BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0109.0029.p
         (93 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B1DJ03.1 B1DJ03_9BACL Putative uncharacterized protein                115   2e-24
C0ZKQ5.1 C0ZKQ5_BREBN Putative uncharacterized protein                107   2e-22
B3KDF6.1 B3KDF6_9BACI Putative uncharacterized protein                 82   2e-14

>B1DJ03.1 B1DJ03_9BACL Putative uncharacterized protein
          Length = 86

 Score =  115 bits (287), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 54/71 (76%), Positives = 62/71 (87%)

Query: 1  MRHCSVQVRGLLTREELDRYNGLIEAGTYLEDQGRYDLAYNVQKEIDILILPAIERLKDK 60
          MRHCSVQVRGLLTR+ELDRYN L+E G++LE Q R+DL+Y VQKE+DILILPAIERLK+K
Sbjct: 1  MRHCSVQVRGLLTRDELDRYNALMEVGSFLESQQRHDLSYTVQKEVDILILPAIERLKEK 60

Query: 61 SRARDRATAEY 71
           R RDRAT  Y
Sbjct: 61 GRERDRATELY 71


>C0ZKQ5.1 C0ZKQ5_BREBN Putative uncharacterized protein
          Length = 83

 Score =  107 bits (268), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 48/71 (67%), Positives = 60/71 (84%)

Query: 1  MRHCSVQVRGLLTREELDRYNGLIEAGTYLEDQGRYDLAYNVQKEIDILILPAIERLKDK 60
          MRH S+QVRGL+ REE+DRYN ++E G YLE+QGR+DLA++VQ+E+DILILPAIERLK+K
Sbjct: 1  MRHASIQVRGLMVREEMDRYNAMMEVGLYLEEQGRHDLAWHVQREVDILILPAIERLKEK 60

Query: 61 SRARDRATAEY 71
           R RDR    Y
Sbjct: 61 GRERDRENLRY 71


>B3KDF6.1 B3KDF6_9BACI Putative uncharacterized protein
          Length = 63

 Score = 82.0 bits (201), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 39/48 (81%), Positives = 43/48 (89%)

Query: 24 IEAGTYLEDQGRYDLAYNVQKEIDILILPAIERLKDKSRARDRATAEY 71
          +E G+YLE Q RYDLAY VQ+E+DILILPAIERLKDK RARDRATAEY
Sbjct: 1  MEVGSYLESQERYDLAYTVQQEVDILILPAIERLKDKGRARDRATAEY 48


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.318    0.137    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 409,961,859
Number of extensions: 13759044
Number of successful extensions: 34833
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 34833
Number of HSP's successfully gapped: 3
Length of query: 93
Length of database: 3,060,696,203
Length adjustment: 62
Effective length of query: 31
Effective length of database: 2,476,593,273
Effective search space: 76774391463
Effective search space used: 76774391463
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 126 (53.1 bits)