BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0109.0026.p (220 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KKM2.1 B3KKM2_9BACI YheD 238 2e-61 B1DJ08.1 B1DJ08_9BACL Putative uncharacterized protein 218 4e-55 B1DBZ9.1 B1DBZ9_9BACL Putative uncharacterized protein 109 2e-22 B1D4V2.1 B1D4V2_9BACL Putative uncharacterized protein 102 2e-20 B3K957.1 B3K957_9BACI Putative uncharacterized protein 100 8e-20 >B3KKM2.1 B3KKM2_9BACI YheD Length = 220 Score = 238 bits (608), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 119/219 (54%), Positives = 143/219 (65%) Query: 1 MAGRQLASKWLKTEALLSDPRVAGYIPRTMEYSAAGLLGMLRKYXXXXXXXXXXXXXXXX 60 MAGRQLASKWLKTEALL+DP+VA YIP T Y L+ ML ++ Sbjct: 1 MAGRQLASKWLKTEALLTDPQVAPYIPATQSYGGDTLVSMLDEHEMVVIKPIVGTGGNGV 60 Query: 61 XXXXRNSRGYGFTHMHSTRMYRDFSSMKRALDLFKAKRKYLMQQGISLAQIGGRPIDYRV 120 ++ GY TH T +S+ L+ K KR+Y++QQGI LA+I GRP+DYRV Sbjct: 61 IRIQKDGTGYLVTHKRRTVHVDTLNSLLHVLNRMKLKRRYMIQQGIHLAKIQGRPLDYRV 120 Query: 121 KVAKNGAHWEFRSMVGRVARPGLFVTNLCKGGTMLSCREGLRISLPRIRTSAKKAEMRSL 180 KV K WEFR+M+GR+A PGLFVTN+CKGGT+L CR LR+SLP I K+ EMR L Sbjct: 121 KVVKERGRWEFRAMLGRLASPGLFVTNICKGGTLLRCRHALRLSLPHINAREKRNEMRYL 180 Query: 181 TLICIEVLERHFPGIGVLGFDYAVDRRGKIWILEVNTRP 219 T CI +LE FPGIG LGFDY +D GKIWILEVNTRP Sbjct: 181 TRQCITILESRFPGIGELGFDYGLDVEGKIWILEVNTRP 219 >B1DJ08.1 B1DJ08_9BACL Putative uncharacterized protein Length = 223 Score = 218 bits (554), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 107/218 (49%), Positives = 136/218 (62%) Query: 3 GRQLASKWLKTEALLSDPRVAGYIPRTMEYSAAGLLGMLRKYXXXXXXXXXXXXXXXXXX 62 GR + KW K ALL+DP +A +IP T Y+A L ML K+ Sbjct: 6 GRPVPDKWAKQAALLADPFIAPHIPPTKLYNAGNLRSMLGKHQMVVIKPVIGTGGHGVIK 65 Query: 63 XXRNSRGYGFTHMHSTRMYRDFSSMKRALDLFKAKRKYLMQQGISLAQIGGRPIDYRVKV 122 + S GY FT +T Y F ++K ALD + R YL+Q+GI LA++G RPIDYRVK Sbjct: 66 VSKTSAGYSFTSHSTTHSYASFEALKSALDKKRKNRPYLIQKGIRLAKVGSRPIDYRVKY 125 Query: 123 AKNGAHWEFRSMVGRVARPGLFVTNLCKGGTMLSCREGLRISLPRIRTSAKKAEMRSLTL 182 K WE+RSMVGR+A+PGLFVTNLC+GGTM++ EG+R SL R +KK +MR LT+ Sbjct: 126 VKTETGWEYRSMVGRIAKPGLFVTNLCQGGTMVTAAEGIRRSLSRSLVGSKKQKMRDLTV 185 Query: 183 ICIEVLERHFPGIGVLGFDYAVDRRGKIWILEVNTRPK 220 +LE FPG+G LGFDY +D GKIWI EVNTRP+ Sbjct: 186 ASTRILEDRFPGVGQLGFDYGIDVNGKIWIFEVNTRPQ 223 >B1DBZ9.1 B1DBZ9_9BACL Putative uncharacterized protein Length = 253 Score = 109 bits (272), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 70/223 (31%), Positives = 107/223 (47%), Gaps = 4/223 (1%) Query: 1 MAGRQLASKWLKTEALLSDPRVAGYIPRTMEYSAAGLLGMLRKYXXXXXXXXXXXXXXXX 60 M+ + + SKW KT LL P + YIP T ++ L ML +Y Sbjct: 1 MSIQLVYSKWEKTNVLLHSPALREYIPSTRLFNKENLQLMLAEYGMVYVKPVNGTFGKGV 60 Query: 61 XXXXR---NSRGYGFTHMHSTRMYRDFSSMKRALDLFKAKRKYLMQQGISLAQIGGRPID 117 R ++GY + + R + + ++L R+YL+Q+GI L + R D Sbjct: 61 MRVERLKQAAKGYKYQLNTTIRTFPTLELLHQSLAKRINGRRYLVQRGIDLLRHKNRRFD 120 Query: 118 YRVKVAKN-GAHWEFRSMVGRVARPGLFVTNLCKGGTMLSCREGLRISLPRIRTSAKKAE 176 RV V +N HWE ++GR+A P VTN GGT +S L + Sbjct: 121 IRVMVQRNENNHWEATGIIGRLAHPAKVVTNYHNGGTPMSFERLLSSHQSPTQKMIYAMR 180 Query: 177 MRSLTLICIEVLERHFPGIGVLGFDYAVDRRGKIWILEVNTRP 219 ++ ++L + LE+H+PGI LG D A+D++ + WILEVNT+P Sbjct: 181 LKQISLDIAKELEKHYPGIKELGIDIAIDQQQRPWILEVNTKP 223 >B1D4V2.1 B1D4V2_9BACL Putative uncharacterized protein Length = 249 Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 64/216 (29%), Positives = 100/216 (46%), Gaps = 9/216 (4%) Query: 9 KWLKTEALLSDPRVAGYIPRTMEYSAAGLLGMLRKYXXXXXXXXXXXXXXXXXXXXRNSR 68 KWLK AL + + Y+P T +++ G + M+ +Y Sbjct: 12 KWLKHVALSGEEELRDYLPDTEQFTPKGFISMIDRYPVLFVKPDLGMKGQGVMKVYYKD- 70 Query: 69 GYGFTHMHSTRMYRDFSSMKRA---LDLFKAKRKYLMQQGISLAQIGGRPIDYRVKVA-K 124 G + + F S K A L ++YLMQQGI L QI G PID+R+ + + Sbjct: 71 --GRIVIRTEDSRYSFQSAKFAAIKLKQLIGTKRYLMQQGIDLIQIDGNPIDFRILLHLR 128 Query: 125 NGAHWEFRSMVGRVARPGLFVTNLCKGGTMLSCREGLRISLPRIRTSAKKAEMRSLTLIC 184 W+F ++G+VA P FVTN GG + + L L R + ++R + Sbjct: 129 RDETWKFFGVMGKVAAPNRFVTNHSSGGKAIRLHQAL--GLTRQECEPWEKKLREMAFKV 186 Query: 185 IEVLERHFPGIGVLGFDYAVDRRGKIWILEVNTRPK 220 +++HFP I LG D A+D ++W+LE NT+P+ Sbjct: 187 ASGMKKHFPLITELGLDIAIDTEHRVWLLEANTKPQ 222 >B3K957.1 B3K957_9BACI Putative uncharacterized protein Length = 263 Score = 100 bits (249), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 67/218 (30%), Positives = 102/218 (46%), Gaps = 4/218 (1%) Query: 6 LASKWLKTEALLSDPRVAGYIPRTMEYSAAGLLGMLRKYXXXXXXXXXXXXXXXXXXXXR 65 + SKW KT+ L D Y+P T+ +S L ML Y + Sbjct: 20 IKSKWKKTKWLNEDAYFRQYVPHTLPFSKKNLNAMLADYTTVFFKPTDGSGGNNIIRIRK 79 Query: 66 NSRGYGFTHMHSTRMYRDFSSMKRALDLFKAKRKYLMQQGISLAQIGGRPIDYRVKVAKN 125 GY + Y S + R L+ F R YL+Q+GI LA+ G+P D RV V K Sbjct: 80 TGGGYQSQLNTTKTSYSSSSQLYRDLNRFAGSRPYLLQKGIRLAKSNGKPFDIRVMVQKT 139 Query: 126 --GAHWEFRSMVGRVARPGLFVTNLCKGGTMLSCREGLR-ISLPRIRTSAKKAEMRSLTL 182 GA W ++ +V P TN +GG++ + ++ + + ++E++ L + Sbjct: 140 REGA-WVGTALFTKVGNPNKVATNYNQGGSIGTFKKTMSGANFDSAFIQQLESELKGLGV 198 Query: 183 ICIEVLERHFPGIGVLGFDYAVDRRGKIWILEVNTRPK 220 + +RH+ G LG D AVD +G+ WILEVNTRP+ Sbjct: 199 AVGKNFDRHYKGFKELGLDVAVDSKGRPWILEVNTRPQ 236 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.325 0.139 0.422 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,139,113,953 Number of extensions: 37778858 Number of successful extensions: 94044 Number of sequences better than 1.0e-05: 165 Number of HSP's gapped: 93882 Number of HSP's successfully gapped: 167 Length of query: 220 Length of database: 3,060,696,203 Length adjustment: 130 Effective length of query: 90 Effective length of database: 1,835,964,253 Effective search space: 165236782770 Effective search space used: 165236782770 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 128 (53.9 bits)