BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0109.0017.p (298 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C0ZJY9.1 C0ZJY9_BREBN Methionine ABC transporter substrate bindi... 347 1e-93 B1DJA2.1 B1DJA2_9BACL Lipoprotein, YaeC family 345 4e-93 B3KKN0.1 B3KKN0_9BACI Lipoprotein, YaeC family 344 6e-93 Q1IGZ2.1 Q1IGZ2_PSEE4 Putative D-methionine-binding lipoprotein ... 339 2e-91 Q02DK4.1 Q02DK4_PSEAB Putative ABC transporter, periplasmic bind... 338 5e-91 >C0ZJY9.1 C0ZJY9_BREBN Methionine ABC transporter substrate binding protein Length = 279 Score = 347 bits (889), Expect = 1e-93, Method: Compositional matrix adjust. Identities = 171/238 (71%), Positives = 194/238 (81%) Query: 61 VTLVVGASPKPHAEILKAIAPLLEKQGIKLEIKEFTDYILPNTQLAEKELDANFFQHKPY 120 VTL VGASP PHA ILK I P L++QG+ L ++EFTDY+ PN Q+ EK+LDANFFQHKPY Sbjct: 42 VTLKVGASPVPHAAILKFIQPKLKEQGVNLVVQEFTDYVQPNVQVNEKQLDANFFQHKPY 101 Query: 121 LDDQNKQNGTSLVSVTAVHVEPFGAYSKKIKSIDELADGAKVAIPNDATNGGRALILLAK 180 L+D NK +LV V AVH+EPFGAYSKKIKS+DEL DGA +A+PND TN GRAL LL K Sbjct: 102 LEDFNKGQNMNLVPVVAVHIEPFGAYSKKIKSVDELVDGATIALPNDPTNSGRALALLEK 161 Query: 181 NGLIKLKDDTNITSTTADITENPKNLKIVELEAAMLPRQLDEVDLALINTNYALEAKLVP 240 NGLIKLK+ I+ T D+ EN KNLK E+EAAMLPR L+EVDLALINTNYALEAKLVP Sbjct: 162 NGLIKLKEGAGISGTVKDVVENKKNLKFKEVEAAMLPRVLEEVDLALINTNYALEAKLVP 221 Query: 241 TKDALFIEGTDSPYANLLVARPDNKDSDAIQKLAAALTSPEAKAFIEKEYQGSIIPAF 298 TKDALFIE D+PYAN LVARPDNKDS+AIQKLA L SPE K FIE EY+G+IIPAF Sbjct: 222 TKDALFIEDKDTPYANFLVARPDNKDSEAIQKLAKELNSPEVKKFIEDEYKGAIIPAF 279 >B1DJA2.1 B1DJA2_9BACL Lipoprotein, YaeC family Length = 282 Score = 345 bits (884), Expect = 4e-93, Method: Compositional matrix adjust. Identities = 170/238 (71%), Positives = 193/238 (81%) Query: 61 VTLVVGASPKPHAEILKAIAPLLEKQGIKLEIKEFTDYILPNTQLAEKELDANFFQHKPY 120 VTL VGA+P PHAEIL I P L++QGI LE+ EF DY+ PNT+L EKELDANFFQH PY Sbjct: 44 VTLKVGATPVPHAEILNFIKPALKEQGINLEVVEFNDYVQPNTRLYEKELDANFFQHTPY 103 Query: 121 LDDQNKQNGTSLVSVTAVHVEPFGAYSKKIKSIDELADGAKVAIPNDATNGGRALILLAK 180 LD NK G LVSV VH+EP GAYSKKIKS DEL DGAKV IPND TNGGRAL LLA Sbjct: 104 LDQFNKDKGYDLVSVAGVHIEPMGAYSKKIKSADELKDGAKVVIPNDPTNGGRALQLLAA 163 Query: 181 NGLIKLKDDTNITSTTADITENPKNLKIVELEAAMLPRQLDEVDLALINTNYALEAKLVP 240 N +IKLKD + +T DITENPKNLKI E+EAA LPR L EVDLALIN+N+ALEA LVP Sbjct: 164 NNVIKLKDGVGVAATVHDITENPKNLKITEVEAATLPRVLGEVDLALINSNFALEADLVP 223 Query: 241 TKDALFIEGTDSPYANLLVARPDNKDSDAIQKLAAALTSPEAKAFIEKEYQGSIIPAF 298 +KDA+FIEG+DSPY N+LVARPDNKDSDA++KLAAAL SP+ K FIE +Y G+I+PAF Sbjct: 224 SKDAIFIEGSDSPYVNILVARPDNKDSDAMKKLAAALQSPDVKKFIEDKYAGAIVPAF 281 >B3KKN0.1 B3KKN0_9BACI Lipoprotein, YaeC family Length = 280 Score = 344 bits (882), Expect = 6e-93, Method: Compositional matrix adjust. Identities = 170/240 (70%), Positives = 198/240 (82%) Query: 59 EPVTLVVGASPKPHAEILKAIAPLLEKQGIKLEIKEFTDYILPNTQLAEKELDANFFQHK 118 E VTL VGASP PHA+IL+ I P LEK+G+ LEI EFTDY+LPNTQ+ KE+DANFFQHK Sbjct: 41 ETVTLKVGASPSPHAKILEHIKPALEKEGVNLEIVEFTDYVLPNTQVDSKEIDANFFQHK 100 Query: 119 PYLDDQNKQNGTSLVSVTAVHVEPFGAYSKKIKSIDELADGAKVAIPNDATNGGRALILL 178 PYLD++ K+ L SV AVHVEP GAYSK I S+DEL DGA VAIPND +N GRAL LL Sbjct: 101 PYLDNEIKERKLDLESVIAVHVEPLGAYSKTITSVDELKDGAVVAIPNDPSNAGRALTLL 160 Query: 179 AKNGLIKLKDDTNITSTTADITENPKNLKIVELEAAMLPRQLDEVDLALINTNYALEAKL 238 +KNG+IKL D++ + +T DI ENPKNL+ E+EAAMLPR LDE+DLA+INTNYALEA L Sbjct: 161 SKNGVIKLNDESKLEATAKDIVENPKNLEFKEVEAAMLPRMLDELDLAVINTNYALEAGL 220 Query: 239 VPTKDALFIEGTDSPYANLLVARPDNKDSDAIQKLAAALTSPEAKAFIEKEYQGSIIPAF 298 PTKDALFIE D+PYANLLVARPDNKDSDAIQKLA ALTS + K FIE+EY+G++IPAF Sbjct: 221 DPTKDALFIEDKDNPYANLLVARPDNKDSDAIQKLAKALTSEDVKTFIEEEYKGAVIPAF 280 >Q1IGZ2.1 Q1IGZ2_PSEE4 Putative D-methionine-binding lipoprotein MetQ Length = 256 Score = 339 bits (870), Expect = 2e-91, Method: Compositional matrix adjust. Identities = 167/237 (70%), Positives = 195/237 (82%) Query: 62 TLVVGASPKPHAEILKAIAPLLEKQGIKLEIKEFTDYILPNTQLAEKELDANFFQHKPYL 121 TL V A+P PHAEILK + P L K+G++L++KEFTDYI PN Q+AEK LDANFFQH+PYL Sbjct: 20 TLTVAATPVPHAEILKFVQPQLAKEGVELKVKEFTDYIQPNVQVAEKRLDANFFQHQPYL 79 Query: 122 DDQNKQNGTSLVSVTAVHVEPFGAYSKKIKSIDELADGAKVAIPNDATNGGRALILLAKN 181 D+ NK GT LVSVT VH+EP GAYS K+K +DELADGA V IPNDATNGGRAL+LL K Sbjct: 80 DEFNKAKGTQLVSVTGVHLEPLGAYSTKLKKLDELADGATVVIPNDATNGGRALLLLDKA 139 Query: 182 GLIKLKDDTNITSTTADITENPKNLKIVELEAAMLPRQLDEVDLALINTNYALEAKLVPT 241 G+IKLKD+ NI ST DIT N K LK ELEAA +PR L +VDLALINTNYALEAKL P Sbjct: 140 GVIKLKDNKNILSTVKDITGNDKKLKFRELEAATIPRVLTQVDLALINTNYALEAKLNPE 199 Query: 242 KDALFIEGTDSPYANLLVARPDNKDSDAIQKLAAALTSPEAKAFIEKEYQGSIIPAF 298 KDAL IEG+DSPY N+LVARPDNKD+DA++KLAAAL SPE K FI ++Y+G++IPAF Sbjct: 200 KDALVIEGSDSPYVNILVARPDNKDADAMKKLAAALHSPEVKQFITEKYKGAVIPAF 256 >Q02DK4.1 Q02DK4_PSEAB Putative ABC transporter, periplasmic binding protein Length = 260 Score = 338 bits (866), Expect = 5e-91, Method: Compositional matrix adjust. Identities = 162/237 (68%), Positives = 195/237 (82%) Query: 62 TLVVGASPKPHAEILKAIAPLLEKQGIKLEIKEFTDYILPNTQLAEKELDANFFQHKPYL 121 TL V A+P PHAEIL + PLL K+G++L +KEFTDY+ PN Q++EK LDANFFQH+PYL Sbjct: 24 TLTVAATPVPHAEILNVVKPLLAKEGVELMVKEFTDYVQPNVQVSEKRLDANFFQHQPYL 83 Query: 122 DDQNKQNGTSLVSVTAVHVEPFGAYSKKIKSIDELADGAKVAIPNDATNGGRALILLAKN 181 D+ NK GT LV+VT VH+EP GAYS K K +DEL GA V IPNDATNGGRAL+LL K Sbjct: 84 DEFNKAKGTDLVAVTGVHIEPLGAYSSKYKKLDELPSGATVVIPNDATNGGRALLLLDKA 143 Query: 182 GLIKLKDDTNITSTTADITENPKNLKIVELEAAMLPRQLDEVDLALINTNYALEAKLVPT 241 G+IKLKD+ +IT+T DI +NPKN+KI ELEAA LPR L +VD+ALINTNYALEAKL PT Sbjct: 144 GVIKLKDNKSITATPKDIVDNPKNIKIRELEAATLPRVLTQVDMALINTNYALEAKLNPT 203 Query: 242 KDALFIEGTDSPYANLLVARPDNKDSDAIQKLAAALTSPEAKAFIEKEYQGSIIPAF 298 KDAL IEG+DSPY N+LVARPDNKDSDA+QKLA AL S E K FI+++Y+G+++PAF Sbjct: 204 KDALAIEGSDSPYVNILVARPDNKDSDAMQKLAKALHSAEVKQFIQEKYKGAVVPAF 260 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.311 0.130 0.354 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,505,554,573 Number of extensions: 60186619 Number of successful extensions: 167426 Number of sequences better than 1.0e-05: 1951 Number of HSP's gapped: 165308 Number of HSP's successfully gapped: 1953 Length of query: 298 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 163 Effective length of database: 1,788,859,178 Effective search space: 291584046014 Effective search space used: 291584046014 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 131 (55.1 bits)