BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0109.0018.p
         (82 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KKM8.1 B3KKM8_9BACI Nitrogen-fixing NifU domain protein             130   4e-29
B1DJ23.1 B1DJ23_9BACL Nitrogen-fixing NifU domain protein             120   3e-26
A7GUF0.1 A7GUF0_BACCN Nitrogen-fixing NifU domain protein             114   4e-24
Q9K7E5.1 Q9K7E5_BACHD Nitrogen fixation protein (NifU protein)        112   9e-24
C3BRV1.1 C3BRV1_9BACI Putative uncharacterized protein                112   1e-23

>B3KKM8.1 B3KKM8_9BACI Nitrogen-fixing NifU domain protein
          Length = 81

 Score =  130 bits (327), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 66/82 (80%), Positives = 70/82 (85%), Gaps = 1/82 (1%)

Query: 1  MSENLQSTTMYDEVLEVLDKLRPFLQRDGGDVELIDVEDGIVKLKLMGACGSCPSSTITL 60
          MSEN Q TT+YDEV EVLDKLRPFLQRDGGDVEL+DVEDGIVKLKLMGACGSCPSSTITL
Sbjct: 1  MSENTQ-TTVYDEVAEVLDKLRPFLQRDGGDVELVDVEDGIVKLKLMGACGSCPSSTITL 59

Query: 61 KAGIERALLXXXXXXXXXIQVF 82
          KAGIERAL+         +QVF
Sbjct: 60 KAGIERALVEEVEGIQEVVQVF 81


>B1DJ23.1 B1DJ23_9BACL Nitrogen-fixing NifU domain protein
          Length = 80

 Score =  120 bits (302), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 58/61 (95%), Positives = 61/61 (100%)

Query: 9  TMYDEVLEVLDKLRPFLQRDGGDVELIDVEDGIVKLKLMGACGSCPSSTITLKAGIERAL 68
          TMYDEVL+VLDKLRPFLQRDGGDVEL+DVEDGIVKL+LMGACGSCPSSTITLKAGIERAL
Sbjct: 7  TMYDEVLDVLDKLRPFLQRDGGDVELVDVEDGIVKLRLMGACGSCPSSTITLKAGIERAL 66

Query: 69 L 69
          L
Sbjct: 67 L 67


>A7GUF0.1 A7GUF0_BACCN Nitrogen-fixing NifU domain protein
          Length = 78

 Score =  114 bits (284), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 56/78 (71%), Positives = 64/78 (82%)

Query: 5  LQSTTMYDEVLEVLDKLRPFLQRDGGDVELIDVEDGIVKLKLMGACGSCPSSTITLKAGI 64
          +++  M ++VLEVLDKLRPFL RDGGDVEL+D+EDGIVKL+LMGACGSCPSSTITLKAGI
Sbjct: 1  MENPNMQEQVLEVLDKLRPFLLRDGGDVELVDIEDGIVKLRLMGACGSCPSSTITLKAGI 60

Query: 65 ERALLXXXXXXXXXIQVF 82
          ERALL          QVF
Sbjct: 61 ERALLEEVPGVIEVEQVF 78


>Q9K7E5.1 Q9K7E5_BACHD Nitrogen fixation protein (NifU protein)
          Length = 79

 Score =  112 bits (281), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 56/76 (73%), Positives = 63/76 (82%)

Query: 7  STTMYDEVLEVLDKLRPFLQRDGGDVELIDVEDGIVKLKLMGACGSCPSSTITLKAGIER 66
          ST M+++V EVLDKLRPFL RDGGDVEL+DVEDGIVK++L+GACGSCPSSTITLKAGIER
Sbjct: 4  STEMHEQVKEVLDKLRPFLLRDGGDVELVDVEDGIVKVRLLGACGSCPSSTITLKAGIER 63

Query: 67 ALLXXXXXXXXXIQVF 82
          ALL          QVF
Sbjct: 64 ALLEEVPGVKEIEQVF 79


>C3BRV1.1 C3BRV1_9BACI Putative uncharacterized protein
          Length = 78

 Score =  112 bits (280), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 55/78 (70%), Positives = 64/78 (82%)

Query: 5  LQSTTMYDEVLEVLDKLRPFLQRDGGDVELIDVEDGIVKLKLMGACGSCPSSTITLKAGI 64
          +++  M ++VLEVLDKLRPFL RDGGDVEL+D+E+GIVKL+LMGACGSCPSSTITLKAGI
Sbjct: 1  MENPNMQEQVLEVLDKLRPFLLRDGGDVELVDIEEGIVKLRLMGACGSCPSSTITLKAGI 60

Query: 65 ERALLXXXXXXXXXIQVF 82
          ERALL          QVF
Sbjct: 61 ERALLEEVPGVIEVEQVF 78


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.320    0.139    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 371,955,353
Number of extensions: 11664797
Number of successful extensions: 38929
Number of sequences better than 1.0e-05: 815
Number of HSP's gapped: 38870
Number of HSP's successfully gapped: 815
Length of query: 82
Length of database: 3,060,696,203
Length adjustment: 52
Effective length of query: 30
Effective length of database: 2,570,803,423
Effective search space: 77124102690
Effective search space used: 77124102690
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 126 (53.1 bits)