BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0109.0028.p (397 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KKL9.1 B3KKL9_9BACI FAD-dependent pyridine nucleotide-disulphi... 658 0.0 B1DJ04.1 B1DJ04_9BACL FAD-dependent pyridine nucleotide-disulphi... 634 e-180 C0ZKQ6.1 C0ZKQ6_BREBN Putative NADH dehydrogenase EC=1.6.99.3 514 e-144 A8W0J4.1 A8W0J4_9BACI S-adenosyl-methyltransferase MraW 457 e-127 B7GKL7.1 B7GKL7_ANOFW NADH dehydrogenase, FAD-containing subunit 454 e-126 >B3KKL9.1 B3KKL9_9BACI FAD-dependent pyridine nucleotide-disulphide oxidoreductase Length = 397 Score = 658 bits (1698), Expect = 0.0, Method: Compositional matrix adjust. Identities = 318/396 (80%), Positives = 349/396 (88%) Query: 1 MSSIPKIVILGAGYGGILTAQRLQKALNYNEADVTLVNRHEYHYFTTHLHMPAAGTDSIE 60 MSSIPKIVILGAGYGGILTAQRLQK LNYNEADVTLVNRH+YHY TTHLHMPAAGTDSIE Sbjct: 1 MSSIPKIVILGAGYGGILTAQRLQKELNYNEADVTLVNRHDYHYITTHLHMPAAGTDSIE 60 Query: 61 HTRVSISKLIDEFKIDLVKSSVQEIRTQQKKVILEDGTLSYDYLVIALGGEPETFGIPGL 120 +TRVSISKLIDEFKIDLVKSSVQEIR KKVILEDGTLSYDYLVI LGGEPETFGIPGL Sbjct: 61 NTRVSISKLIDEFKIDLVKSSVQEIRLHDKKVILEDGTLSYDYLVIGLGGEPETFGIPGL 120 Query: 121 DKYALTIRSINSVRLIREHIEYQFAKYKNENNAQEHINFVVGGAGFSGIEFVAELADRIP 180 ++A+TIRSINSVRLIREHIEYQFA YKNE QE INFVVGGAGFSGIEFVAELADRIP Sbjct: 121 AEHAMTIRSINSVRLIREHIEYQFALYKNERRPQERINFVVGGAGFSGIEFVAELADRIP 180 Query: 181 ALCKEFDVDPSMVNIYNVEAAPTALPGFAPELVEHAMTVLTKKGVTFKIGVAIKECLPGG 240 LCKE+DVDP++VNIYNVEAAP+ALPGFAPELVE+AM VL KKGVTFK+G+AIKECLPGG Sbjct: 181 RLCKEYDVDPTLVNIYNVEAAPSALPGFAPELVEYAMNVLEKKGVTFKMGIAIKECLPGG 240 Query: 241 VILATGEEIKASTIVWTGGIRGNRLIEAAGFEAMRGRVKVDEYLRAPGHENIFIIGDGSL 300 V+L GEEI+A+T+VWTGGIRGNRL+E+AGFE MRGRVKVDEYLRAPG+ENI+IIGD SL Sbjct: 241 VVLNNGEEIRAATVVWTGGIRGNRLVESAGFETMRGRVKVDEYLRAPGYENIYIIGDNSL 300 Query: 301 MINPEGRPYPPTAQIAMQQGECCAHNLVAAIRSQQPKKFAFSNKGTVASLGKGQGIAVVG 360 + N EGRPYPPTAQ+A+ G C A N+V AIR F KGT +SL + A+VG Sbjct: 301 IFNEEGRPYPPTAQMAIPPGVCWADNIVTAIRDNSMPSLKFPLKGTASSLAPVESSAIVG 360 Query: 361 DKKYKGWTAAQLKKVVDMRYLFIIGGIPLVLKKGRF 396 DKKY+GW AAQLKK+VD+RYL II GIPLVLKKG + Sbjct: 361 DKKYQGWKAAQLKKLVDLRYLVIIRGIPLVLKKGTY 396 >B1DJ04.1 B1DJ04_9BACL FAD-dependent pyridine nucleotide-disulphide oxidoreductase Length = 401 Score = 634 bits (1634), Expect = e-180, Method: Compositional matrix adjust. Identities = 299/388 (77%), Positives = 342/388 (88%) Query: 10 LGAGYGGILTAQRLQKALNYNEADVTLVNRHEYHYFTTHLHMPAAGTDSIEHTRVSISKL 69 LGAGYGG+LTA RLQK LNYNEADVTLVN+H+YHY TTHLHMPAAGTD+ E+ RVSISKL Sbjct: 14 LGAGYGGVLTALRLQKELNYNEADVTLVNKHDYHYITTHLHMPAAGTDNPENARVSISKL 73 Query: 70 IDEFKIDLVKSSVQEIRTQQKKVILEDGTLSYDYLVIALGGEPETFGIPGLDKYALTIRS 129 IDEFKID VKS+V +IR Q KKVILEDGTLSYDYLVI LGGEPETFGIPGL +YA+ IRS Sbjct: 74 IDEFKIDFVKSTVVQIRPQDKKVILEDGTLSYDYLVIGLGGEPETFGIPGLGEYAMNIRS 133 Query: 130 INSVRLIREHIEYQFAKYKNENNAQEHINFVVGGAGFSGIEFVAELADRIPALCKEFDVD 189 INSVRLIREHIEYQFA++K E + +++ F+VGGAGF+GIEF+ EL+DRIP LCK+FDVD Sbjct: 134 INSVRLIREHIEYQFARFKREPHRTDYLTFIVGGAGFTGIEFIGELSDRIPELCKQFDVD 193 Query: 190 PSMVNIYNVEAAPTALPGFAPELVEHAMTVLTKKGVTFKIGVAIKECLPGGVILATGEEI 249 P++V IYN+EAAPTALPGF PELVE+AM VLTKKGVTF+IG AIKEC P GV++ GEEI Sbjct: 194 PALVKIYNIEAAPTALPGFDPELVEYAMDVLTKKGVTFRIGTAIKECTPDGVVVGEGEEI 253 Query: 250 KASTIVWTGGIRGNRLIEAAGFEAMRGRVKVDEYLRAPGHENIFIIGDGSLMINPEGRPY 309 K+ T++WTGGIRGNRLIE AGFE MRGRVKVD+ LRAPGHENI+I+GD SLM NPEGRPY Sbjct: 254 KSQTVIWTGGIRGNRLIEDAGFETMRGRVKVDDNLRAPGHENIYIVGDNSLMFNPEGRPY 313 Query: 310 PPTAQIAMQQGECCAHNLVAAIRSQQPKKFAFSNKGTVASLGKGQGIAVVGDKKYKGWTA 369 PPTAQIAMQQG CAHNL+A+IR+Q K F FSNKGTVASLGKG+ I + KKYKG TA Sbjct: 314 PPTAQIAMQQGVVCAHNLIASIRNQPLKAFVFSNKGTVASLGKGEAIGIAFGKKYKGRTA 373 Query: 370 AQLKKVVDMRYLFIIGGIPLVLKKGRFL 397 A LKK++D+RYLFIIGGIPLVL+KG+FL Sbjct: 374 AWLKKMIDLRYLFIIGGIPLVLRKGKFL 401 >C0ZKQ6.1 C0ZKQ6_BREBN Putative NADH dehydrogenase EC=1.6.99.3 Length = 396 Score = 514 bits (1325), Expect = e-144, Method: Compositional matrix adjust. Identities = 240/390 (61%), Positives = 307/390 (78%), Gaps = 1/390 (0%) Query: 5 PKIVILGAGYGGILTAQRLQKALNYNEADVTLVNRHEYHYFTTHLHMPAAGTDSIEHTRV 64 PKI+ILGAGYGG+LT +LQK LNYNEA++TLVN+H YHY TT LH PAAGT +H RV Sbjct: 4 PKILILGAGYGGLLTTLQLQKKLNYNEAEITLVNKHNYHYITTWLHEPAAGTAPADHARV 63 Query: 65 SISKLIDEFKIDLVKSSVQEIRTQQKKVILEDG-TLSYDYLVIALGGEPETFGIPGLDKY 123 S+ ++++ K++ VK +VQ I+++++ V L++G L YDYLVI LG EPETFGI GL ++ Sbjct: 64 SLDGILNKDKVNFVKGTVQAIQSEEQTVTLDNGEVLPYDYLVIGLGSEPETFGIEGLKEH 123 Query: 124 ALTIRSINSVRLIREHIEYQFAKYKNENNAQEHINFVVGGAGFSGIEFVAELADRIPALC 183 A +IRSIN+VR IREHIEY F+K+KNE + +++ FVVGGAGF+GIEF EL DR+P LC Sbjct: 124 AFSIRSINAVRNIREHIEYMFSKFKNEPDRMDYLTFVVGGAGFTGIEFCGELGDRLPELC 183 Query: 184 KEFDVDPSMVNIYNVEAAPTALPGFAPELVEHAMTVLTKKGVTFKIGVAIKECLPGGVIL 243 +EFDVDP +V +Y +EAAPTALPGF PEL+++A+ VL +KG+ FKIG IK+C P GV+L Sbjct: 184 REFDVDPELVKVYCIEAAPTALPGFDPELIQYAINVLERKGIVFKIGTPIKQCTPDGVLL 243 Query: 244 ATGEEIKASTIVWTGGIRGNRLIEAAGFEAMRGRVKVDEYLRAPGHENIFIIGDGSLMIN 303 TGEEIK+ T++W G+RGN ++E AGFE MRGRVKVDEYLRAPGHEN+F++GD +L+ N Sbjct: 244 NTGEEIKSKTVIWAAGVRGNSIVEKAGFEVMRGRVKVDEYLRAPGHENVFVVGDCALIFN 303 Query: 304 PEGRPYPPTAQIAMQQGECCAHNLVAAIRSQQPKKFAFSNKGTVASLGKGQGIAVVGDKK 363 EGRPYPPTAQIA+Q+GE NL A IR P+KF +GT+ASLGKG+GI VG KK Sbjct: 304 EEGRPYPPTAQIAVQEGETLGENLAALIRGDLPQKFIPHLQGTLASLGKGEGIGQVGSKK 363 Query: 364 YKGWTAAQLKKVVDMRYLFIIGGIPLVLKK 393 G TAA +KK D+RYL+ IGG+ L LKK Sbjct: 364 LFGSTAAMMKKASDLRYLYKIGGVGLALKK 393 >A8W0J4.1 A8W0J4_9BACI S-adenosyl-methyltransferase MraW Length = 455 Score = 457 bits (1176), Expect = e-127, Method: Compositional matrix adjust. Identities = 226/399 (56%), Positives = 294/399 (73%), Gaps = 3/399 (0%) Query: 1 MSSIPKIVILGAGYGGILTAQRLQKALNYNEADVTLVNRHEYHYFTTHLHMPAAGTDSIE 60 M+ PK+VILGAGYGG++TA RLQKA + EA++ LVN+H YHY TT LH PAAGT + Sbjct: 54 MNQKPKVVILGAGYGGMMTASRLQKANMHQEAEIVLVNKHNYHYQTTWLHEPAAGTLHHD 113 Query: 61 HTRVSISKLIDEFKIDLVKSSVQEIRTQQKKVILEDGTLSYDYLVIALGGEPETFGIPGL 120 TR+ IS +ID KI +K V++I + KKV L+ G L YDYLV+ LG EPETFGIPG+ Sbjct: 114 RTRMKISDVIDTNKIQFIKDGVKKIDRENKKVFLDSGELDYDYLVLGLGSEPETFGIPGV 173 Query: 121 DKYALTIRSINSVRLIREHIEYQFAKYKNENNAQEH-INFVVGGAGFSGIEFVAELADRI 179 ++A +IRS+NSVRLIREHIEY FA Y ++ E + FVV GAGF+GIEFV EL++RI Sbjct: 174 SQHAFSIRSVNSVRLIREHIEYMFANYNRQDEKPEDLLTFVVAGAGFTGIEFVGELSERI 233 Query: 180 PALCKEFDVDPSMVNIYNVEAAPTALPGFAPELVEHAMTVLTKKGVTFKIGVAIKECLPG 239 P LC E+D+ V +Y+VEAAP+ALPGF ELVE+AM +L +GV FKI IKE G Sbjct: 234 PELCDEYDIARDKVKVYSVEAAPSALPGFDEELVEYAMNLLESRGVDFKISTPIKEVQEG 293 Query: 240 GVILATGEEIKASTIVWTGGIRGNRLIEAAGFEAMRGRVKVDEYLRAPGHENIFIIGDGS 299 VIL GEEI + TIVWT G+RGN +IE +GFE MRGRVKV++ +RAP +E+IFI+GD + Sbjct: 294 KVILEGGEEIHSRTIVWTTGVRGNSVIEESGFENMRGRVKVNKDMRAPDNEDIFILGDCA 353 Query: 300 LMINPE-GRPYPPTAQIAMQQGECCAHNLVAAIRSQQP-KKFAFSNKGTVASLGKGQGIA 357 L+IN E RPYPPTA+IA+QQ ++NL I+ + ++F KGTVASLG + I Sbjct: 354 LIINEEINRPYPPTAKIAIQQAYTLSNNLKKLIKGETNLEEFKPDIKGTVASLGGKEAIG 413 Query: 358 VVGDKKYKGWTAAQLKKVVDMRYLFIIGGIPLVLKKGRF 396 VVGD+K G +A+ +KK++D RYL+++GG+PLVLKKG+ Sbjct: 414 VVGDRKLYGNSASAMKKIIDNRYLYLLGGMPLVLKKGKL 452 >B7GKL7.1 B7GKL7_ANOFW NADH dehydrogenase, FAD-containing subunit Length = 410 Score = 454 bits (1168), Expect = e-126, Method: Compositional matrix adjust. Identities = 228/399 (57%), Positives = 293/399 (73%), Gaps = 7/399 (1%) Query: 5 PKIVILGAGYGGILTAQRLQKALNYNEADVTLVNRHEYHYFTTHLHMPAAGTDSIEHTRV 64 P +V+LGAGYGG++T RLQK + NEA +TLVN+H+YHY +T LH AAGT E R Sbjct: 9 PNVVVLGAGYGGLMTVTRLQKMIGVNEASITLVNKHDYHYESTWLHEAAAGTLHHERVRY 68 Query: 65 SISKLIDEFKIDLVKSSVQEIRTQQKKVILEDGT-LSYDYLVIALGGEPETFGIPGLDKY 123 +I+ +ID K+ ++ +V++I +QK+V+L++ L+YDYLV+ALG E ETFGI GL +Y Sbjct: 69 AIADVIDRSKVKFIQDTVEKINLEQKQVLLQNHEPLTYDYLVVALGFESETFGIKGLKEY 128 Query: 124 ALTIRSINSVRLIREHIEYQFAKYKNENNAQ-EHINFVVGGAGFSGIEFVAELADRIPAL 182 A +I ++N+ R IREHIEYQFA Y E + E + VVGGAGF+GIEF+ EL +R+P L Sbjct: 129 AFSIANVNAARQIREHIEYQFATYSTEEEKRDERLTIVVGGAGFTGIEFLGELVNRVPEL 188 Query: 183 CKEFDVDPSMVNIYNVEAAPTALPGFAPELVEHAMTVLTKKGVTFKIGVAIKECLPGGVI 242 C+E+DVDP+ V I VEAAPT LPGF PELVE+A+ VL KKGV FKIG AIKEC P G+I Sbjct: 189 CREYDVDPNKVRIICVEAAPTVLPGFDPELVEYAVNVLEKKGVEFKIGTAIKECTPEGII 248 Query: 243 LATG---EEIKASTIVWTGGIRGNRLIEAAGFEAMRGRVKVDEYLRAPGHENIFIIGDGS 299 ++ EEIKA T+VW G+RG+R+I+ +GFEAMRGRVKVD +LRAPGHE++F++GD + Sbjct: 249 VSKDDQVEEIKAGTVVWAAGVRGSRVIDESGFEAMRGRVKVDPFLRAPGHEDVFVVGDCA 308 Query: 300 LMINPE-GRPYPPTAQIAMQQGECCAHNLVAAIRSQ-QPKKFAFSNKGTVASLGKGQGIA 357 L+IN E RPYPPTAQIAMQQGE CA NL IR Q + + F KGTV SLG I Sbjct: 309 LIINEETNRPYPPTAQIAMQQGEVCAKNLAVLIRGQGELQPFKPDLKGTVCSLGHDDAIG 368 Query: 358 VVGDKKYKGWTAAQLKKVVDMRYLFIIGGIPLVLKKGRF 396 VV KK G A+ +KKV+D R L++IGG LV KKG+F Sbjct: 369 VVFGKKIWGAKASVMKKVIDNRALYLIGGPTLVAKKGKF 407 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.138 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,433,980,554 Number of extensions: 103288301 Number of successful extensions: 287188 Number of sequences better than 1.0e-05: 2385 Number of HSP's gapped: 280026 Number of HSP's successfully gapped: 2397 Length of query: 397 Length of database: 3,060,696,203 Length adjustment: 138 Effective length of query: 259 Effective length of database: 1,760,596,133 Effective search space: 455994398447 Effective search space used: 455994398447 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 132 (55.5 bits)