BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0111.0001.p (282 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1D799.1 B1D799_9BACL Glycosyl transferase family 2 249 1e-64 B3KA00.1 B3KA00_9BACI Glycosyl transferase family 2 225 3e-57 C3FY04.1 C3FY04_BACTU Glycosyl transferase, group 2 182 4e-44 Q6HNU7.1 Q6HNU7_BACHK Glycosyltransferase, involved in cell wall... 182 4e-44 Q63GD3.1 Q63GD3_BACCZ Glycosyltransferase, involved in cell wall... 180 1e-43 >B1D799.1 B1D799_9BACL Glycosyl transferase family 2 Length = 250 Score = 249 bits (637), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 138/238 (57%), Positives = 157/238 (65%), Gaps = 1/238 (0%) Query: 44 VSVIIPAMNEAGTIAKVIAGARGVHPRCEVIVVVNGSLDNTADIALSQGARVILFEQPLG 103 VSVIIP MNE TI +VI A VHPR EVIVV NGS D + IA GARV+ FE+PLG Sbjct: 11 VSVIIPVMNEKSTIGRVIREAAKVHPRTEVIVVANGSTDGSIAIARKMGARVLQFEKPLG 70 Query: 104 HDVGRSIGAEAAKGEVLLFTDGDLVIPASQLRPFVAAV-SHGTDVALNDYSGPVRSKFPH 162 HDVGR+IGA AKGEVLLF DGD+VI A+ LRPFV AV G D ALN+YSGPVR H Sbjct: 71 HDVGRTIGALEAKGEVLLFIDGDMVISAANLRPFVHAVREKGVDAALNNYSGPVRKAKVH 130 Query: 163 PVVLSKHALNIMLGRSDLKGCSLTAVPHXXXXXXXXXXXXXXXXXPPLAHAQAVLDGLLV 222 VVL+KHALN +L R DLKG S TAVPH PPLAHA AV GL V Sbjct: 131 SVVLAKHALNAVLQRPDLKGMSFTAVPHAISRRCLDTIGAESLSVPPLAHAMAVKQGLKV 190 Query: 223 KAVHKVPVGRLNAVRPKQAGADPLREVILTDHLDAAGMVLQRRGERAGFNDGNRRREM 280 KAVH V VG++N RP++ +PL +IL DHL+A +L ER GF D R+REM Sbjct: 191 KAVHTVNVGKINKPRPERERKNPLERLILGDHLEAIYWLLSCTDERGGFEDRLRKREM 248 >B3KA00.1 B3KA00_9BACI Glycosyl transferase family 2 Length = 279 Score = 225 bits (574), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 123/238 (51%), Positives = 147/238 (61%) Query: 44 VSVIIPAMNEAGTIAKVIAGARGVHPRCEVIVVVNGSLDNTADIALSQGARVILFEQPLG 103 VSVIIPAMNEA TIA VI A VH EVIVV NGS D TADIA S GARVI PLG Sbjct: 41 VSVIIPAMNEAKTIAAVIRQASQVHSATEVIVVANGSTDGTADIAQSIGARVIHLPFPLG 100 Query: 104 HDVGRSIGAEAAKGEVLLFTDGDLVIPASQLRPFVAAVSHGTDVALNDYSGPVRSKFPHP 163 HDVGRSIGA AA+G++LLFTD D+VI S L P AV G DVALN Y GP+ H Sbjct: 101 HDVGRSIGAAAARGDILLFTDADIVIKTSDLTPLTKAVEEGVDVALNKYLGPIDKHHVHS 160 Query: 164 VVLSKHALNIMLGRSDLKGCSLTAVPHXXXXXXXXXXXXXXXXXPPLAHAQAVLDGLLVK 223 V+L+KH LNI++ DLKG SLT +PH PP A A A+ +GL V+ Sbjct: 161 VILAKHTLNILVSNPDLKGASLTTIPHAMSRKAVYLIGIDNLAVPPKAQAMAIYNGLKVR 220 Query: 224 AVHKVPVGRLNAVRPKQAGADPLREVILTDHLDAAGMVLQRRGERAGFNDGNRRREMV 281 +H V VG+ N R + G DPL +I+ DHL+A ++ + G R +D R+RE V Sbjct: 221 GIHYVDVGKRNPRRGRTRGNDPLETLIVGDHLEAIDWLISKSGMRGNRSDLARKRESV 278 >C3FY04.1 C3FY04_BACTU Glycosyl transferase, group 2 Length = 402 Score = 182 bits (461), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 104/243 (42%), Positives = 143/243 (58%), Gaps = 6/243 (2%) Query: 44 VSVIIPAMNEAGTIAKVIAGARGVHPRCEVIVVVNGSLDNTADIALSQGARVILFEQPLG 103 +SVIIP NE TI VI R + P E+IVVVNGS D TA IA +GA I++++ LG Sbjct: 161 LSVIIPVQNEEKTIGNVIEEVRKIEP-FEIIVVVNGSSDQTATIAKDKGATTIVYKEALG 219 Query: 104 HDVGRSIGAEAAKGEVLLFTDGDLVIPASQLRPFVAAVSHGTDVALNDYSGPVRSKFP-H 162 +DVGRS+G AKGE++LF DGD VIPAS+L PF A++ GTDVALND + + + P H Sbjct: 220 NDVGRSLGTYFAKGEIVLFIDGDFVIPASELYPFAKAIADGTDVALNDLNHYLDLRVPLH 279 Query: 163 PVVLSKHALNIMLGRSDLKGCSLTAVPHXXXXXXXXXXXXXXXXXPPLAHAQAVLDGLLV 222 V K+ALN+ R DL SL AVP+ P +A +A+L G V Sbjct: 280 LVTAFKYALNLACDRKDLGVGSLVAVPNAFSRKCLKQIGYRSLLAPCVAQVKAILSGFEV 339 Query: 223 KAVHKVPVGRLNAVRPKQ----AGADPLREVILTDHLDAAGMVLQRRGERAGFNDGNRRR 278 V +V V ++N +RP + G P I+ DH++ ++ G R GF+DGNR+R Sbjct: 340 ACVSRVEVDKMNRIRPSEHFAKIGHPPAVLRIIGDHIEGLEQLIGLTGSRGGFHDGNRKR 399 Query: 279 EMV 281 +++ Sbjct: 400 DIL 402 >Q6HNU7.1 Q6HNU7_BACHK Glycosyltransferase, involved in cell wall biogenesis EC=2.4.-.- Length = 518 Score = 182 bits (461), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 104/243 (42%), Positives = 143/243 (58%), Gaps = 6/243 (2%) Query: 44 VSVIIPAMNEAGTIAKVIAGARGVHPRCEVIVVVNGSLDNTADIALSQGARVILFEQPLG 103 +SVIIP NE TI VI R + P E+IVVVNGS D TA IA +GA I++++ LG Sbjct: 277 LSVIIPVQNEEKTIGNVIEEVRKIEP-FEIIVVVNGSSDQTATIAKDKGATTIVYKEALG 335 Query: 104 HDVGRSIGAEAAKGEVLLFTDGDLVIPASQLRPFVAAVSHGTDVALNDYSGPVRSKFP-H 162 +DVGRS+G AKGE++LF DGD VIPAS+L PF A++ GTDVALND + + + P H Sbjct: 336 NDVGRSLGTYFAKGEIVLFIDGDFVIPASELYPFAKAIADGTDVALNDLNHYLDLRVPLH 395 Query: 163 PVVLSKHALNIMLGRSDLKGCSLTAVPHXXXXXXXXXXXXXXXXXPPLAHAQAVLDGLLV 222 V K+ALN+ R DL SL AVP+ P +A +A+L G V Sbjct: 396 LVTAFKYALNLACDRKDLGVGSLVAVPNAFSRKCLKQIGYRSLLAPCVAQVKAILSGFEV 455 Query: 223 KAVHKVPVGRLNAVRPKQ----AGADPLREVILTDHLDAAGMVLQRRGERAGFNDGNRRR 278 V +V V ++N +RP + G P I+ DH++ ++ G R GF+DGNR+R Sbjct: 456 ACVSRVEVDKMNRIRPSEHLAKIGHPPAVLRIIGDHIEGLEQLIGLTGSRGGFHDGNRKR 515 Query: 279 EMV 281 +++ Sbjct: 516 DIL 518 Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 86/245 (35%), Positives = 129/245 (52%), Gaps = 8/245 (3%) Query: 44 VSVIIPAMNEAGTIAKVIAGARGVHPRCEVIVVVNGSLDNTADIALSQGARVILFEQPLG 103 +SVIIPA NE TI+ VI +G++P E+IVV NG D T +A G +V+ + + LG Sbjct: 9 LSVIIPACNEIDTISDVIQSVKGLNP-LEIIVVANGCTDGTETVAEHLGCKVLRYTEKLG 67 Query: 104 HDVGRSIGAEAAKGEVLLFTDGDLVIPASQLRPFVAAVSHG-TDVALNDYSG-PVRSKFP 161 +DVGR+ GA+ A G+VLLF DGD I S+L+ F+ + + DV LN+ ++ + P Sbjct: 68 NDVGRAAGAKEAIGDVLLFIDGDFAIQTSKLQLFLNPILYNQADVVLNNLDALFLKRQKP 127 Query: 162 HPVVLSKHALNIMLGRSDLKGCSLTAVPHXXXXXXXXXXXXXXXXXPPLAHAQAVLDGLL 221 + + + + LN +L R +LK SL AVPH P LAH + V Sbjct: 128 NSITVWRQILNSILEREELKIDSLLAVPHALTKEVVQSIGYECFVNPILAHLRLVQGKWR 187 Query: 222 VKAVHKVPVGRLNAVRPKQAGA-----DPLREVILTDHLDAAGMVLQRRGERAGFNDGNR 276 + + V N RP + A P + ++ DH++A + ER G+ DGNR Sbjct: 188 ISRHCAIDVITPNKFRPTEHAAYGTDLSPSEKRMIGDHIEAVAERIVGSDERGGYCDGNR 247 Query: 277 RREMV 281 +R+ V Sbjct: 248 KRDSV 252 >Q63GD3.1 Q63GD3_BACCZ Glycosyltransferase, involved in cell wall biogenesis EC=2.4.-.- Length = 518 Score = 180 bits (457), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 103/243 (42%), Positives = 143/243 (58%), Gaps = 6/243 (2%) Query: 44 VSVIIPAMNEAGTIAKVIAGARGVHPRCEVIVVVNGSLDNTADIALSQGARVILFEQPLG 103 +SVIIP +E TI VI R + P E+IVVVNGS D TA IA +GA I++++ LG Sbjct: 277 LSVIIPVQDEEKTIGNVIEELRKIEP-FEIIVVVNGSSDQTATIAKDKGATTIVYKEALG 335 Query: 104 HDVGRSIGAEAAKGEVLLFTDGDLVIPASQLRPFVAAVSHGTDVALNDYSGPVRSKFP-H 162 +DVGRS+G AKGE++LF DGD VIPAS+L PF A++ GTDVALND + + + P H Sbjct: 336 NDVGRSLGTYFAKGEIVLFIDGDFVIPASELYPFAKAIADGTDVALNDLNHYLDLRVPLH 395 Query: 163 PVVLSKHALNIMLGRSDLKGCSLTAVPHXXXXXXXXXXXXXXXXXPPLAHAQAVLDGLLV 222 V K+ALN+ R DL SL AVP+ P +A +A+L G V Sbjct: 396 LVTAFKYALNLACDRKDLGVGSLIAVPNAFSRKCLKQIGYRSLLAPCVAQVKAILSGFEV 455 Query: 223 KAVHKVPVGRLNAVRPKQ----AGADPLREVILTDHLDAAGMVLQRRGERAGFNDGNRRR 278 V +V V ++N +RP + G P I+ DH++ ++ G R GF+DGNR+R Sbjct: 456 ACVSRVEVDKMNRIRPSEHFAKIGHPPAVLRIIGDHIEGLEQLIGLTGSRGGFDDGNRKR 515 Query: 279 EMV 281 +++ Sbjct: 516 DIL 518 Score = 134 bits (336), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 86/245 (35%), Positives = 129/245 (52%), Gaps = 8/245 (3%) Query: 44 VSVIIPAMNEAGTIAKVIAGARGVHPRCEVIVVVNGSLDNTADIALSQGARVILFEQPLG 103 +SVIIPA NE TI+ VI +G++P E+IVV NG D T +A G +V+ + + LG Sbjct: 9 LSVIIPACNEIETISDVIQSVKGLNP-LEIIVVANGCTDGTETVAEHLGCKVLRYTEKLG 67 Query: 104 HDVGRSIGAEAAKGEVLLFTDGDLVIPASQLRPFVAAVSHG-TDVALNDYSG-PVRSKFP 161 +DVGR+ GA+ A G+VLLF DGD I S+L+ F+ + + DV LN+ ++ + P Sbjct: 68 NDVGRAAGAKEAIGDVLLFIDGDFAIQTSKLQLFLNPILYNQADVVLNNLDALFLKRQKP 127 Query: 162 HPVVLSKHALNIMLGRSDLKGCSLTAVPHXXXXXXXXXXXXXXXXXPPLAHAQAVLDGLL 221 + + + + LN +L R +LK SL AVPH P LAH + V Sbjct: 128 NSITVWRQILNSILEREELKIDSLLAVPHALTKEVVQSIGYECFVNPILAHLRLVQSKWR 187 Query: 222 VKAVHKVPVGRLNAVRPKQAGA-----DPLREVILTDHLDAAGMVLQRRGERAGFNDGNR 276 + + V N RP + A P + ++ DH++A + ER G+ DGNR Sbjct: 188 ISRHCAIDVITPNKFRPTEHAAYGTDLSPSEKRMIGDHIEAVAERIVGSDERGGYCDGNR 247 Query: 277 RREMV 281 +R+ V Sbjct: 248 KRDSV 252 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.321 0.137 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,285,403,897 Number of extensions: 47008937 Number of successful extensions: 115221 Number of sequences better than 1.0e-05: 421 Number of HSP's gapped: 115396 Number of HSP's successfully gapped: 638 Length of query: 282 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 148 Effective length of database: 1,798,280,193 Effective search space: 266145468564 Effective search space used: 266145468564 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 130 (54.7 bits)