BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0112.0005.p (455 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KG28.1 B3KG28_9BACI Putative uncharacterized protein 463 e-128 B1DFQ0.1 B1DFQ0_9BACL Putative uncharacterized protein 382 e-104 Q9KD63.1 Q9KD63_BACHD BH1356 protein 301 1e-79 C0ZB74.1 C0ZB74_BREBN Conserved hypothetical membrane protein 291 7e-77 A6CSX1.1 A6CSX1_9BACI Putative uncharacterized protein 284 2e-74 >B3KG28.1 B3KG28_9BACI Putative uncharacterized protein Length = 453 Score = 463 bits (1191), Expect = e-128, Method: Compositional matrix adjust. Identities = 234/422 (55%), Positives = 296/422 (70%) Query: 31 APGTGPAEPKSGPVFIIPVDQEIERGLQSFLARGFQEAANYGAVLILLEIDTPGGLVSSA 90 AP G V++IPV Q IERGL SF+ RGF+EA A LI+LEIDTPGGLV A Sbjct: 29 APMKSAMAANIGSVYVIPVKQPIERGLTSFMERGFKEAKEMAAGLIVLEIDTPGGLVDQA 88 Query: 91 EQIGMMVRDSTIPTAAFINGDAASAGSYIALNAGSIIMKPGSMIGAASLVDGKGGSVDDA 150 +I +++ S IP A+I GDAASAGSYIALNA I M GSMIGAA +VD +G ++DA Sbjct: 89 GEIATLMKGSEIPIVAYITGDAASAGSYIALNADKIAMSEGSMIGAAYMVDARGNRIEDA 148 Query: 151 KLVSYWKAKMVGAAELNGRDPEIAAGMMDKNIVVNKPELGVNKAHGQIIALSSDEALKAG 210 KLVS+WK+KM GAAE GR+ EIA GM D N+ V+ PE+G+ K G+ ++L+ DEALK G Sbjct: 149 KLVSWWKSKMAGAAEAGGRNKEIAMGMADINLKVDMPEIGLTKQPGEGLSLTHDEALKTG 208 Query: 211 YADSIASTPEEAITSLGYSTDDIFRVEHTGAEKMSHFLTNPIVMTILLFVGIAGIVIEML 270 YAD+IA++ EE IT + YST D+FR+E T +EK++ FLT+P VMT+LLF+GIAG++IE++ Sbjct: 209 YADTIANSTEEVITWMDYSTQDVFRMEPTFSEKLATFLTHPGVMTLLLFIGIAGVIIEVI 268 Query: 271 VPGFGVPGIIGTLAFALYFFGNYVAGFAGSETWXXXXXXXXXXXXXXXXPSFGILGLLGS 330 VPGFGVPGI+G +AF LYFFGN VAGFAG ETW PSFGILG++GS Sbjct: 269 VPGFGVPGILGVVAFVLYFFGNQVAGFAGWETWLLFVIGIVMLAMELFVPSFGILGIIGS 328 Query: 331 VFLVAGVVRAAYNYTHALFSLGXXXXXXXXXXXXXXXTFKERGIWNRFILQDSLTKEQGF 390 L+AGVV AAY+ +H SLG FKERG+W +FIL DSL+KEQG+ Sbjct: 329 ASLIAGVVMAAYSTSHVALSLGVAAASALVAIIVVALVFKERGVWRKFILSDSLSKEQGY 388 Query: 391 VPVLEKLSLVGASGISITPLRPAGTASLNGERVDVVTEGSFIAAGASISVIKVEGGRVVV 450 +P ++ L+G G SITPLRPAGT L G R+DVVT G FI +G + VIK +G R+VV Sbjct: 389 IPNEDRDVLIGLVGTSITPLRPAGTMELEGRRLDVVTLGGFIDSGRPVRVIKTDGTRIVV 448 Query: 451 KE 452 +E Sbjct: 449 EE 450 >B1DFQ0.1 B1DFQ0_9BACL Putative uncharacterized protein Length = 458 Score = 382 bits (982), Expect = e-104, Method: Compositional matrix adjust. Identities = 205/420 (48%), Positives = 279/420 (66%), Gaps = 6/420 (1%) Query: 33 GTGPAEPKSGPVFIIPVDQEIERGLQSFLARGFQEAANYGAVLILLEIDTPGGLVSSAEQ 92 G GPA V+++PV Q +E GL+SFL R ++EAA A ++L I+T GG V+SAE+ Sbjct: 43 GLGPA------VYVVPVKQTVESGLKSFLERAYKEAAEAKAERVILVINTFGGEVTSAEE 96 Query: 93 IGMMVRDSTIPTAAFINGDAASAGSYIALNAGSIIMKPGSMIGAASLVDGKGGSVDDAKL 152 IG ++R S++PT A++ G A SAG+YIALNA +I+M+PGS IGAA++V+G G +D+ K+ Sbjct: 97 IGELIRKSSVPTTAYVEGKAVSAGTYIALNAQNIVMEPGSTIGAAAVVNGSGDLIDNPKV 156 Query: 153 VSYWKAKMVGAAELNGRDPEIAAGMMDKNIVVNKPELGVNKAHGQIIALSSDEALKAGYA 212 VS+W M AAELNGR+P+IAA M+D + P+L K GQI+ L++DEALK GYA Sbjct: 157 VSFWVKTMREAAELNGRNPDIAAAMVDTGATLPLPDLKQVKQSGQILTLTADEALKVGYA 216 Query: 213 DSIASTPEEAITSLGYSTDDIFRVEHTGAEKMSHFLTNPIVMTILLFVGIAGIVIEMLVP 272 + A + E+AI LG + + + AEK++ +L NP+VMT+L +GIAGI IE+ VP Sbjct: 217 EYKAESVEDAIKWLGLENREQIDLNPSIAEKIASWLVNPVVMTVLFILGIAGIAIELFVP 276 Query: 273 GFGVPGIIGTLAFALYFFGNYVAGFAGSETWXXXXXXXXXXXXXXXXPSFGILGLLGSVF 332 GFGVPGI+G L+F LYFFG+Y+AGFAG E+ PS+GILG+LGS Sbjct: 277 GFGVPGIVGILSFGLYFFGHYIAGFAGMESVVLFIVGVALLLVEVFVPSWGILGILGSAS 336 Query: 333 LVAGVVRAAYNYTHALFSLGXXXXXXXXXXXXXXXTFKERGIWNRFILQDSLTKEQGFVP 392 L+AGV+ AA N A SL +K+RGIWN+FIL++ LT EQG++ Sbjct: 337 LIAGVLTAASNPMTAFVSLVIALVAAAVILYFVVRKYKDRGIWNKFILREKLTTEQGYLS 396 Query: 393 VLEKLSLVGASGISITPLRPAGTASLNGERVDVVTEGSFIAAGASISVIKVEGGRVVVKE 452 K L+G GI+ITPLRPAGT + R+DVVT G FIA+G ++ VIK EG VVV+E Sbjct: 397 AETKEDLLGQEGIAITPLRPAGTIQIRDNRIDVVTSGEFIASGKTVKVIKTEGTWVVVRE 456 >Q9KD63.1 Q9KD63_BACHD BH1356 protein Length = 445 Score = 301 bits (771), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 166/414 (40%), Positives = 249/414 (60%), Gaps = 9/414 (2%) Query: 44 VFIIPVDQEIERGLQSFLARGFQEAANYGAVLILLEIDTPGGLVSSAEQIGMMVRDSTIP 103 V+ IPV+QE+ERGL++FL R A GA I+LEI+TPGG V +A + +R++ IP Sbjct: 39 VYYIPVEQEVERGLEAFLQRSLDSAVEEGADHIVLEINTPGGRVDAAGNMARALRETDIP 98 Query: 104 TAAFINGDAASAGSYIALNAGSIIMKPGSMIGAASLVDGKGGSVDDAKLVSYWKAKMVGA 163 A++ A SAG+YIALNA I+M PGS +G+A+++D G + D+ K SYW A+M A Sbjct: 99 ITAYVIDQALSAGAYIALNADEIVMAPGSTMGSAAVIDSAGNAADE-KAQSYWLAEMRNA 157 Query: 164 AELNGRDPEIAAGMMDKNIVVNKPELGVNKAHGQIIALSSDEALKAGYADSIASTPEEAI 223 AE N RDP+ A M D++I + PEL ++ + +++ L++ +AL+ YA++IAS E + Sbjct: 158 AEYNDRDPKYALAMADRSIEI--PELDIS--NEELLTLTASQALEVNYAEAIASNRAELL 213 Query: 224 TSLGYSTDDIF--RVEHTGAEKMSHFLTNPIVMTILLFVGIAGIVIEMLVPGFGVPGIIG 281 L D+ F +E + AEK++ F+TNP+++ ILL +G G+V+E+ PGFGVPGI+G Sbjct: 214 EHL--QIDNAFEQEMEVSFAEKLARFVTNPLIIPILLSIGSLGLVLELYSPGFGVPGIMG 271 Query: 282 TLAFALYFFGNYVAGFAGSETWXXXXXXXXXXXXXXXXPSFGILGLLGSVFLVAGVVRAA 341 A L+FFG+ +AGFAG E P FG+ G+LG ++ G++ A+ Sbjct: 272 ISALLLFFFGHLIAGFAGYEAMILFIAGFLLILIEVFMPGFGLFGILGIAGMIGGMLLAS 331 Query: 342 YNYTHALFSLGXXXXXXXXXXXXXXXTFKERGIWNRFILQDSLTKEQGFVPVLEKLSLVG 401 ++ L SLG F RG W + IL +S + E+G++ + LVG Sbjct: 332 FSTAWMLVSLGISAVVTTVVAIITFRYFGSRGPWKKMILTESTSSEKGYITNETRQELVG 391 Query: 402 ASGISITPLRPAGTASLNGERVDVVTEGSFIAAGASISVIKVEGGRVVVKEAAE 455 G S+TPLRP+G+ ER+DVV+EG +I G I V+ G R+VV+E E Sbjct: 392 LIGQSLTPLRPSGSGLFGEERLDVVSEGGYIEQGRKIKVVSTSGSRIVVRETDE 445 >C0ZB74.1 C0ZB74_BREBN Conserved hypothetical membrane protein Length = 447 Score = 291 bits (746), Expect = 7e-77, Method: Compositional matrix adjust. Identities = 177/422 (41%), Positives = 257/422 (60%), Gaps = 8/422 (1%) Query: 31 APGTGPAEPKSGPVFIIPVDQEIERGLQSFLARGFQEAANYGAVLILLEIDTPGGLVSSA 90 AP + A+ V+I PVD IERGL+SFL R F +A A L++L I+TPGG V++A Sbjct: 29 APASTTAKTYQKAVWI-PVDSTIERGLESFLHRAFADAQQQQADLVILHINTPGGEVNAA 87 Query: 91 EQIGMMVRDSTIPTAAFINGDAASAGSYIALNAGSIIMKPGSMIGAASLVDGKGGSVDDA 150 +QIG ++R + + A+I+ A SAG+YIALNA IIM PGS +GAA+ +D G+ D Sbjct: 88 DQIGQLIRQAPMHVIAYIDNQAFSAGTYIALNANEIIMTPGSSMGAATPID-LAGNAADI 146 Query: 151 KLVSYWKAKMVGAAELNGRDPEIAAGMMDKNIVVNKPELGVNKAHGQIIALSSDEALKAG 210 K +S W KM AAELN R+P++A M++ I P L K G +++L + +A + G Sbjct: 147 KFISGWSNKMKAAAELNNRNPDVARAMVE--IDTEFPGL---KPKGTVLSLDAQQAKRLG 201 Query: 211 YADSIASTPEEAITSLGYSTDDIFRVEHTGAEKMSHFLTNPIVMTILLFVGIAGIVIEML 270 YAD + S EE + LG D + +E TG E ++ ++T+PIVM++LL +G+ GIV+E+ Sbjct: 202 YADDVVSNKEELLKKLGIQPDSLQAIEPTGGELVARWVTSPIVMSLLLIIGLGGIVVELF 261 Query: 271 VPGFGVPGIIGTLAFALYFFGNYVAGFAGSETWXXXXXXXXXXXXXXXXPSFGILGLLGS 330 PGFGV G I AF+LYFFG+YVAGFA P GI+G +G Sbjct: 262 APGFGVAGTISLFAFSLYFFGHYVAGFANWLHIGLFVVGILLMLLEIFLPG-GIVGAIGF 320 Query: 331 VFLVAGVVRAAYNYTHALFSLGXXXXXXXXXXXXXXXTFKERGIWNRFILQDSLTKEQGF 390 + +V G+V AAY+ L SLG + +G++N+F+L ++ + E+G+ Sbjct: 321 LSIVTGLVMAAYDTKQGLASLGVAALVTVIVAFMLVKKYGVKGLFNKFVLGETQSSEEGY 380 Query: 391 VPVLEKLSLVGASGISITPLRPAGTASLNGERVDVVTEGSFIAAGASISVIKVEGGRVVV 450 V ++ L G SGI++TPLRPAG + G+RVD V+ G FI AG +I+V++VEG R+VV Sbjct: 381 VAPRDQRELEGKSGIALTPLRPAGVVKVEGKRVDAVSVGGFIEAGTAITVVQVEGTRIVV 440 Query: 451 KE 452 E Sbjct: 441 AE 442 >A6CSX1.1 A6CSX1_9BACI Putative uncharacterized protein Length = 448 Score = 284 bits (726), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 162/410 (39%), Positives = 242/410 (59%), Gaps = 7/410 (1%) Query: 44 VFIIPVDQEIERGLQSFLARGFQEAANYGAVLILLEIDTPGGLVSSAEQIGMMVRDSTIP 103 V++IP+++E+E+GL +FL+RG +A GA I+ IDTPGGLV +A IG ++ ++ I Sbjct: 43 VYVIPIEKEVEKGLYAFLSRGINDAREAGADTIIFHIDTPGGLVDAAGNIGKLLDNTEIK 102 Query: 104 TAAFINGDAASAGSYIALNAGSIIMKPGSMIGAASLVDGKGGSVDDAKLVSYWKAKMVGA 163 T AF++ A SAG++I+L+A I M P + +GAA+++D G S D+ K SYW A M A Sbjct: 103 TVAFVDNRALSAGAFISLHADEIYMVPNATMGAAAIIDQAGNSADE-KAQSYWLAAMKSA 161 Query: 164 AELNGRDPEIAAGMMDKNIVVNKPELGVNKAHGQIIALSSDEALKAGYADSIASTPEEAI 223 AE + RDP+ A M DK+ V+ PE+G A G+++ L + A GY++ S EE + Sbjct: 162 AETSDRDPKYALAMADKS--VDLPEVG--AAKGELLTLDAKTAESVGYSEGTVSNMEELL 217 Query: 224 TSLGYSTDDIFRVEHTGAEKMSHFLTNPIVMTILLFVGIAGIVIEMLVPGFGVPGIIGTL 283 LG ++ VE + AE ++ F+TNP+V+ ILL + G+V+E+ PGFGV G IG Sbjct: 218 QKLGMENAEVVNVEESFAETLARFITNPVVVPILLSLASLGLVVELYSPGFGVAGSIGLA 277 Query: 284 AFALYFFGNYVAGFAGSETWXXXXXXXXXXXXXXXXPSFGILGLLGSVFLVAGVVRAAYN 343 + L+F+G+ VAG AG ET P GI G+LG ++ ++ A N Sbjct: 278 SLLLFFYGHLVAGLAGYETLILFIVGIGLIVAEFFLPG-GIAGVLGIGAIIGSILMAGGN 336 Query: 344 YTHALFSLGXXXXXXXXXXXXXXXTF-KERGIWNRFILQDSLTKEQGFVPVLEKLSLVGA 402 SL F K+ +N+ IL+DS E G+V + +L L+GA Sbjct: 337 VVTMGISLLIALLVAIIAMVVFVKVFGKKMNFFNKIILKDSTNTESGYVSNVNRLELIGA 396 Query: 403 SGISITPLRPAGTASLNGERVDVVTEGSFIAAGASISVIKVEGGRVVVKE 452 +G++ TPLRP+GT ++ ER+D VTEGSFIA + V+KVEG + VV+E Sbjct: 397 TGVTKTPLRPSGTIIIDDERIDAVTEGSFIAQDKPVRVVKVEGSKTVVRE 446 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.317 0.136 0.386 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,471,806,004 Number of extensions: 99817614 Number of successful extensions: 312247 Number of sequences better than 1.0e-05: 323 Number of HSP's gapped: 311527 Number of HSP's successfully gapped: 331 Length of query: 455 Length of database: 3,060,696,203 Length adjustment: 139 Effective length of query: 316 Effective length of database: 1,751,175,118 Effective search space: 553371337288 Effective search space used: 553371337288 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 133 (55.8 bits)