BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0109.0014.p
         (248 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KKN3.1 B3KKN3_9BACI Putative uncharacterized protein                326   1e-87
B1DJ25.1 B1DJ25_9BACL Putative uncharacterized protein                201   5e-50

>B3KKN3.1 B3KKN3_9BACI Putative uncharacterized protein
          Length = 239

 Score =  326 bits (835), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 153/239 (64%), Positives = 189/239 (79%)

Query: 1   MLRILLGEPPRENSGMLAEAMDNMAKVASMLRREMNTHEDPDHESRKLEIWTRGLISSLD 60
           MLR+LLGE PR+N+G+L EA+++M K   +L++EM+ ++DP H+ RKLEIWTRGLI SLD
Sbjct: 1   MLRMLLGEQPRQNNGLLEEAIESMVKTTRLLQKEMDKNQDPTHDFRKLEIWTRGLIVSLD 60

Query: 61  ELEQSWFAAAFFRKSVVAGYMDDMSPKEQGEYARYVYFYKNGFIRVFSLLDKLGTVLNSL 120
           ELEQSW AA  F +SV +GY+DDMS +EQGEY RYVYFYKNGFIRVFS+LDKLGTVLN L
Sbjct: 61  ELEQSWNAAKHFSQSVQSGYIDDMSIQEQGEYQRYVYFYKNGFIRVFSILDKLGTVLNDL 120

Query: 121 YDLNTSKVKVHFSYFTVLRQFQLHEKHTAFAGELETIKNAYREPLENLRKRRNAEIHYMN 180
           +DL+TSKVK HFSYFTVLRQF+  + H   A ELE IK+ Y+ PL  LRKRRNAEIHYMN
Sbjct: 121 FDLHTSKVKAHFSYFTVLRQFRFLKAHGELAEELEAIKDRYKAPLNALRKRRNAEIHYMN 180

Query: 181 AEMQDDLWQRHQGLHDKIXXXXXXXXXXXXKQSLEMVCKSLAASFRYSNEQWHKGKIAA 239
           +EMQDDLWQRHQGL DKI            +Q ++MVC+SLAAS++Y+N+ W +  + A
Sbjct: 181 SEMQDDLWQRHQGLSDKIELEDIDKHLDDLQQGIDMVCRSLAASYKYTNKLWTENGVRA 239


>B1DJ25.1 B1DJ25_9BACL Putative uncharacterized protein
          Length = 235

 Score =  201 bits (511), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 102/228 (44%), Positives = 140/228 (61%)

Query: 1   MLRILLGEPPRENSGMLAEAMDNMAKVASMLRREMNTHEDPDHESRKLEIWTRGLISSLD 60
           MLR L  EP RE  G LAE +  M +  ++L  ++   +D DH+ R  E+WT+GL++SL+
Sbjct: 1   MLRFLFDEPEREPQGRLAETLQLMNQFIAILHEKIEAGKDNDHKLRTYEVWTKGLVASLN 60

Query: 61  ELEQSWFAAAFFRKSVVAGYMDDMSPKEQGEYARYVYFYKNGFIRVFSLLDKLGTVLNSL 120
           E+EQS +AA  F++ + +  +  MS +EQ  Y RYVYF KN FIR+F+LLDKL   LN +
Sbjct: 61  EIEQSCYAARRFKEKIKSPSVSQMSEEEQLNYQRYVYFDKNAFIRIFALLDKLSIFLNDI 120

Query: 121 YDLNTSKVKVHFSYFTVLRQFQLHEKHTAFAGELETIKNAYREPLENLRKRRNAEIHYMN 180
            DL T K+K HFSYFTVLR  +  + H     +L  IK + +EP+  LRKRRN EIHYMN
Sbjct: 121 LDLKTEKIKPHFSYFTVLRNMRDKKAHPDLTWKLNDIKESLKEPMGRLRKRRNTEIHYMN 180

Query: 181 AEMQDDLWQRHQGLHDKIXXXXXXXXXXXXKQSLEMVCKSLAASFRYS 228
            EMQDDL Q H+    ++            +  L+MV  SL  +F Y+
Sbjct: 181 TEMQDDLAQAHKIYGQEVQLENIAAQSEDLQHGLQMVTGSLRLTFDYA 228


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.320    0.133    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 1,362,003,246
Number of extensions: 48348588
Number of successful extensions: 114226
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 114226
Number of HSP's successfully gapped: 2
Length of query: 248
Length of database: 3,060,696,203
Length adjustment: 132
Effective length of query: 116
Effective length of database: 1,817,122,223
Effective search space: 210786177868
Effective search space used: 210786177868
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)