BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0109.0019.p
         (84 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

A8W0K6.1 A8W0K6_9BACI UDP-N-acetylmuramoylalanine--D-glutamate l...    68   2e-10
B4AG11.1 B4AG11_BACPU Conserved domain protein                         66   8e-10
A8FH17.1 Y2879_BACP2 UPF0349 protein BPUM_2879                         66   8e-10
C0ZKS4.1 C0ZKS4_BREBN Putative uncharacterized protein yuzB            66   1e-09
Q5WDU0.1 Y2936_BACSK UPF0349 protein ABC2936                           65   1e-09

>A8W0K6.1 A8W0K6_9BACI UDP-N-acetylmuramoylalanine--D-glutamate ligase
          Length = 78

 Score = 68.2 bits (165), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 28/53 (52%), Positives = 40/53 (75%)

Query: 1  MRPLIEFCASNIGHGTEPLKRKLELNPEYDVIEYGCLNNCGQCYLQPFAMLDG 53
          M+P++EFC SN+  GT P+  +LE +P+ DVIEYGCL+ CGQC    FA+++G
Sbjct: 1  MKPIVEFCMSNLASGTHPVFAELEKDPDLDVIEYGCLSFCGQCARTKFALVNG 53


>B4AG11.1 B4AG11_BACPU Conserved domain protein
          Length = 78

 Score = 66.2 bits (160), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 28/53 (52%), Positives = 39/53 (73%)

Query: 1  MRPLIEFCASNIGHGTEPLKRKLELNPEYDVIEYGCLNNCGQCYLQPFAMLDG 53
          M PLIEFC SN+  G++  K KL+ +P  DV+EYGCL+ CG+C   PFA+++G
Sbjct: 1  MFPLIEFCVSNLAQGSQEAKEKLDKDPNLDVMEYGCLSYCGKCMDSPFALVNG 53


>A8FH17.1 Y2879_BACP2 UPF0349 protein BPUM_2879
          Length = 78

 Score = 66.2 bits (160), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 28/53 (52%), Positives = 39/53 (73%)

Query: 1  MRPLIEFCASNIGHGTEPLKRKLELNPEYDVIEYGCLNNCGQCYLQPFAMLDG 53
          M PLIEFC SN+  G++  K KL+ +P  DV+EYGCL+ CG+C   PFA+++G
Sbjct: 1  MFPLIEFCVSNLAQGSQEAKEKLDKDPNLDVMEYGCLSYCGKCMDSPFALVNG 53


>C0ZKS4.1 C0ZKS4_BREBN Putative uncharacterized protein yuzB
          Length = 87

 Score = 65.9 bits (159), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 28/55 (50%), Positives = 42/55 (76%), Gaps = 2/55 (3%)

Query: 1  MRPLIEFCASNIGHGTEPLKRKLELNPE--YDVIEYGCLNNCGQCYLQPFAMLDG 53
          M+PL+EFCASN+   T+ +   LE +P+   DV+EYGCL  CG+CY++PFA+++G
Sbjct: 1  MKPLVEFCASNVSSYTQSVVDALENDPDLDVDVLEYGCLGYCGECYMEPFALVNG 55


>Q5WDU0.1 Y2936_BACSK UPF0349 protein ABC2936
          Length = 78

 Score = 65.5 bits (158), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 28/53 (52%), Positives = 38/53 (71%)

Query: 1  MRPLIEFCASNIGHGTEPLKRKLELNPEYDVIEYGCLNNCGQCYLQPFAMLDG 53
          MRP+IEFC SN+  G+     +LE +P  D+IEYGCLN+CG C L  FA+++G
Sbjct: 1  MRPIIEFCLSNLASGSHDAMEELEKDPNLDIIEYGCLNHCGTCALDHFALVNG 53


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.322    0.145    0.483 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 374,631,987
Number of extensions: 10252327
Number of successful extensions: 16102
Number of sequences better than 1.0e-05: 123
Number of HSP's gapped: 16104
Number of HSP's successfully gapped: 123
Length of query: 84
Length of database: 3,060,696,203
Length adjustment: 54
Effective length of query: 30
Effective length of database: 2,551,961,393
Effective search space: 76558841790
Effective search space used: 76558841790
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 126 (53.1 bits)