BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0109.0023.p
         (119 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KKM4.1 B3KKM4_9BACI Iron-sulfur cluster assembly accessory pro...   206   5e-52
B1DJ20.1 B1DJ20_9BACL Iron-sulfur cluster assembly accessory pro...   149   7e-35
A4ISE7.1 A4ISE7_GEOTN HesB protein                                    131   2e-29
B4BSF5.1 B4BSF5_9BACI Iron-sulfur cluster assembly accessory pro...   131   2e-29
O32113.1 YUTM_BACSU Uncharacterized protein yutM                      129   6e-29

>B3KKM4.1 B3KKM4_9BACI Iron-sulfur cluster assembly accessory protein
          Length = 119

 Score =  206 bits (524), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 98/119 (82%), Positives = 105/119 (88%)

Query: 1   MITISEAAAGQLKTMLAEQEIPNMFLRLGVTEGGCSGFSYAMGFDDNETDQDVYMDVQGM 60
           MI+ISE AA +LK MLAEQE PNMFLRLGVT GGCSGFSYAMGFDD ET+ DVYMD+Q M
Sbjct: 1   MISISETAAERLKEMLAEQETPNMFLRLGVTAGGCSGFSYAMGFDDQETEADVYMDLQDM 60

Query: 61  KVVVSKDDIRYLNGLEIDFEESGMTGGFTINNPNATATCGCGSSFRTKDDAGKPAAEPC 119
           KVVV KDD++YLNGLEIDFEESGMTGGFTI+NPNAT TCGCGSSFRT  DAGKP  EPC
Sbjct: 61  KVVVEKDDLKYLNGLEIDFEESGMTGGFTIHNPNATVTCGCGSSFRTATDAGKPNEEPC 119


>B1DJ20.1 B1DJ20_9BACL Iron-sulfur cluster assembly accessory protein
          Length = 118

 Score =  149 bits (377), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 71/114 (62%), Positives = 88/114 (77%)

Query: 1   MITISEAAAGQLKTMLAEQEIPNMFLRLGVTEGGCSGFSYAMGFDDNETDQDVYMDVQGM 60
           MITISE+A+ ++K ML E+  P +FLR+GV EGGC+GFSY MGFDD E + D  ++V  +
Sbjct: 1   MITISESASEKIKEMLEEEGTPGLFLRIGVKEGGCTGFSYGMGFDDEENENDKSLEVADL 60

Query: 61  KVVVSKDDIRYLNGLEIDFEESGMTGGFTINNPNATATCGCGSSFRTKDDAGKP 114
           KVVV  + ++YL GL ID++ES M GGFTI NPNATATCGCGSSFRT   AGKP
Sbjct: 61  KVVVDDESLKYLFGLIIDWKESAMGGGFTIENPNATATCGCGSSFRTAAAAGKP 114


>A4ISE7.1 A4ISE7_GEOTN HesB protein
          Length = 121

 Score =  131 bits (330), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 61/114 (53%), Positives = 81/114 (71%)

Query: 1   MITISEAAAGQLKTMLAEQEIPNMFLRLGVTEGGCSGFSYAMGFDDNETDQDVYMDVQGM 60
           +IT++EAAA Q+K M+ EQE  N +LR+GV  GGCSG SY MGF     D D+ ++  G+
Sbjct: 5   IITLTEAAAFQIKDMMKEQEEENAYLRVGVHGGGCSGLSYGMGFAHERNDDDIELEQHGI 64

Query: 61  KVVVSKDDIRYLNGLEIDFEESGMTGGFTINNPNATATCGCGSSFRTKDDAGKP 114
           K+++ +D    L G  ID+++S + GGFTINNPNA ATCGCGSSFRT  +AG P
Sbjct: 65  KILIDRDSAPILRGTVIDYKQSLLGGGFTINNPNAIATCGCGSSFRTATNAGTP 118


>B4BSF5.1 B4BSF5_9BACI Iron-sulfur cluster assembly accessory protein
          Length = 121

 Score =  131 bits (330), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 61/114 (53%), Positives = 81/114 (71%)

Query: 1   MITISEAAAGQLKTMLAEQEIPNMFLRLGVTEGGCSGFSYAMGFDDNETDQDVYMDVQGM 60
           +IT++EAAA Q+K M+ EQE  N +LR+GV  GGCSG SY MGF     D D+ ++  G+
Sbjct: 5   IITLTEAAAFQIKDMMKEQEEENAYLRVGVHGGGCSGLSYGMGFAHERNDDDIELEQHGI 64

Query: 61  KVVVSKDDIRYLNGLEIDFEESGMTGGFTINNPNATATCGCGSSFRTKDDAGKP 114
           K+++ +D    L G  ID+++S + GGFTINNPNA ATCGCGSSFRT  +AG P
Sbjct: 65  KILIDRDSAPILRGTVIDYKQSLLGGGFTINNPNAIATCGCGSSFRTATNAGTP 118


>O32113.1 YUTM_BACSU Uncharacterized protein yutM
          Length = 120

 Score =  129 bits (325), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 60/113 (53%), Positives = 81/113 (71%)

Query: 2   ITISEAAAGQLKTMLAEQEIPNMFLRLGVTEGGCSGFSYAMGFDDNETDQDVYMDVQGMK 61
           +TI+EAAA  +K M+ E E  N FLR+GV  GGCSG SY MGF+  +++ D   D  G+ 
Sbjct: 5   VTITEAAALHIKDMMKEHEEENAFLRVGVKGGGCSGLSYGMGFEHEKSESDSVFDQHGIT 64

Query: 62  VVVSKDDIRYLNGLEIDFEESGMTGGFTINNPNATATCGCGSSFRTKDDAGKP 114
           V+V K+ +  +NG  ID+++S + GGFTI+NPNA A+CGCGSSFRT  +AGKP
Sbjct: 65  VLVDKESLDIMNGTVIDYKQSMLGGGFTIDNPNAIASCGCGSSFRTATNAGKP 117


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.316    0.134    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 727,671,242
Number of extensions: 29328083
Number of successful extensions: 67096
Number of sequences better than 1.0e-05: 2138
Number of HSP's gapped: 66816
Number of HSP's successfully gapped: 2138
Length of query: 119
Length of database: 3,060,696,203
Length adjustment: 85
Effective length of query: 34
Effective length of database: 2,259,909,928
Effective search space: 76836937552
Effective search space used: 76836937552
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 126 (53.1 bits)