLVAMRLRRVTPSRIVNPLIKATKAGLGVNINQLESHYLAGG 87 PVMLW+SA AAGVRISI TLV MRLRRV PSRI+NPLIKA KAGL V INQLESHYLAGG Sbjct: 29 PVMLWISAIAAGVRISIFTLVGMRLRRVIPSRIINPLIKAHKAGLTVTINQLESHYLAGG 88 Query: 88 NVDRVVNALIAAQRADIPLEFTRAAAIDLAGRDVLLAVQMSVNPRVIETPIVAAVAKNGI 147 NVDRVVNALIAA RA+I L F RAAAIDLAGRDVL AVQMSVNP+VIETP +A VA +GI Sbjct: 89 NVDRVVNALIAAHRANIELTFERAAAIDLAGRDVLEAVQMSVNPKVIETPFIAGVAMDGI 148 Query: 148 EVKVKARVTVRANIDRLVGGAGEETIIARVGEGIVTTVGSSSTHKDVLENPDSISRTVLS 207 EVK KAR+TVRANIDRLVGGAGE+TI+ARVGEGIV+T+GSS+ HK VLENPD IS+TVL+ Sbjct: 149 EVKAKARITVRANIDRLVGGAGEDTIVARVGEGIVSTIGSSNNHKKVLENPDMISQTVLT 208 Query: 208 KGLDSGTAFEILSIDIADVDVGKNIGAYLQTEQAEADKRIAQAKAEERRAMAVAHEQEMK 267 KGLD+GTAFEILSIDIADVD+GKNIGA LQTEQAEADK IAQAKAEERRAMAVA+EQEM Sbjct: 209 KGLDAGTAFEILSIDIADVDIGKNIGAELQTEQAEADKNIAQAKAEERRAMAVANEQEML 268 Query: 268 ARVVEMKALVVESESQVPLAMAEALRSGKLGVMDYMNLKNIEADTQMRGSLGKLNDGD 325 A+V EM+A VVE+E++VPLAMAEALRSG +GVMDYMN KNI+ADT+MRGS+GKL GD Sbjct: 269 AKVQEMRAKVVEAEAEVPLAMAEALRSGNIGVMDYMNYKNIDADTEMRGSIGKLT-GD 325 >Q65H64.1 Y2729_BACLD UPF0365 protein BLi02729/BL01411 Length = 330 Score = 484 bits (1247), Expect = e-135, Method: Compositional matrix adjust. Identities = 240/294 (81%), Positives = 266/294 (90%) Query: 28 PVMLWVSAWAAGVRISIITLVAMRLRRVTPSRIVNPLIKATKAGLGVNINQLESHYLAGG 87 PVMLW+SA AAGV+ISI TL+ MRLRRV P+R+VNPLIKA KAGL V INQLESHYLAGG Sbjct: 27 PVMLWISALAAGVKISIFTLIGMRLRRVIPNRVVNPLIKAHKAGLDVAINQLESHYLAGG 86 Query: 88 NVDRVVNALIAAQRADIPLEFTRAAAIDLAGRDVLLAVQMSVNPRVIETPIVAAVAKNGI 147 NVDRVVNALIAAQRA+I L F R AAIDLAGRDVL AVQMSVNP+VIETP +A VA +GI Sbjct: 87 NVDRVVNALIAAQRANIELTFARCAAIDLAGRDVLEAVQMSVNPKVIETPFIAGVAMDGI 146 Query: 148 EVKVKARVTVRANIDRLVGGAGEETIIARVGEGIVTTVGSSSTHKDVLENPDSISRTVLS 207 EVK KAR+TVRANIDRLVGGAGEETIIARVGEGIV+T+GSS HK VLENPD IS+TVLS Sbjct: 147 EVKAKARITVRANIDRLVGGAGEETIIARVGEGIVSTIGSSDNHKKVLENPDMISQTVLS 206 Query: 208 KGLDSGTAFEILSIDIADVDVGKNIGAYLQTEQAEADKRIAQAKAEERRAMAVAHEQEMK 267 KGLDSGTAFEILSIDIADVD+GKNIGA LQT+QAEADK IAQAKAEERRAMAVA EQEM+ Sbjct: 207 KGLDSGTAFEILSIDIADVDIGKNIGAILQTDQAEADKNIAQAKAEERRAMAVAQEQEMR 266 Query: 268 ARVVEMKALVVESESQVPLAMAEALRSGKLGVMDYMNLKNIEADTQMRGSLGKL 321 ARV EM+A VVE+E++VPLAM+EALRSGK+GVMDY+N+KNI+ADT MR S GK+ Sbjct: 267 ARVEEMRAKVVEAEAEVPLAMSEALRSGKIGVMDYLNMKNIDADTDMRDSFGKM 320 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.315 0.130 0.348 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,572,444,451 Number of extensions: 58575506 Number of successful extensions: 230218 Number of sequences better than 1.0e-05: 145 Number of HSP's gapped: 229950 Number of HSP's successfully gapped: 145 Length of query: 333 Length of database: 3,060,696,203 Length adjustment: 136 Effective length of query: 197 Effective length of database: 1,779,438,163 Effective search space: 350549318111 Effective search space used: 350549318111 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 131 (55.1 bits)