BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0109.0015.p (338 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KKN2.1 B3KKN2_9BACI ABC transporter related 502 e-140 C0ZJY7.1 C0ZJY7_BREBN Methionine ABC transporter ATP-binding pro... 403 e-110 B1DJA4.1 B1DJA4_9BACL ABC transporter related 385 e-105 A1HMH5.1 A1HMH5_9FIRM ABC transporter related 354 7e-96 B0K2A4.1 B0K2A4_THEPX ABC transporter related 347 6e-94 >B3KKN2.1 B3KKN2_9BACI ABC transporter related Length = 338 Score = 502 bits (1292), Expect = e-140, Method: Compositional matrix adjust. Identities = 249/337 (73%), Positives = 279/337 (82%) Query: 1 LIELKGLTKVYGKGSKAAMALSGLNLSIKKGEIFGVIGHSGAGKSTLIRCINLLERPTEG 60 +IELK LTK YGK ALS L+LSI+KGEIFGVIGHSGAGKSTLIRCINLLERPT G Sbjct: 1 MIELKQLTKQYGKAGSLTTALSELDLSIEKGEIFGVIGHSGAGKSTLIRCINLLERPTSG 60 Query: 61 EVWVDGVELTSLSQGQLQEQRRKIGMIFQHFNLLSSATVYDNIAFPLRLAGTPKAQIERK 120 EVWV+G LTSL + QLQ +RR+IGMIFQHFNLLSSATVYDNIAFPLRL TPKA++ERK Sbjct: 61 EVWVNGKNLTSLGKKQLQAERRRIGMIFQHFNLLSSATVYDNIAFPLRLIKTPKAELERK 120 Query: 121 XXXXXXXXXXXXHSRKYPAQLSGGQKQRVGVARALASDPDVLLCDEATSALDPQTTDSIL 180 H KYP+QLSGGQKQRVG+ARALASDP+VLLCDEATSALDPQTTDSIL Sbjct: 121 VSELLALVGLEAHRDKYPSQLSGGQKQRVGIARALASDPEVLLCDEATSALDPQTTDSIL 180 Query: 181 RLLLDINRKFHLTIVLITHEMHVIQSICDRVAVIHGGGIVEQGEVADVFLKPQHEVTKDF 240 RLLLDIN+KFHLTIVLITHEMHVIQSICDRVAVIH GGIVEQG VA+VFLKP+HEVT++F Sbjct: 181 RLLLDINKKFHLTIVLITHEMHVIQSICDRVAVIHQGGIVEQGPVAEVFLKPKHEVTQEF 240 Query: 241 IRSENQHEGPLRVALEAVHDKYSKSVKITFLGQKTYESTLSHVVRGTGVDFAILQGTIST 300 IR E LR+A++ + S++V+ITFLG KTYES LSH V TGV+FAILQGTIST Sbjct: 241 IRQEMDSGEALRLAMQGQVNGPSRAVQITFLGSKTYESILSHTVHETGVNFAILQGTIST 300 Query: 301 IKDVPYGQLLVRFEGSAQAVEATLAELAAQGLDVEVF 337 IKD PYGQL+VRFEG +A+E T+ +L QGLDVEV Sbjct: 301 IKDTPYGQLIVRFEGEERAIEDTIRKLLEQGLDVEVI 337 >C0ZJY7.1 C0ZJY7_BREBN Methionine ABC transporter ATP-binding protein Length = 337 Score = 403 bits (1036), Expect = e-110, Method: Compositional matrix adjust. Identities = 206/340 (60%), Positives = 255/340 (75%), Gaps = 6/340 (1%) Query: 1 LIELKGLTKVYGKGSKAAMALSGLNLSIKKGEIFGVIGHSGAGKSTLIRCINLLERPTEG 60 +I+L+ L K Y K AL+G++LSI++GEI+G+IGHSGAGKSTLIRCINLLERPT G Sbjct: 1 MIQLRHLHKSYQVQGKTIPALTGIDLSIEQGEIYGIIGHSGAGKSTLIRCINLLERPTSG 60 Query: 61 EVWVDGVELTSLSQGQLQEQRRKIGMIFQHFNLLSSATVYDNIAFPLRLAGTPKAQIERK 120 EV VDGV+LT L +G+LQE+RR IGMIFQHFNLLSS+TV +N+AFPL+LA KA+I++K Sbjct: 61 EVIVDGVDLTKLDEGKLQEKRRAIGMIFQHFNLLSSSTVGENVAFPLKLAKRSKAEIDKK 120 Query: 121 XXXXXXXXXXXXHSRKYPAQLSGGQKQRVGVARALASDPDVLLCDEATSALDPQTTDSIL 180 H KYP+QLSGGQKQRVG+ARALA+DP VLLCDEATSALDPQTT+SIL Sbjct: 121 VNELLKLVGLEAHKDKYPSQLSGGQKQRVGIARALANDPKVLLCDEATSALDPQTTNSIL 180 Query: 181 RLLLDINRKFHLTIVLITHEMHVIQSICDRVAVIHGGGIVEQGEVADVFLKPQHEVTKDF 240 LLLDINRK LTIVLITHEMHVI+SICDRV VI GG IVE G V DVFL+P+H T++F Sbjct: 181 ALLLDINRKLGLTIVLITHEMHVIRSICDRVGVIDGGKIVESGNVLDVFLRPKHPTTQEF 240 Query: 241 IRSENQHEGPLRVALEAVHDKYSKS---VKITFLGQKTYESTLSHVVRGTGVDFAILQGT 297 + + LR A+E H+K S + ++TFLG+KTY+ L ++ TG F+ILQGT Sbjct: 241 V-EQVADSTELREAVE--HEKASGNRTIARVTFLGEKTYQPILFQTMQETGTVFSILQGT 297 Query: 298 ISTIKDVPYGQLLVRFEGSAQAVEATLAELAAQGLDVEVF 337 IS +KD PYGQL++ EG + T+ L +GL+VEV Sbjct: 298 ISRMKDTPYGQLVIELEGDVAQNQKTIETLRQRGLEVEVI 337 >B1DJA4.1 B1DJA4_9BACL ABC transporter related Length = 317 Score = 385 bits (990), Expect = e-105, Method: Compositional matrix adjust. Identities = 189/315 (60%), Positives = 236/315 (74%), Gaps = 4/315 (1%) Query: 20 ALSGLNLSIKKGEIFGVIGHSGAGKSTLIRCINLLERPTEGEVWVDGVELTSLSQGQLQE 79 A+ ++L+I KGEIFG+IGHSGAGKSTL+RC+NLLERPT G V V VELT LS QLQ+ Sbjct: 3 AVKNISLTINKGEIFGIIGHSGAGKSTLLRCVNLLERPTSGTVKVGEVELTRLSSTQLQK 62 Query: 80 QRRKIGMIFQHFNLLSSATVYDNIAFPLRLAGTPKAQIERKXXXXXXXXXXXXHSRKYPA 139 +RR+IGMIFQHFNLLS ATV DNIAFPL LA P+A ++++ H+ KYPA Sbjct: 63 ERRRIGMIFQHFNLLSMATVRDNIAFPLELAKMPRAAVKQRVDELLKLVGLEQHADKYPA 122 Query: 140 QLSGGQKQRVGVARALASDPDVLLCDEATSALDPQTTDSILRLLLDINRKFHLTIVLITH 199 QLSGGQKQRVG+ARALA++PDVLLCDEATSALDPQTT++IL LL+DIN+K +TI+LITH Sbjct: 123 QLSGGQKQRVGIARALANNPDVLLCDEATSALDPQTTNAILSLLMDINQKLGITILLITH 182 Query: 200 EMHVIQSICDRVAVIHGGGIVEQGEVADVFLKPQHEVTKDFIRSENQHEGPLRVALEAVH 259 EMHVI+SICDRVAVI GG IVE G+V DVFLKPQH +TKDF+ P E + Sbjct: 183 EMHVIRSICDRVAVIDGGEIVEMGDVLDVFLKPQHSITKDFVSQIADSFDP----RELID 238 Query: 260 DKYSKSVKITFLGQKTYESTLSHVVRGTGVDFAILQGTISTIKDVPYGQLLVRFEGSAQA 319 + + +KI ++G+ TYE L + V+ T V F ILQGT+S +K+ PYGQL++ F G Sbjct: 239 TRSGRLIKINYVGEITYEPLLFNAVKSTSVQFTILQGTVSRMKNTPYGQLVIEFIGDNGE 298 Query: 320 VEATLAELAAQGLDV 334 ++ L EL A+GL+V Sbjct: 299 IDRVLDELRAKGLEV 313 >A1HMH5.1 A1HMH5_9FIRM ABC transporter related Length = 360 Score = 354 bits (908), Expect = 7e-96, Method: Compositional matrix adjust. Identities = 183/350 (52%), Positives = 234/350 (66%), Gaps = 22/350 (6%) Query: 1 LIELKGLTKVYGKGSKAAMALSGLNLSIKKGEIFGVIGHSGAGKSTLIRCINLLERPTEG 60 +I+L G+ KVY + A AL G+NL +++GEIFGVIG SGAGKSTLIRCIN+LERPT G Sbjct: 9 MIKLTGIEKVYPGTNGAVHALKGINLQVRRGEIFGVIGKSGAGKSTLIRCINMLERPTRG 68 Query: 61 EVWVDGVELTSLSQGQLQEQRRKIGMIFQHFNLLSSATVYDNIAFPLRLAGTPKAQIERK 120 V VDG ELT++S+ L+E+R+KIGMIFQHFNLLSS TVY+N+AFPL LAG K +I + Sbjct: 69 SVVVDGEELTTMSEKDLRERRKKIGMIFQHFNLLSSRTVYENVAFPLELAGKSKTEIAQA 128 Query: 121 XXXXXXXXXXXXHSRKYPAQLSGGQKQRVGVARALASDPDVLLCDEATSALDPQTTDSIL 180 +YP+QLSGGQKQRVG+ARALAS P VLLCDEATSALDPQTT SIL Sbjct: 129 VLPLLELVGLADKRDQYPSQLSGGQKQRVGIARALASRPKVLLCDEATSALDPQTTQSIL 188 Query: 181 RLLLDINRKFHLTIVLITHEMHVIQSICDRVAVIHGGGIVEQGEVADVFLKPQHEVTKDF 240 +LL DIN+K LTIVLITHEM VI+ ICDRVAVI G I+E+G V DVF +PQ T++F Sbjct: 189 KLLFDINQKLQLTIVLITHEMQVIKEICDRVAVIENGVIIEEGPVLDVFTRPQTATTREF 248 Query: 241 IRSENQHEGPLRVALEAVHDKYSKSV-------------KITFLGQKTYESTLSHVVRGT 287 IR+ H+ P D ++ +V +++F+G+ E ++ ++R Sbjct: 249 IRTIVNHDLP---------DFFADTVFSPTPLPDSNLILRLSFIGRSAEEPIIAGMIRRF 299 Query: 288 GVDFAILQGTISTIKDVPYGQLLVRFEGSAQAVEATLAELAAQGLDVEVF 337 VD +IL G I IK P+G L+V G ++ L L A+ L +EV Sbjct: 300 NVDTSILYGNIDHIKRTPFGTLIVELSGDQAGIQNALNYLRARDLGIEVI 349 >B0K2A4.1 B0K2A4_THEPX ABC transporter related Length = 344 Score = 347 bits (891), Expect = 6e-94, Method: Compositional matrix adjust. Identities = 179/341 (52%), Positives = 233/341 (68%), Gaps = 4/341 (1%) Query: 1 LIELKGLTKVYGKGSKAAMALSGLNLSIKKGEIFGVIGHSGAGKSTLIRCINLLERPTEG 60 +I ++ LTKVY S AL +NL+I+KG+IFG+IG SGAGKSTL+RCIN+LE+PT G Sbjct: 1 MIYIRNLTKVYHSASGNVRALEDVNLNIEKGDIFGIIGLSGAGKSTLLRCINMLEKPTSG 60 Query: 61 EVWVDGVELTSLSQGQLQEQRRKIGMIFQHFNLLSSATVYDNIAFPLRLAGTPKAQIERK 120 + +DGVE+T LS +L+E R+KIGMIFQHFNLLSS TV N+AFPL +AG K I++K Sbjct: 61 SIEIDGVEMTRLSPSELKEMRKKIGMIFQHFNLLSSRTVRGNVAFPLEIAGLDKRTIDKK 120 Query: 121 XXXXXXXXXXXXHSRKYPAQLSGGQKQRVGVARALASDPDVLLCDEATSALDPQTTDSIL 180 + YP+QLSGGQKQRVG+ARALA+DP VLLCDE TSALDP+TT SIL Sbjct: 121 VENLLELVGLSDKADNYPSQLSGGQKQRVGIARALANDPKVLLCDEPTSALDPETTLSIL 180 Query: 181 RLLLDINRKFHLTIVLITHEMHVIQSICDRVAVIHGGGIVEQGEVADVFLKPQHEVTKDF 240 LL DINR+ +TIVLITHEM+VI+ IC++VAVI +VEQG + +VF KPQ E ++F Sbjct: 181 NLLKDINRELGITIVLITHEMNVIKQICNKVAVIEKSRVVEQGPLIEVFKKPQTETARNF 240 Query: 241 IRSENQHEGP--LRVALEAVHDKY--SKSVKITFLGQKTYESTLSHVVRGTGVDFAILQG 296 ++S E P L+ +E + ++ K +KI F G+ T E +S+++R VD IL G Sbjct: 241 LKSVTLSEMPKELKDRIENLSHEHLEGKIIKIAFFGEITTEPVISNIIRKFDVDTNILYG 300 Query: 297 TISTIKDVPYGQLLVRFEGSAQAVEATLAELAAQGLDVEVF 337 I I+ +PYG L+V G +A L L GLDVEV Sbjct: 301 NIDHIQGMPYGTLIVELRGKNGETDAALKYLKDLGLDVEVI 341 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.136 0.380 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,754,426,173 Number of extensions: 65811031 Number of successful extensions: 513638 Number of sequences better than 1.0e-05: 89407 Number of HSP's gapped: 391491 Number of HSP's successfully gapped: 96877 Length of query: 338 Length of database: 3,060,696,203 Length adjustment: 136 Effective length of query: 202 Effective length of database: 1,779,438,163 Effective search space: 359446508926 Effective search space used: 359446508926 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 131 (55.1 bits)