BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0109.0024.p (242 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C2S3Z7.1 C2S3Z7_BACCE Putative uncharacterized protein 286 8e-76 C3F1S4.1 C3F1S4_BACTU Putative uncharacterized protein 286 9e-76 B7JPJ7.1 B7JPJ7_BACC0 Putative uncharacterized protein 286 9e-76 B7HS42.1 B7HS42_BACC7 Putative uncharacterized protein 286 9e-76 B5UZM7.1 B5UZM7_BACCE Putative uncharacterized protein 286 9e-76 >C2S3Z7.1 C2S3Z7_BACCE Putative uncharacterized protein Length = 238 Score = 286 bits (733), Expect = 8e-76, Method: Compositional matrix adjust. Identities = 131/238 (55%), Positives = 176/238 (73%), Gaps = 1/238 (0%) Query: 1 MPKMPETIKSMENLLSMLDSLMREPAPFWNKFYGDRTKGVPFFADKPDENLVSFVEAGAL 60 M ET+ + E+++ MLDSL+R PFWN+FY +R K VPFF + PDENLVS+++ + Sbjct: 1 MQMKNETLHTQEDIIKMLDSLLRPAEPFWNEFYANREKDVPFFENVPDENLVSYIQKKRV 60 Query: 61 QGGRMLELGCGPGRNAIYAAHHGFDVDAVDLSEEAITWAKERAAEKNATVNFTLGSVFDL 120 G++LELGCGPGRNAIY A+ GFDV AVDLS E I+WAKERA K + F S+F+L Sbjct: 61 SKGKVLELGCGPGRNAIYLANEGFDVTAVDLSIEGISWAKERALAKGVEIEFICNSIFNL 120 Query: 121 SPRSEYDLVYDAGCLHHLWPHRRIGYIEMIHHALKDGGYFGLTCFAPGFTEMGGAMEISD 180 ++E+D VYD+GCLHH+ PHRR+ Y+++I +ALK GGYFGLTCFA G + EI+D Sbjct: 121 EVQNEFDFVYDSGCLHHIPPHRRVNYVDLIKNALKSGGYFGLTCFAAGDLDERNGSEITD 180 Query: 181 WDVYRDRSMHGGQAYSQEKLREIFGGYFELVEIRMMKECAENDPVFGVPFLWTSIWRK 238 WDVYR S+ GG AYS+EKLREIF G FE++EIR M++ + + +FG FLWT++++K Sbjct: 181 WDVYRRWSLQGGLAYSEEKLREIFKG-FEVIEIRKMEQIEQPNTMFGESFLWTALFKK 237 >C3F1S4.1 C3F1S4_BACTU Putative uncharacterized protein Length = 238 Score = 286 bits (733), Expect = 9e-76, Method: Compositional matrix adjust. Identities = 131/238 (55%), Positives = 175/238 (73%), Gaps = 1/238 (0%) Query: 1 MPKMPETIKSMENLLSMLDSLMREPAPFWNKFYGDRTKGVPFFADKPDENLVSFVEAGAL 60 M ET+ + E+++ MLDSL+R PFWN+FY +R K VPFF + PDENLVS+++ + Sbjct: 1 MQMKNETLHTQEDIIKMLDSLLRSAEPFWNEFYANREKDVPFFENVPDENLVSYIQKKRV 60 Query: 61 QGGRMLELGCGPGRNAIYAAHHGFDVDAVDLSEEAITWAKERAAEKNATVNFTLGSVFDL 120 G++LELGCGPGRNAIY A+ GFDV AVDLS E I WAKERA K + F S+F+L Sbjct: 61 SKGKVLELGCGPGRNAIYLANEGFDVTAVDLSIEGINWAKERALAKGVEIEFICDSIFNL 120 Query: 121 SPRSEYDLVYDAGCLHHLWPHRRIGYIEMIHHALKDGGYFGLTCFAPGFTEMGGAMEISD 180 ++E+D VYD+GCLHH+ PHRR+ Y+++I +ALK GGYFGLTCFA G + EI+D Sbjct: 121 EVQNEFDFVYDSGCLHHIPPHRRVNYVDLIKNALKSGGYFGLTCFAAGDLDERNGSEITD 180 Query: 181 WDVYRDRSMHGGQAYSQEKLREIFGGYFELVEIRMMKECAENDPVFGVPFLWTSIWRK 238 WDVYR S+ GG AYS+EKLREIF G FE++EIR M++ + + +FG FLWT++++K Sbjct: 181 WDVYRGWSLQGGLAYSEEKLREIFKG-FEVIEIRKMEQIEQPNTMFGESFLWTALFKK 237 >B7JPJ7.1 B7JPJ7_BACC0 Putative uncharacterized protein Length = 236 Score = 286 bits (733), Expect = 9e-76, Method: Compositional matrix adjust. Identities = 130/234 (55%), Positives = 175/234 (74%), Gaps = 1/234 (0%) Query: 6 ETIKSMENLLSMLDSLMREPAPFWNKFYGDRTKGVPFFADKPDENLVSFVEAGALQGGRM 65 ET+ + E+++ MLDSL+R PFWN+FY +R K VPFF + PDENLVS+++ + G++ Sbjct: 4 ETLHTQEDIIKMLDSLLRSAEPFWNEFYANREKDVPFFENVPDENLVSYIQKKRVSKGKV 63 Query: 66 LELGCGPGRNAIYAAHHGFDVDAVDLSEEAITWAKERAAEKNATVNFTLGSVFDLSPRSE 125 LELGCGPGRNAIY A+ GFDV AVDLS E I WAKERA K + F S+F+L ++E Sbjct: 64 LELGCGPGRNAIYLANEGFDVTAVDLSIEGINWAKERALAKGVEIEFICDSIFNLEVQNE 123 Query: 126 YDLVYDAGCLHHLWPHRRIGYIEMIHHALKDGGYFGLTCFAPGFTEMGGAMEISDWDVYR 185 +D VYD+GCLHH+ PHRR+ Y+++I +ALK GGYFGLTCFA G + EI+DWDVYR Sbjct: 124 FDFVYDSGCLHHIPPHRRVNYVDLIKNALKSGGYFGLTCFAAGDLDERNGSEITDWDVYR 183 Query: 186 DRSMHGGQAYSQEKLREIFGGYFELVEIRMMKECAENDPVFGVPFLWTSIWRKH 239 S+ GG AYS+EKLREIF G FE++EIR M++ + + +FG FLWT++++K+ Sbjct: 184 GWSLQGGLAYSEEKLREIFKG-FEVIEIRKMEQIEQPNTMFGESFLWTALFKKN 236 >B7HS42.1 B7HS42_BACC7 Putative uncharacterized protein Length = 236 Score = 286 bits (733), Expect = 9e-76, Method: Compositional matrix adjust. Identities = 130/233 (55%), Positives = 175/233 (75%), Gaps = 1/233 (0%) Query: 6 ETIKSMENLLSMLDSLMREPAPFWNKFYGDRTKGVPFFADKPDENLVSFVEAGALQGGRM 65 ET+ + E+++ MLDSL+R PFWN+FY +R K VPFF + PDENLVS+++ + G++ Sbjct: 4 ETLHTQEDIIKMLDSLLRPAEPFWNEFYANREKDVPFFENVPDENLVSYIQKKRVSKGKV 63 Query: 66 LELGCGPGRNAIYAAHHGFDVDAVDLSEEAITWAKERAAEKNATVNFTLGSVFDLSPRSE 125 LELGCGPGRNAIY A+ GFDV AVDLS E I+WAKERA K + F S+F+L ++E Sbjct: 64 LELGCGPGRNAIYLANEGFDVTAVDLSIEGISWAKERALAKGVEIEFICNSIFNLEVQNE 123 Query: 126 YDLVYDAGCLHHLWPHRRIGYIEMIHHALKDGGYFGLTCFAPGFTEMGGAMEISDWDVYR 185 +D VYD+GCLHH+ PHRR+ Y+++I +ALK GGYFGLTCFA G + EI+DWDVYR Sbjct: 124 FDFVYDSGCLHHIPPHRRVNYVDLIKNALKSGGYFGLTCFAAGDLDERNGSEITDWDVYR 183 Query: 186 DRSMHGGQAYSQEKLREIFGGYFELVEIRMMKECAENDPVFGVPFLWTSIWRK 238 S+ GG AYS+EKLREIF G FE++EIR M++ + + +FG FLWT++++K Sbjct: 184 RWSLQGGLAYSEEKLREIFKG-FEVIEIRKMEQIEQPNTMFGESFLWTALFKK 235 >B5UZM7.1 B5UZM7_BACCE Putative uncharacterized protein Length = 236 Score = 286 bits (733), Expect = 9e-76, Method: Compositional matrix adjust. Identities = 130/233 (55%), Positives = 175/233 (75%), Gaps = 1/233 (0%) Query: 6 ETIKSMENLLSMLDSLMREPAPFWNKFYGDRTKGVPFFADKPDENLVSFVEAGALQGGRM 65 ET+ + E+++ MLDSL+R PFWN+FY +R K VPFF + PDENLVS+++ + G++ Sbjct: 4 ETLHTQEDIIKMLDSLLRPAEPFWNEFYANREKDVPFFENVPDENLVSYIQKKRVSKGKV 63 Query: 66 LELGCGPGRNAIYAAHHGFDVDAVDLSEEAITWAKERAAEKNATVNFTLGSVFDLSPRSE 125 LELGCGPGRNAIY A+ GFDV AVDLS E I+WAKERA K + F S+F+L ++E Sbjct: 64 LELGCGPGRNAIYLANEGFDVTAVDLSIEGISWAKERALAKGVEIEFICNSIFNLEVQNE 123 Query: 126 YDLVYDAGCLHHLWPHRRIGYIEMIHHALKDGGYFGLTCFAPGFTEMGGAMEISDWDVYR 185 +D VYD+GCLHH+ PHRR+ Y+++I +ALK GGYFGLTCFA G + EI+DWDVYR Sbjct: 124 FDFVYDSGCLHHIPPHRRVNYVDLIKNALKSGGYFGLTCFAAGDLDERNGSEITDWDVYR 183 Query: 186 DRSMHGGQAYSQEKLREIFGGYFELVEIRMMKECAENDPVFGVPFLWTSIWRK 238 S+ GG AYS+EKLREIF G FE++EIR M++ + + +FG FLWT++++K Sbjct: 184 RWSLQGGLAYSEEKLREIFKG-FEVIEIRKMEQIEQPNTMFGESFLWTALFKK 235 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.322 0.139 0.447 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,631,283,359 Number of extensions: 70775271 Number of successful extensions: 152457 Number of sequences better than 1.0e-05: 378 Number of HSP's gapped: 153136 Number of HSP's successfully gapped: 378 Length of query: 242 Length of database: 3,060,696,203 Length adjustment: 132 Effective length of query: 110 Effective length of database: 1,817,122,223 Effective search space: 199883444530 Effective search space used: 199883444530 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)