BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0109.0020.p (347 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KKM6.1 B3KKM6_9BACI FAD-dependent pyridine nucleotide-disulphi... 462 e-128 B1DJ22.1 B1DJ22_9BACL FAD-dependent pyridine nucleotide-disulphi... 442 e-122 Q5WDT9.1 Q5WDT9_BACSK NADH dehydrogenase EC=1.6.99.3 396 e-108 Q9K7E7.1 Q9K7E7_BACHD NADH dehydrogenase 392 e-107 A4ISF0.1 A4ISF0_GEOTN Pyridine nucleotide-disulphide oxidoreductase 385 e-105 >B3KKM6.1 B3KKM6_9BACI FAD-dependent pyridine nucleotide-disulphide oxidoreductase Length = 352 Score = 462 bits (1188), Expect = e-128, Method: Compositional matrix adjust. Identities = 220/336 (65%), Positives = 268/336 (79%) Query: 11 IQKLLDNHLPHDVEIVLVDRMPYQGIKTEYYALAAGTVTDYHLRIQFPVHPRLTVRYGEV 70 IQ+L +LP DVE+VL+DRMPYQG+KTEYYALAAGTV D +R++FPV+ RL V YGEV Sbjct: 17 IQELFSGYLPPDVEVVLIDRMPYQGLKTEYYALAAGTVADTAVRVKFPVYDRLHVVYGEV 76 Query: 71 GSIDLESRMIFLKTGEPMSYDILAIALGCTDNYHNVPGAEEHTCSIQSFSSTRETYRRLN 130 SIDLE +++ L +P+ YD LAIALGCTD YH VPGAEE T S+QSF+++RETY LN Sbjct: 77 LSIDLEKKLVNLTNNDPVEYDQLAIALGCTDRYHGVPGAEEFTFSLQSFAASRETYLNLN 136 Query: 131 DVRPYGTVNIVGGGLSGVEIAAELRESRPDLNISILDRGERVLSSFPAKLSQYVEEWFSE 190 ++RPYG V+I+GGGLSG+E+AA+LRESRPDLNI+ILDRG+RVLSSFP +LS Y+ WF E Sbjct: 137 NLRPYGQVHIIGGGLSGIELAADLRESRPDLNIAILDRGQRVLSSFPNRLSAYIHRWFEE 196 Query: 191 HHVETLGHISVSHVEKDAIFNGTQAIPGDVTVWTAGIQPVEVVQQLELPKDRGGRIIVEP 250 HHV+ +SVS VEKDA++N I D+ VWTAGIQPV+VVQ L+LPKDR GRI++ Sbjct: 197 HHVDIHSGVSVSRVEKDAVYNLDVPIATDLAVWTAGIQPVKVVQDLDLPKDRSGRILLNE 256 Query: 251 YYNVADYPEVYVIGDCASLPFAPSXXXXXXXXXXXXXIMQALWRDETPKLHKIKLKGTLG 310 +Y V +PEVYVIGDCASLPF PS +M+ALWRD+TPK+ +KLKGTLG Sbjct: 257 WYQVPSHPEVYVIGDCASLPFVPSAQAAGAQAEQVGHVMKALWRDDTPKVSPLKLKGTLG 316 Query: 311 SLGKNAGFGLMGRRSVMGRVPRLLKSGVLWMSKRHF 346 SLGK+AGFGLMG SVMGRVPR+LKSGVLW SKRH+ Sbjct: 317 SLGKHAGFGLMGSTSVMGRVPRILKSGVLWKSKRHY 352 >B1DJ22.1 B1DJ22_9BACL FAD-dependent pyridine nucleotide-disulphide oxidoreductase Length = 355 Score = 442 bits (1137), Expect = e-122, Method: Compositional matrix adjust. Identities = 201/349 (57%), Positives = 265/349 (75%), Gaps = 2/349 (0%) Query: 1 LGGGYGGLALIQKLLDNHLPHDVEIVLVDRMPYQGIKTEYYALAAGTVTDYHLRIQFPVH 60 LGGGYGG A+ +++ LP DVE++LVDRMPYQG+KTEYYALAAGTV+D +R++FP Sbjct: 7 LGGGYGGQAIAADVIEKQLPIDVEVILVDRMPYQGLKTEYYALAAGTVSDLEIRVKFPQD 66 Query: 61 PRLTVRYGEVGSIDLESRMIFLKTGEPMSYDILAIALGCTDNYHNVPGAEEHTCSIQSFS 120 PRLT RYGEV ID++ ++++L+ +P+ Y+ L I LGCTDNYH + GAEE + SIQ+ S Sbjct: 67 PRLTTRYGEVVDIDMDKKLVYLEGQDPIDYEWLVIGLGCTDNYHGIEGAEEFSNSIQTLS 126 Query: 121 STRETYRRLNDVRPYGTVNIVGGGLSGVEIAAELRESRPDLNISILDRGERVLSSFPAKL 180 + R+TY+ LNDV+PYG V+I+GGGLSGVE+AAELRE+R DLNI I+DRG V+S+FP L Sbjct: 127 NARKTYQMLNDVKPYGQVSIIGGGLSGVEVAAELREARSDLNIRIIDRGPSVMSAFPGSL 186 Query: 181 SQYVEEWFSEHHVETLGHISVSHVEKDAIF--NGTQAIPGDVTVWTAGIQPVEVVQQLEL 238 ++V WF EH VE L HIS+ +E+ A+ N Q I DVTVWTAGIQP+E+VQ++ L Sbjct: 187 QKFVASWFKEHEVEMLSHISLCRLEQGALHDANANQTILTDVTVWTAGIQPIEIVQRMNL 246 Query: 239 PKDRGGRIIVEPYYNVADYPEVYVIGDCASLPFAPSXXXXXXXXXXXXXIMQALWRDETP 298 PKD+ GR+I+ Y+ + DY +V+V GDCASLPF+PS + A+W ++TP Sbjct: 247 PKDKQGRLIINEYHQLPDYTDVFVCGDCASLPFSPSGQAAGAQGKQIAEAIHAIWNNKTP 306 Query: 299 KLHKIKLKGTLGSLGKNAGFGLMGRRSVMGRVPRLLKSGVLWMSKRHFG 347 KL KIKLKG +GSLGK +GFGLMG +MG++PRL+KSG+LW SKRHFG Sbjct: 307 KLGKIKLKGVMGSLGKKSGFGLMGSTPMMGKIPRLIKSGILWKSKRHFG 355 >Q5WDT9.1 Q5WDT9_BACSK NADH dehydrogenase EC=1.6.99.3 Length = 544 Score = 396 bits (1018), Expect = e-108, Method: Compositional matrix adjust. Identities = 190/349 (54%), Positives = 247/349 (70%), Gaps = 2/349 (0%) Query: 1 LGGGYGGLALIQKLLDNHLPHDVEIVLVDRMPYQGIKTEYYALAAGTVTDYHLRIQFPVH 60 LG GYGG+ L+Q+LL N LP D EI+LVD++PY +KTEYYALAAGT +D+HLR+ FP Sbjct: 196 LGAGYGGMRLLQRLLPNDLPKDWEIILVDQLPYHCLKTEYYALAAGTASDHHLRVSFPED 255 Query: 61 PRLTVRYGEVGSIDLESRMIFLKTGEPMSYDILAIALGCTDNYHNVPGAEEHTCSIQSFS 120 RL ++Y V +I L I L GE + +D L I LGCTDN+H VPGA+++T SIQ+ Sbjct: 256 ERLRIKYATVTAIHLHDSTIDLDNGESIPFDKLVIGLGCTDNFHGVPGADQYTYSIQTMG 315 Query: 121 STRETYRRLNDVRPYGTVNIVGGGLSGVEIAAELRESRPDLNISILDRGERVLSSFPAKL 180 +TR TY LN+VRP G V+IVGGGLSGVE+A+ELRESRPDL I + DRG+ +LS FP KL Sbjct: 316 ATRRTYEALNNVRPEGVVSIVGGGLSGVELASELRESRPDLTIRLFDRGDYILSMFPKKL 375 Query: 181 SQYVEEWFSEHHVETLGHISVSHVEKDAIFNGTQAIPGDVTVWTAGIQPVEVVQQLELPK 240 S YV+ WF EH V+ + +++ VE AI+N + I D +WTAG+QPV+VV+ L++ K Sbjct: 376 STYVQNWFVEHGVDVSNNSNITKVEPGAIYNHDERIATDAVIWTAGVQPVDVVRALDVEK 435 Query: 241 DRGGRIIVEPYYNVADYPEVYVIGDCASLPFAPSXXXXXXXXXXXXXIMQALWRDET--P 298 DR GRI++ P + + D+P+V+V+GDCASLP APS I++ W+ E Sbjct: 436 DRSGRIVLTPQHFIPDHPDVFVVGDCASLPHAPSAQLAESQAEQIVTILKHQWKGEALPE 495 Query: 299 KLHKIKLKGTLGSLGKNAGFGLMGRRSVMGRVPRLLKSGVLWMSKRHFG 347 L +IKLKG LGSLGK GFG+MG R + GRVPR+LKSGVLWM K H G Sbjct: 496 TLPRIKLKGVLGSLGKKHGFGMMGERPLTGRVPRILKSGVLWMYKYHSG 544 >Q9K7E7.1 Q9K7E7_BACHD NADH dehydrogenase Length = 546 Score = 392 bits (1006), Expect = e-107, Method: Compositional matrix adjust. Identities = 185/342 (54%), Positives = 245/342 (71%), Gaps = 2/342 (0%) Query: 8 LALIQKLLDNHLPHDVEIVLVDRMPYQGIKTEYYALAAGTVTDYHLRIQFPVHPRLTVRY 67 + ++Q+LL N LP D EI LVDR+PY +KTEYYALAAGT +D+HLR+ FP PRL+ RY Sbjct: 205 MRILQRLLPNDLPSDWEITLVDRLPYHCLKTEYYALAAGTASDHHLRVSFPEDPRLSTRY 264 Query: 68 GEVGSIDLESRMIFLKTGEPMSYDILAIALGCTDNYHNVPGAEEHTCSIQSFSSTRETYR 127 G V SIDL S+ + + GEP++YD L I LGC D YH VPGA+EHT SIQS +TR TY Sbjct: 265 GSVSSIDLASKTVLFEEGEPLTYDTLIIGLGCEDKYHGVPGAKEHTYSIQSMEATRRTYE 324 Query: 128 RLNDVRPYGTVNIVGGGLSGVEIAAELRESRPDLNISILDRGERVLSSFPAKLSQYVEEW 187 LN+VRP G V IVG GLSGVE+A+ELRESRPDL I +LDRG+ +LS FP +LS YV+ W Sbjct: 325 ALNNVRPEGVVTIVGAGLSGVELASELRESRPDLTIKLLDRGDIILSMFPRRLSNYVQNW 384 Query: 188 FSEHHVETLGHISVSHVEKDAIFNGTQAIPGDVTVWTAGIQPVEVVQQLELPKDRGGRII 247 F +H V+ + +V+ VE+ A++N + I D +WTAGIQP VV+ L++ KD+ GR++ Sbjct: 385 FIDHGVDIINKSNVTKVEEGAVYNHDERIESDAIIWTAGIQPNVVVRNLDVEKDQQGRVV 444 Query: 248 VEPYYNVADYPEVYVIGDCASLPFAPSXXXXXXXXXXXXXIMQALWRDET--PKLHKIKL 305 + P++++ +V+V+GDCASLP APS +++ W +E+ + +IKL Sbjct: 445 LTPHHHLPTDEDVFVVGDCASLPHAPSAQLAEGQAEQIVTVLKKRWNNESLPDEFPRIKL 504 Query: 306 KGTLGSLGKNAGFGLMGRRSVMGRVPRLLKSGVLWMSKRHFG 347 KG LGSLGK GFGLMG R+++GRVPR+LKSGVLWM K H G Sbjct: 505 KGVLGSLGKKHGFGLMGERTLIGRVPRVLKSGVLWMYKYHSG 546 >A4ISF0.1 A4ISF0_GEOTN Pyridine nucleotide-disulphide oxidoreductase Length = 356 Score = 385 bits (988), Expect = e-105, Method: Compositional matrix adjust. Identities = 185/349 (53%), Positives = 242/349 (69%), Gaps = 2/349 (0%) Query: 1 LGGGYGGLALIQKLLDNHLPHDVEIVLVDRMPYQGIKTEYYALAAGTVTDYHLRIQFPVH 60 LGGGYG + ++Q+LL + +P+D+ I+L+DR+PY +KTEYYALAAGT++D+H+R+ FP H Sbjct: 7 LGGGYGNMRILQRLLPDGVPNDIHIILIDRVPYHCLKTEYYALAAGTISDHHIRVPFPEH 66 Query: 61 PRLTVRYGEVGSIDLESRMIFLKTGEPMSYDILAIALGCTDNYHNVPGAEEHTCSIQSFS 120 +LT ++GEV SIDL+ +++ LK G + YD L I LGC D YH VPGAE +T SIQS Sbjct: 67 SQLTYQFGEVVSIDLDKQLVHLKDGNSIRYDELVIGLGCEDKYHGVPGAEAYTYSIQSID 126 Query: 121 STRETYRRLNDVRPYGTVNIVGGGLSGVEIAAELRESRPDLNISILDRGERVLSSFPAKL 180 R Y LN++ P TV IVG GLSGVE+A+EL ESRPDL++ + DRGER+L FP +L Sbjct: 127 KARAAYEALNNLPPKATVGIVGAGLSGVELASELAESRPDLHVKLFDRGERILPMFPKRL 186 Query: 181 SQYVEEWFSEHHVETLGHISVSHVEKDAIFNGTQAIPGDVTVWTAGIQPVEVVQQLELPK 240 S YVE WF EHHVE + H +V+ VE ++N + +P DV VWTAGIQP VV++L + K Sbjct: 187 SDYVERWFVEHHVEIVRHSNVTKVEPGVLYNHDEPVPCDVIVWTAGIQPNRVVRELNVEK 246 Query: 241 DRGGRIIVEPYYNVADYPEVYVIGDCASLPFAPSXXXXXXXXXXXXXIMQALWRDETP-- 298 D+ GR+++ + + Y VYV+GDCASLP +PS +MQ W E P Sbjct: 247 DKQGRVVLTKQHYIPGYENVYVVGDCASLPHSPSAQLAEAQAEQIVQVMQKRWNGEEPPS 306 Query: 299 KLHKIKLKGTLGSLGKNAGFGLMGRRSVMGRVPRLLKSGVLWMSKRHFG 347 + IKLKG LGSLGK GFGL+ R + GRVPRLLKSGVLWM K H G Sbjct: 307 EFPPIKLKGILGSLGKKHGFGLVADRPLTGRVPRLLKSGVLWMYKYHNG 355 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.139 0.420 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,145,229,149 Number of extensions: 87979170 Number of successful extensions: 226224 Number of sequences better than 1.0e-05: 2399 Number of HSP's gapped: 222390 Number of HSP's successfully gapped: 2428 Length of query: 347 Length of database: 3,060,696,203 Length adjustment: 136 Effective length of query: 211 Effective length of database: 1,779,438,163 Effective search space: 375461452393 Effective search space used: 375461452393 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)