BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0112.0004.p
         (99 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KG27.1 B3KG27_9BACI Putative uncharacterized protein                169   5e-41
B1DFQ1.1 B1DFQ1_9BACL Putative uncharacterized protein                150   3e-35
C5D4T3.1 C5D4T3_9BACI Putative uncharacterized protein                127   2e-28
A3DF50.1 A3DF50_CLOTH GatB/YqeY                                       127   3e-28
Q5KX05.1 Q5KX05_GEOKA Hypothetical conserved protein                  127   3e-28

>B3KG27.1 B3KG27_9BACI Putative uncharacterized protein
          Length = 146

 Score =  169 bits (429), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 84/98 (85%), Positives = 90/98 (91%)

Query: 1   VLDILSREIKQRKDALQEFESAGRDELAASTKAEIEIIMKYLPDQLSEEEIKVIVQQTIQ 60
           VLDI SREIKQRKDALQEFE AGRD+LAA  KAEIE++  YLP+QL+EEEIKVIVQQTIQ
Sbjct: 49  VLDIFSREIKQRKDALQEFEKAGRDDLAADAKAEIELLSAYLPEQLTEEEIKVIVQQTIQ 108

Query: 61  ETGASSKSEMGKVMSALMPKVKGRADGKLVNQAVLQFL 98
           ETGASSK+EMGKVMSALMPKVKGRADGKLVNQ V QFL
Sbjct: 109 ETGASSKAEMGKVMSALMPKVKGRADGKLVNQVVQQFL 146


>B1DFQ1.1 B1DFQ1_9BACL Putative uncharacterized protein
          Length = 147

 Score =  150 bits (380), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 76/99 (76%), Positives = 83/99 (83%)

Query: 1   VLDILSREIKQRKDALQEFESAGRDELAASTKAEIEIIMKYLPDQLSEEEIKVIVQQTIQ 60
           V+DILSREIKQRKD+LQEF  AGRD+L     AEIEII +YLP QL+EEEIK IV QTIQ
Sbjct: 49  VVDILSREIKQRKDSLQEFSKAGRDDLVTDLSAEIEIISQYLPVQLTEEEIKAIVTQTIQ 108

Query: 61  ETGASSKSEMGKVMSALMPKVKGRADGKLVNQAVLQFLQ 99
           E GASSK+EMGKVM AL+PK KGRADGKLVNQ V QFLQ
Sbjct: 109 ELGASSKAEMGKVMGALLPKTKGRADGKLVNQYVQQFLQ 147


>C5D4T3.1 C5D4T3_9BACI Putative uncharacterized protein
          Length = 149

 Score =  127 bits (320), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 64/97 (65%), Positives = 79/97 (81%)

Query: 2   LDILSREIKQRKDALQEFESAGRDELAASTKAEIEIIMKYLPDQLSEEEIKVIVQQTIQE 61
           L +LSRE+KQRKD+LQEFE+AGR +L   TKAEIEI+  Y+P  L+EEE+  IV+QTI E
Sbjct: 51  LTVLSRELKQRKDSLQEFENAGRADLVEKTKAEIEIVQLYMPKPLTEEELLEIVKQTIAE 110

Query: 62  TGASSKSEMGKVMSALMPKVKGRADGKLVNQAVLQFL 98
            GASSK++MGKVM A+MPKVKG+ADG LVN+ V Q L
Sbjct: 111 VGASSKADMGKVMGAIMPKVKGKADGSLVNRLVQQQL 147


>A3DF50.1 A3DF50_CLOTH GatB/YqeY
          Length = 147

 Score =  127 bits (319), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 56/98 (57%), Positives = 84/98 (85%)

Query: 1   VLDILSREIKQRKDALQEFESAGRDELAASTKAEIEIIMKYLPDQLSEEEIKVIVQQTIQ 60
           +L+++++E+K+RKD+L E+E +GR +L  + K EI+++MKYLP+QL+E+EI+ IV++TI 
Sbjct: 49  ILEVIAKEVKKRKDSLTEYEKSGRQDLIDALKTEIDVLMKYLPEQLTEDEIEAIVKETIN 108

Query: 61  ETGASSKSEMGKVMSALMPKVKGRADGKLVNQAVLQFL 98
           ETGASS  ++GKVM A++PKVKGRADGKLVNQ V ++L
Sbjct: 109 ETGASSAGDIGKVMKAVLPKVKGRADGKLVNQIVRKYL 146


>Q5KX05.1 Q5KX05_GEOKA Hypothetical conserved protein
          Length = 148

 Score =  127 bits (319), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 60/97 (61%), Positives = 79/97 (81%)

Query: 2   LDILSREIKQRKDALQEFESAGRDELAASTKAEIEIIMKYLPDQLSEEEIKVIVQQTIQE 61
           L +LSRE+KQRKD+LQEFE+AGR +L    K EIEI+  Y+P  L+E+E++ +++QTI+E
Sbjct: 51  LTVLSRELKQRKDSLQEFENAGRSDLVEKVKTEIEIVQSYMPTPLTEDELRELIEQTIKE 110

Query: 62  TGASSKSEMGKVMSALMPKVKGRADGKLVNQAVLQFL 98
            GASSK++MGKVM A+MPKVKGRADG LVN+ V Q L
Sbjct: 111 VGASSKADMGKVMGAIMPKVKGRADGSLVNKLVQQQL 147


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.311    0.128    0.318 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 431,620,170
Number of extensions: 12626467
Number of successful extensions: 51533
Number of sequences better than 1.0e-05: 888
Number of HSP's gapped: 51443
Number of HSP's successfully gapped: 888
Length of query: 99
Length of database: 3,060,696,203
Length adjustment: 68
Effective length of query: 31
Effective length of database: 2,420,067,183
Effective search space: 75022082673
Effective search space used: 75022082673
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 125 (52.8 bits)