BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0109.0021.p (368 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KKM5.1 B3KKM5_9BACI Radical SAM domain protein 684 0.0 B1DJ21.1 B1DJ21_9BACL Radical SAM domain protein 640 0.0 C0ZKS2.1 C0ZKS2_BREBN Putative uncharacterized protein 521 e-146 A8W0K3.1 A8W0K3_9BACI Cytoplasmic peptidoglycan synthetase domai... 489 e-136 Q9K7F1.1 Q9K7F1_BACHD BH3411 protein 487 e-136 >B3KKM5.1 B3KKM5_9BACI Radical SAM domain protein Length = 368 Score = 684 bits (1766), Expect = 0.0, Method: Compositional matrix adjust. Identities = 319/368 (86%), Positives = 350/368 (95%) Query: 1 MSTLITPQTDARMANIIDKVRGGERLNLEDGVYLYGSNDLLTIGQLANEVNQRKNGNKVY 60 MST++TP TD RMA I+ KV+ GERLNLEDGVYLY ++DLLT+GQLANE N RKNG KVY Sbjct: 1 MSTIVTPFTDQRMAEIVAKVQRGERLNLEDGVYLYQTDDLLTLGQLANEANLRKNGKKVY 60 Query: 61 FIENMSLYFTNVCEAHCAFCNFRKDDGEEGAYTLSGQEMVQYVEQHIHPGVREFHIVGGH 120 FIENMSLYFTNVCE+ CAFCNFRKD GEEG+YTLSG EM++YVEQHIHPG+REFHIVGGH Sbjct: 61 FIENMSLYFTNVCESRCAFCNFRKDQGEEGSYTLSGAEMIEYVEQHIHPGIREFHIVGGH 120 Query: 121 NDKVPFQYYVDSLKALNEAFPQVTLKAYTAAEIDFFTRISGLSIREVLEELRAAGLQSLT 180 N+ VPFQYYVDSLKAL E FP+VTLKAYTAAEI+FFTRISGLS +EVL+EL+ AGLQSLT Sbjct: 121 NNHVPFQYYVDSLKALKERFPEVTLKAYTAAEIEFFTRISGLSTKEVLQELQKAGLQSLT 180 Query: 181 GGGAEILSDQYRKKMRVNKANVEEYLEVHRTAHQLGMKTHTTMLYGSIESHEDRVRHMLQ 240 GGGAEILSDQYR+KM+V+KANV++YL+VHRTAH+LGMKTHTTMLYGSIESHEDR+RHMLQ Sbjct: 181 GGGAEILSDQYRQKMKVDKANVDQYLDVHRTAHKLGMKTHTTMLYGSIESHEDRIRHMLQ 240 Query: 241 IRDLQDETNGFMVFIPLSMQPKNKNAGIMRRNSAYEDLKTIAISRLMLDNFDHIKAYFIN 300 IRDLQDETNGFMVFIPLSMQPKNKNAGIMRRNSAYEDLKTIAISRLMLDN DHIKAYFIN Sbjct: 241 IRDLQDETNGFMVFIPLSMQPKNKNAGIMRRNSAYEDLKTIAISRLMLDNIDHIKAYFIN 300 Query: 301 IGPQLTQVALSFGASDVHGTILKERISHAAGALTPEGLTREELIWLVKGAGKIPVERDTF 360 IGPQLTQVALSFGASDVHGTILKERISHAAGALTPEGLTR+EL+WL++GAG+IPVERDTF Sbjct: 301 IGPQLTQVALSFGASDVHGTILKERISHAAGALTPEGLTRKELVWLIQGAGRIPVERDTF 360 Query: 361 YNEIKVYE 368 YNEIKVYE Sbjct: 361 YNEIKVYE 368 >B1DJ21.1 B1DJ21_9BACL Radical SAM domain protein Length = 367 Score = 640 bits (1651), Expect = 0.0, Method: Compositional matrix adjust. Identities = 300/365 (82%), Positives = 331/365 (90%) Query: 4 LITPQTDARMANIIDKVRGGERLNLEDGVYLYGSNDLLTIGQLANEVNQRKNGNKVYFIE 63 + P + +M +IIDKVR GERL LEDGV+LY S+DLLTIGQLANEVN RKNG KVYFIE Sbjct: 3 ITIPSDNKQMQSIIDKVRNGERLTLEDGVFLYQSDDLLTIGQLANEVNLRKNGKKVYFIE 62 Query: 64 NMSLYFTNVCEAHCAFCNFRKDDGEEGAYTLSGQEMVQYVEQHIHPGVREFHIVGGHNDK 123 NMSLYFTNVCEAHCAFCNFRKD+G GAYTLSGQEM++YVEQH HPGVREFHIVGGHN Sbjct: 63 NMSLYFTNVCEAHCAFCNFRKDEGAPGAYTLSGQEMIEYVEQHFHPGVREFHIVGGHNPH 122 Query: 124 VPFQYYVDSLKALNEAFPQVTLKAYTAAEIDFFTRISGLSIREVLEELRAAGLQSLTGGG 183 VPFQYYVDSLKALNE FP+VTLKAYTAAEIDFF+RISGLS +EVLEEL GL+SLTGGG Sbjct: 123 VPFQYYVDSLKALNERFPEVTLKAYTAAEIDFFSRISGLSYKEVLEELMKVGLKSLTGGG 182 Query: 184 AEILSDQYRKKMRVNKANVEEYLEVHRTAHQLGMKTHTTMLYGSIESHEDRVRHMLQIRD 243 AEILSD YRKKMRV+KA+V +YL+VHRTAH LG++THTTMLYGSIESHEDR+RHM+QIR+ Sbjct: 183 AEILSDHYRKKMRVDKADVSQYLDVHRTAHNLGLRTHTTMLYGSIESHEDRIRHMIQIRE 242 Query: 244 LQDETNGFMVFIPLSMQPKNKNAGIMRRNSAYEDLKTIAISRLMLDNFDHIKAYFINIGP 303 LQDETNGF VFIPLSMQP N AGI RRNSA+EDLKTIAISRLMLDN HIKAYFINIG Sbjct: 243 LQDETNGFQVFIPLSMQPINPKAGIRRRNSAFEDLKTIAISRLMLDNVQHIKAYFINIGT 302 Query: 304 QLTQVALSFGASDVHGTILKERISHAAGALTPEGLTREELIWLVKGAGKIPVERDTFYNE 363 QLTQVAL+ GASD HGTI+KE+ISHAAGALTPEG+TRE+L+WL+KGAG+IPVERDTFYNE Sbjct: 303 QLTQVALTMGASDAHGTIVKEKISHAAGALTPEGITREDLLWLIKGAGRIPVERDTFYNE 362 Query: 364 IKVYE 368 IKVYE Sbjct: 363 IKVYE 367 >C0ZKS2.1 C0ZKS2_BREBN Putative uncharacterized protein Length = 367 Score = 521 bits (1341), Expect = e-146, Method: Compositional matrix adjust. Identities = 242/356 (67%), Positives = 298/356 (83%) Query: 10 DARMANIIDKVRGGERLNLEDGVYLYGSNDLLTIGQLANEVNQRKNGNKVYFIENMSLYF 69 D +A I +KV GERL LEDGV L+ SNDLLTIGQLAN VN RKN + VYF++N+ + Sbjct: 10 DKALAGIAEKVMHGERLTLEDGVTLFNSNDLLTIGQLANVVNYRKNQDNVYFLQNLYINP 69 Query: 70 TNVCEAHCAFCNFRKDDGEEGAYTLSGQEMVQYVEQHIHPGVREFHIVGGHNDKVPFQYY 129 TNVCEAHC FC FR+D+G+EGAYT+S +E++ YVE HPG+REFHIVGGHN PF+YY Sbjct: 70 TNVCEAHCKFCGFRRDEGDEGAYTMSMEELLHYVETRFHPGIREFHIVGGHNQHKPFEYY 129 Query: 130 VDSLKALNEAFPQVTLKAYTAAEIDFFTRISGLSIREVLEELRAAGLQSLTGGGAEILSD 189 +D+L+ L +A+P VT+K+YT AEI+FF+RISGLSIREVL+EL AGLQSLTGGGAEIL++ Sbjct: 130 LDTLRTLRKAYPDVTIKSYTGAEIEFFSRISGLSIREVLQELMKAGLQSLTGGGAEILTE 189 Query: 190 QYRKKMRVNKANVEEYLEVHRTAHQLGMKTHTTMLYGSIESHEDRVRHMLQIRDLQDETN 249 +YR KM KA+ + YL+VHRTAH+LG+KTHTTMLYGSIE+ E+RV HML++R+LQD+TN Sbjct: 190 RYRMKMSPEKASTDMYLQVHRTAHELGLKTHTTMLYGSIETLEERVIHMLRLRELQDDTN 249 Query: 250 GFMVFIPLSMQPKNKNAGIMRRNSAYEDLKTIAISRLMLDNFDHIKAYFINIGPQLTQVA 309 GFMVFIPL++QP AGI RRNSA +DLKT+AISRLMLDNF HIKAYFINIG QLTQ++ Sbjct: 250 GFMVFIPLAVQPIKATAGIKRRNSAIDDLKTMAISRLMLDNFQHIKAYFINIGTQLTQLS 309 Query: 310 LSFGASDVHGTILKERISHAAGALTPEGLTREELIWLVKGAGKIPVERDTFYNEIK 365 L G SD HGT+++ERISH+AGALT + LT +EL+WL+KGAGK +ERDTFYN IK Sbjct: 310 LQMGISDAHGTLIEERISHSAGALTQQALTVDELVWLIKGAGKRALERDTFYNVIK 365 >A8W0K3.1 A8W0K3_9BACI Cytoplasmic peptidoglycan synthetase domain protein Length = 364 Score = 489 bits (1259), Expect = e-136, Method: Compositional matrix adjust. Identities = 224/364 (61%), Positives = 295/364 (81%) Query: 4 LITPQTDARMANIIDKVRGGERLNLEDGVYLYGSNDLLTIGQLANEVNQRKNGNKVYFIE 63 + T D + +I +KV GERL++EDG+YLY + DLL++ Q+AN VN++KNG++VYFIE Sbjct: 1 MTTLTADKNLRDIQEKVMNGERLSIEDGLYLYETPDLLSVAQMANMVNEKKNGDRVYFIE 60 Query: 64 NMSLYFTNVCEAHCAFCNFRKDDGEEGAYTLSGQEMVQYVEQHIHPGVREFHIVGGHNDK 123 NM + TNVCEA CAFC F++ GEEGAYT+ E++ YVE+ + ++EFHIVGGHN Sbjct: 61 NMYINPTNVCEASCAFCGFKRKPGEEGAYTMDEAELLDYVEKRWNDNIQEFHIVGGHNPD 120 Query: 124 VPFQYYVDSLKALNEAFPQVTLKAYTAAEIDFFTRISGLSIREVLEELRAAGLQSLTGGG 183 VPF YY+++++AL + +PQ T+KAYT AEI+FF R G +++EVLE+L+ AGL +L GGG Sbjct: 121 VPFDYYLNTIRALKKHYPQCTIKAYTGAEIEFFARTYGFTMKEVLEQLQEAGLDTLPGGG 180 Query: 184 AEILSDQYRKKMRVNKANVEEYLEVHRTAHQLGMKTHTTMLYGSIESHEDRVRHMLQIRD 243 AEIL+++YR KM KA+ E+LE H AH LGMKTH TMLYG IES E+R+ HM ++R Sbjct: 181 AEILTEEYRAKMSPEKASTFEWLEAHELAHGLGMKTHATMLYGGIESKEERLVHMDRLRK 240 Query: 244 LQDETNGFMVFIPLSMQPKNKNAGIMRRNSAYEDLKTIAISRLMLDNFDHIKAYFINIGP 303 LQD+T+GFMVFIPL+MQPK+ AG+ RR SAY+DL+T+AISRLMLDNFDHIKAY+INIGP Sbjct: 241 LQDKTDGFMVFIPLAMQPKSAGAGLERRTSAYDDLRTVAISRLMLDNFDHIKAYWINIGP 300 Query: 304 QLTQVALSFGASDVHGTILKERISHAAGALTPEGLTREELIWLVKGAGKIPVERDTFYNE 363 QLTQ+AL+FG+SD+HGT+++ERISH+AGALT +G+TR+ELI ++KGA K PVERDTFYN Sbjct: 301 QLTQMALTFGSSDIHGTLIEERISHSAGALTSQGITRKELIHMIKGANKKPVERDTFYNV 360 Query: 364 IKVY 367 IK Y Sbjct: 361 IKEY 364 >Q9K7F1.1 Q9K7F1_BACHD BH3411 protein Length = 364 Score = 487 bits (1253), Expect = e-136, Method: Compositional matrix adjust. Identities = 220/359 (61%), Positives = 295/359 (82%) Query: 9 TDARMANIIDKVRGGERLNLEDGVYLYGSNDLLTIGQLANEVNQRKNGNKVYFIENMSLY 68 TD ++ I +KV GERL +EDG+YLY ++DLL + QLAN+VN KNG+ VYFIENM + Sbjct: 6 TDTKLQEIQEKVEHGERLTIEDGLYLYETSDLLGVAQLANKVNSEKNGDHVYFIENMYIN 65 Query: 69 FTNVCEAHCAFCNFRKDDGEEGAYTLSGQEMVQYVEQHIHPGVREFHIVGGHNDKVPFQY 128 TNVCEA+C+FC F++ G+EGAYT+ + +++YVE+ + +REFHIVGGHN VPF Y Sbjct: 66 PTNVCEANCSFCGFKRKPGQEGAYTMDSETLLRYVEERWNDNIREFHIVGGHNTDVPFDY 125 Query: 129 YVDSLKALNEAFPQVTLKAYTAAEIDFFTRISGLSIREVLEELRAAGLQSLTGGGAEILS 188 Y+D+++ L + FPQVT+KAYT AEI+FF+R++G+S++EVLEEL AGL +L GGGAEIL+ Sbjct: 126 YLDTIRTLKKNFPQVTVKAYTGAEIEFFSRLAGISMKEVLEELIKAGLDTLPGGGAEILT 185 Query: 189 DQYRKKMRVNKANVEEYLEVHRTAHQLGMKTHTTMLYGSIESHEDRVRHMLQIRDLQDET 248 ++YR KM +KA+ +++LE H AH LG+KTH TMLYGSIES+E+R+ HM ++R LQD+T Sbjct: 186 ERYRAKMSPDKASTDQWLEAHEIAHGLGLKTHATMLYGSIESNEERLIHMDRVRQLQDKT 245 Query: 249 NGFMVFIPLSMQPKNKNAGIMRRNSAYEDLKTIAISRLMLDNFDHIKAYFINIGPQLTQV 308 NG+MVFIPL+MQP++ AG+ RR SA++D++TIAISRLMLDN DHIKAY+INIG QLTQ+ Sbjct: 246 NGYMVFIPLAMQPRSVKAGLKRRTSAFDDMRTIAISRLMLDNIDHIKAYWINIGVQLTQM 305 Query: 309 ALSFGASDVHGTILKERISHAAGALTPEGLTREELIWLVKGAGKIPVERDTFYNEIKVY 367 AL+FG+ D+HGT+++ERISH+ GALT +G+TR+ELI L+K A K PVERDTFYN IK Y Sbjct: 306 ALTFGSDDIHGTLIEERISHSVGALTSQGITRDELIHLIKSANKTPVERDTFYNIIKSY 364 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.136 0.390 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,182,747,484 Number of extensions: 90699086 Number of successful extensions: 220855 Number of sequences better than 1.0e-05: 539 Number of HSP's gapped: 220009 Number of HSP's successfully gapped: 540 Length of query: 368 Length of database: 3,060,696,203 Length adjustment: 137 Effective length of query: 231 Effective length of database: 1,770,017,148 Effective search space: 408873961188 Effective search space used: 408873961188 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 132 (55.5 bits)