BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0109.0016.p (222 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KKN1.1 B3KKN1_9BACI Binding-protein-dependent transport system... 312 1e-83 C0ZJY8.1 C0ZJY8_BREBN Methionine ABC transporter permease protein 268 2e-70 B1DJA3.1 B1DJA3_9BACL Binding-protein-dependent transport system... 238 2e-61 Q9HT69.1 Q9HT69_PSEAE Probable permease of ABC transporter 221 5e-56 Q02DK5.1 Q02DK5_PSEAB Putative permease of ABC transporter 221 5e-56 >B3KKN1.1 B3KKN1_9BACI Binding-protein-dependent transport systems inner membrane component Length = 222 Score = 312 bits (800), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 154/222 (69%), Positives = 187/222 (84%) Query: 1 MGGLNFNEINWEEMLDAGIATLRMLAYSGIFTIILGLPLGIVLYLWGRSNHFIIRSIYSV 60 M GL+F +I+W+E+ A + TLRML S +F+ I+GLP+G++LY+ RS ++R Y++ Sbjct: 1 MFGLDFTQIDWKEIWTATLDTLRMLGASALFSFIIGLPVGVLLYMAARSTSGLVRFGYTI 60 Query: 61 LSFVVNILRSVPFIILMVALIPLSKSIMGTSIGVLGTIPALVIGAAPFFARLVETALREV 120 LSF+VNILRSVPFIIL+VA+IP++KSI+G S GVLGTIP LVIGAAPFFARLVETAL EV Sbjct: 61 LSFIVNILRSVPFIILIVAMIPITKSIVGVSYGVLGTIPPLVIGAAPFFARLVETALNEV 120 Query: 121 DRGVIEAAQGMGASTGQIVWRVLLPEARPGLLAGVTITIVTLVSYTAMSXXXXXXXXXDL 180 D+GVIEAA MG+ST QIVWRVLLPEARPGLLAG+TITIVTLVSYTAMS DL Sbjct: 121 DKGVIEAAHAMGSSTSQIVWRVLLPEARPGLLAGMTITIVTLVSYTAMSGQVGGGGLGDL 180 Query: 181 AIRYGYYRYEKEVMIISVALMVILVQLLQMAGDRLVQHFTRK 222 AI+YGYYRYE E+MI++V LM++LVQLLQMAGDRLV+HFTRK Sbjct: 181 AIKYGYYRYETEIMILAVVLMIVLVQLLQMAGDRLVRHFTRK 222 >C0ZJY8.1 C0ZJY8_BREBN Methionine ABC transporter permease protein Length = 221 Score = 268 bits (686), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 130/218 (59%), Positives = 170/218 (77%) Query: 5 NFNEINWEEMLDAGIATLRMLAYSGIFTIILGLPLGIVLYLWGRSNHFIIRSIYSVLSFV 64 F ++W E+ + + TL ML +S +FT+++GLPLGI+L+L R R+ Y++ SFV Sbjct: 4 TFENVDWAEIGEGTMDTLTMLGFSTLFTVLIGLPLGIILFLTSRGQLLQNRTFYTIASFV 63 Query: 65 VNILRSVPFIILMVALIPLSKSIMGTSIGVLGTIPALVIGAAPFFARLVETALREVDRGV 124 VN+LRSVPFIILM+ LIP++K I+GTS+GVLG IP LV GAAPFFARLVET+LRE+D+GV Sbjct: 64 VNVLRSVPFIILMILLIPVTKMIVGTSLGVLGAIPPLVFGAAPFFARLVETSLREIDKGV 123 Query: 125 IEAAQGMGASTGQIVWRVLLPEARPGLLAGVTITIVTLVSYTAMSXXXXXXXXXDLAIRY 184 IEAAQ MGAS QIVW VLLPE+R GL+AG+TIT VTLVSYTAMS DLAIRY Sbjct: 124 IEAAQSMGASNWQIVWNVLLPESRSGLIAGITITTVTLVSYTAMSGVIGGGGLGDLAIRY 183 Query: 185 GYYRYEKEVMIISVALMVILVQLLQMAGDRLVQHFTRK 222 GY R++ +VM+++V +++++VQ+LQ GDRLV F+RK Sbjct: 184 GYQRFQTDVMVVTVVILLVMVQILQSLGDRLVLKFSRK 221 >B1DJA3.1 B1DJA3_9BACL Binding-protein-dependent transport systems inner membrane component Length = 225 Score = 238 bits (608), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 130/219 (59%), Positives = 169/219 (77%) Query: 4 LNFNEINWEEMLDAGIATLRMLAYSGIFTIILGLPLGIVLYLWGRSNHFIIRSIYSVLSF 63 ++++++ WE++ A TL M+ S IFT+ILGL +GI+L+L R +Y +LSF Sbjct: 7 IDWSQVRWEDIWPATKDTLTMIGASLIFTVILGLLIGIILFLTSRKQLLEQPIVYGLLSF 66 Query: 64 VVNILRSVPFIILMVALIPLSKSIMGTSIGVLGTIPALVIGAAPFFARLVETALREVDRG 123 VVNILRSVPF+ILM+ ++P++K + GT++GV GTIP LV+ AAPFFARLVET+LREVD+G Sbjct: 67 VVNILRSVPFVILMILIMPMTKILTGTTLGVQGTIPPLVVAAAPFFARLVETSLREVDKG 126 Query: 124 VIEAAQGMGASTGQIVWRVLLPEARPGLLAGVTITIVTLVSYTAMSXXXXXXXXXDLAIR 183 VIEAAQ MGAS IV RVLL EARPGLLAG+TIT VTLVSYTAM+ DLA+R Sbjct: 127 VIEAAQAMGASRWDIVRRVLLLEARPGLLAGITITAVTLVSYTAMAGVIGGGGLGDLALR 186 Query: 184 YGYYRYEKEVMIISVALMVILVQLLQMAGDRLVQHFTRK 222 YGY R++ VMI++VA+++ILVQLLQM GD LV+ F+RK Sbjct: 187 YGYQRFQLSVMIVTVAMLIILVQLLQMVGDHLVRRFSRK 225 >Q9HT69.1 Q9HT69_PSEAE Probable permease of ABC transporter Length = 225 Score = 221 bits (562), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 124/219 (56%), Positives = 169/219 (77%) Query: 4 LNFNEINWEEMLDAGIATLRMLAYSGIFTIILGLPLGIVLYLWGRSNHFIIRSIYSVLSF 63 ++F I+W E+ A + T ML S +FT++LGLPLG++L+L G F +++Y++LS Sbjct: 7 MSFANIDWYEIWLASVDTFWMLGGSLLFTVVLGLPLGVLLFLTGPRQMFEQKAVYTLLSL 66 Query: 64 VVNILRSVPFIILMVALIPLSKSIMGTSIGVLGTIPALVIGAAPFFARLVETALREVDRG 123 VVNILRS+PFIIL++ +IPL+ I GTS+GV G IP LV+GA PFFARLVETALREVD+G Sbjct: 67 VVNILRSLPFIILLIVMIPLTVLITGTSLGVAGAIPPLVVGATPFFARLVETALREVDKG 126 Query: 124 VIEAAQGMGASTGQIVWRVLLPEARPGLLAGVTITIVTLVSYTAMSXXXXXXXXXDLAIR 183 +IEA Q MGAST QI+W LLPEARPG++A +T+T +TLVSYTAM+ DLAIR Sbjct: 127 IIEATQAMGASTRQIIWNALLPEARPGIIAAITVTAITLVSYTAMAGVVGAGGLGDLAIR 186 Query: 184 YGYYRYEKEVMIISVALMVILVQLLQMAGDRLVQHFTRK 222 +GY R++ +VM+++V +++ILVQ+LQ GD+LV HF+RK Sbjct: 187 FGYQRFQTDVMVVTVVMLLILVQILQTVGDKLVVHFSRK 225 >Q02DK5.1 Q02DK5_PSEAB Putative permease of ABC transporter Length = 225 Score = 221 bits (562), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 124/219 (56%), Positives = 169/219 (77%) Query: 4 LNFNEINWEEMLDAGIATLRMLAYSGIFTIILGLPLGIVLYLWGRSNHFIIRSIYSVLSF 63 ++F I+W E+ A + T ML S +FT++LGLPLG++L+L G F +++Y++LS Sbjct: 7 MSFANIDWYEIWLASVDTFWMLGGSLLFTVVLGLPLGVLLFLTGPRQMFEQKAVYTLLSL 66 Query: 64 VVNILRSVPFIILMVALIPLSKSIMGTSIGVLGTIPALVIGAAPFFARLVETALREVDRG 123 VVNILRS+PFIIL++ +IPL+ I GTS+GV G IP LV+GA PFFARLVETALREVD+G Sbjct: 67 VVNILRSLPFIILLIVMIPLTVLITGTSLGVAGAIPPLVVGATPFFARLVETALREVDKG 126 Query: 124 VIEAAQGMGASTGQIVWRVLLPEARPGLLAGVTITIVTLVSYTAMSXXXXXXXXXDLAIR 183 +IEA Q MGAST QI+W LLPEARPG++A +T+T +TLVSYTAM+ DLAIR Sbjct: 127 IIEATQAMGASTRQIIWNALLPEARPGIIAAITVTAITLVSYTAMAGVVGAGGLGDLAIR 186 Query: 184 YGYYRYEKEVMIISVALMVILVQLLQMAGDRLVQHFTRK 222 +GY R++ +VM+++V +++ILVQ+LQ GD+LV HF+RK Sbjct: 187 FGYQRFQTDVMVVTVVMLLILVQILQTVGDKLVVHFSRK 225 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.329 0.143 0.414 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,162,701,893 Number of extensions: 43511673 Number of successful extensions: 255599 Number of sequences better than 1.0e-05: 3914 Number of HSP's gapped: 258867 Number of HSP's successfully gapped: 3920 Length of query: 222 Length of database: 3,060,696,203 Length adjustment: 131 Effective length of query: 91 Effective length of database: 1,826,543,238 Effective search space: 166215434658 Effective search space used: 166215434658 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 128 (53.9 bits)