BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0112.0003.p
         (119 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B1DFQ3.1 B1DFQ3_9BACL Histidine triad (HIT) protein                   127   3e-28
B3KG25.1 B3KG25_9BACI Histidine triad (HIT) protein                   124   2e-27
A5N6M7.1 A5N6M7_CLOK5 Predicted HIT family protein                    123   6e-27
B9E046.1 B9E046_CLOK1 Putative uncharacterized protein                123   7e-27
B8I407.1 B8I407_CLOCE Histidine triad (HIT) protein                   120   3e-26

>B1DFQ3.1 B1DFQ3_9BACL Histidine triad (HIT) protein
          Length = 117

 Score =  127 bits (319), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 61/95 (64%), Positives = 75/95 (78%)

Query: 1  METVFSKIIEGSIPSKKVFENERILAFYDIEPAAPVHVLIIPKKFIASMNDVAPEDLPLI 60
          M+ +F KIIEGSIPS KV+E+E ++AF DI+PAAPVH+LIIPKK I +MNDV  ED P+I
Sbjct: 1  MDCIFCKIIEGSIPSTKVYESENVIAFKDIQPAAPVHILIIPKKHIPTMNDVTEEDGPVI 60

Query: 61 GEIHAVAQQIAVELGIADSGYRLINNCGPDSGQAV 95
           E+ A A++IA + GIADSGYRLINN   D GQ V
Sbjct: 61 AELFATAREIAKQQGIADSGYRLINNVNSDGGQVV 95


>B3KG25.1 B3KG25_9BACI Histidine triad (HIT) protein
          Length = 119

 Score =  124 bits (312), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 60/95 (63%), Positives = 74/95 (77%)

Query: 1  METVFSKIIEGSIPSKKVFENERILAFYDIEPAAPVHVLIIPKKFIASMNDVAPEDLPLI 60
          M+ VF KI+EG +PS K+ EN+++L F +I P APVHVLIIPKK IASMND+  EDL LI
Sbjct: 1  MDCVFCKIVEGELPSTKILENDKVLVFQNINPEAPVHVLIIPKKHIASMNDIGDEDLLLI 60

Query: 61 GEIHAVAQQIAVELGIADSGYRLINNCGPDSGQAV 95
          GE+H  A++ A +LGIA+SGYRLINNCG D  Q V
Sbjct: 61 GEMHKAAKEAAAKLGIAESGYRLINNCGRDGEQTV 95


>A5N6M7.1 A5N6M7_CLOK5 Predicted HIT family protein
          Length = 114

 Score =  123 bits (308), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 55/94 (58%), Positives = 74/94 (78%)

Query: 2  ETVFSKIIEGSIPSKKVFENERILAFYDIEPAAPVHVLIIPKKFIASMNDVAPEDLPLIG 61
          + +F KII+G IPS+KV+E++++L F DIEP APVHVLIIPKK I S+ND+  ED  LI 
Sbjct: 3  DCIFCKIIKGEIPSEKVYEDDKVLCFKDIEPGAPVHVLIIPKKHIDSINDITEEDTKLIA 62

Query: 62 EIHAVAQQIAVELGIADSGYRLINNCGPDSGQAV 95
           I+ +A+QIAV+LGIA+ GYR++ NCG + GQ V
Sbjct: 63 YIYLIAKQIAVKLGIANKGYRIVTNCGKEGGQTV 96


>B9E046.1 B9E046_CLOK1 Putative uncharacterized protein
          Length = 117

 Score =  123 bits (308), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 55/94 (58%), Positives = 74/94 (78%)

Query: 2  ETVFSKIIEGSIPSKKVFENERILAFYDIEPAAPVHVLIIPKKFIASMNDVAPEDLPLIG 61
          + +F KII+G IPS+KV+E++++L F DIEP APVHVLIIPKK I S+ND+  ED  LI 
Sbjct: 6  DCIFCKIIKGEIPSEKVYEDDKVLCFKDIEPGAPVHVLIIPKKHIDSINDITEEDTKLIA 65

Query: 62 EIHAVAQQIAVELGIADSGYRLINNCGPDSGQAV 95
           I+ +A+QIAV+LGIA+ GYR++ NCG + GQ V
Sbjct: 66 YIYLIAKQIAVKLGIANKGYRIVTNCGKEGGQTV 99


>B8I407.1 B8I407_CLOCE Histidine triad (HIT) protein
          Length = 114

 Score =  120 bits (302), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 53/94 (56%), Positives = 75/94 (79%)

Query: 2  ETVFSKIIEGSIPSKKVFENERILAFYDIEPAAPVHVLIIPKKFIASMNDVAPEDLPLIG 61
          + +F KII G IPSKKV+E +++ AF+DI P APVHVLI+PK+ IAS N+++ E++ ++ 
Sbjct: 3  DCIFCKIINGEIPSKKVYETDKVYAFHDINPEAPVHVLIVPKEHIASHNELSSENVDVMK 62

Query: 62 EIHAVAQQIAVELGIADSGYRLINNCGPDSGQAV 95
          +IH  A +IA +LGI++SGYRLINNCG D+GQ V
Sbjct: 63 DIHLAANEIARKLGISESGYRLINNCGADAGQTV 96


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.317    0.136    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 610,333,391
Number of extensions: 22418200
Number of successful extensions: 52294
Number of sequences better than 1.0e-05: 1469
Number of HSP's gapped: 51813
Number of HSP's successfully gapped: 1469
Length of query: 119
Length of database: 3,060,696,203
Length adjustment: 85
Effective length of query: 34
Effective length of database: 2,259,909,928
Effective search space: 76836937552
Effective search space used: 76836937552
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 126 (53.1 bits)