BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0109.0013.p (584 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1DJ26.1 B1DJ26_9BACL UbiD family decarboxylase 692 0.0 B1I0T6.1 B1I0T6_DESAP UbiD family decarboxylase 534 e-149 Q1NM71.1 Q1NM71_9DELT Carboxylyase-related protein 488 e-136 Q1NWQ9.1 Q1NWQ9_9DELT Carboxylyase-related protein 488 e-136 B0SSJ5.1 B0SSJ5_LEPBP Putative 3-octaprenyl-4-hydroxybenzoate ca... 439 e-121 >B1DJ26.1 B1DJ26_9BACL UbiD family decarboxylase Length = 588 Score = 692 bits (1787), Expect = 0.0, Method: Compositional matrix adjust. Identities = 334/582 (57%), Positives = 414/582 (71%), Gaps = 1/582 (0%) Query: 1 LRQWIEQLRKDKDLAVIDAPVDPYLELAEIHRRVVREEGPALLFTNVKDTPFPVATNLFG 60 LR+++E L+K+ DL VIDA VDPYLELAEIHRRV+ EEGPALLFTNVK +PFPV TN+FG Sbjct: 6 LREFVEVLKKENDLLVIDAQVDPYLELAEIHRRVIEEEGPALLFTNVKGSPFPVLTNMFG 65 Query: 61 TVRRANQAFGTRPEQLVKTLMGAMETLLPPTASGXXXXXXXXXXXXXVGTRNVPQGEAPV 120 T RR + AFGTRPE+++K ++GA + ++PPT VG + VP G AP+ Sbjct: 66 TSRRVDLAFGTRPEEIMKQIVGAADRIMPPTPKALWGEKKLIWDMMKVGMKEVPSGTAPI 125 Query: 121 LGVCRSTEPLKELPRITGWQEEGGPSLTLPLVYTESITHPQNHNLGIYRVQIYDDSKAGV 180 L V + PL LPR+T WQE+GGP +TLPLVYTES+ + HNLG+YR+QI+DDS G+ Sbjct: 126 LQVLKRQNPLAGLPRVTSWQEDGGPFITLPLVYTESLKSRKAHNLGMYRMQIFDDSTTGM 185 Query: 181 YWQKHKGGGFHHREAEQLGEPLPVSVFLGGXXXXXXXXXXXVQERXXXXXXXXXXXXXXX 240 +WQ HKGGGFH+ EAEQ E LPVSVFLGG + E Sbjct: 186 HWQIHKGGGFHYHEAEQRNEALPVSVFLGGPPALIASAIAPLPEHLPELLMASLILGGKL 245 Query: 241 QMVKDPMGGHQIPAEAEFAIRGLIAPHERRAEGPFGDHYGFYSAPLHFPVMHVQRIWHRK 300 +V DP H+IPAEAEF I G + H RR EGPFGDH+G+YS FPV +V +WHRK Sbjct: 246 PVVSDPHSKHRIPAEAEFVISGQVPAHLRRPEGPFGDHFGYYSLIHDFPVFNVNHVWHRK 305 Query: 301 DAIFPATIIGKPRQEDYYLREYIQRLLAPVYPLLMPSVKALWEYSECGPHSLVSAVVRES 360 DAI+PATI+GKPRQEDYYL EY+QRLLAP +P++MP V LW Y+E G H+L +AVVRES Sbjct: 306 DAIYPATIVGKPRQEDYYLGEYLQRLLAPAFPMVMPGVHELWAYAEAGVHALAAAVVRES 365 Query: 361 YPREAVVSAYRILGEGQLSLTKFLLLTNEPVELAEFPKLLESVLERFNPASDFLVYGNAA 420 Y REA+ +A+ ILG+GQL+LTKFL+LT++P++L+ F LLE+VLERF P +D V+ + Sbjct: 366 YSREALSTAFSILGQGQLTLTKFLMLTDQPIDLSRFDVLLETVLERFEPQTDLFVFDETS 425 Query: 421 PDEQDHSPNAMNPGSKAIMLGVGNPVRELPSAYTEGLLPGITEAIPYCRGCLAVSGASYE 480 D D++ N GSKA+MLGVG PVRELPS+Y EG++ IT A YCRGCL VSGASYE Sbjct: 426 HDTLDYTSGKFNHGSKAVMLGVGKPVRELPSSYKEGVIEEITNAQVYCRGCLVVSGASYE 485 Query: 481 EDPELPSRLIAALRAQETAWPLVFVVDNAPDTVRTQTSFLWTVFTRFDPASDIYAEYEIK 540 +P+L RL+A L + T WPLV + D+A + QTSFLWTVFTRF+PA DIYA EI+ Sbjct: 486 AEPQLAERLLARLSERGTEWPLVILADDA-NVAHGQTSFLWTVFTRFNPADDIYANAEIR 544 Query: 541 SHHIGYKLPLVIDARMKRDYPEELVPREDIVQRVDRNWNSYF 582 HH GYKLP+VIDARMK YP EL REDI + VD WN YF Sbjct: 545 RHHFGYKLPIVIDARMKPGYPAELFAREDITKLVDSRWNEYF 586 >B1I0T6.1 B1I0T6_DESAP UbiD family decarboxylase Length = 589 Score = 534 bits (1375), Expect = e-149, Method: Compositional matrix adjust. Identities = 281/585 (48%), Positives = 376/585 (64%), Gaps = 11/585 (1%) Query: 1 LRQWIEQLRKDKDLAVIDAPVDPYLELAEIHRRVVREEGPALLFTNVKDTPFPVATNLFG 60 L +++ LR++++L + A VDPYLE+ EIHRRV+ GPALLF+ VK++P+PV TN+FG Sbjct: 6 LHEFMATLRRERELIEVRAEVDPYLEIPEIHRRVIAAGGPALLFSRVKNSPYPVLTNMFG 65 Query: 61 TVRRANQAFGTRPEQLVKTLMGAMETLLPPTASGXXXXXXXXXXXXXVGTRNVPQGEAPV 120 T +R AFG RP LV+ + +ET+LPP SG VGT + APV Sbjct: 66 TPKRIEIAFGPRPAALVREAVHLVETMLPPRLSGLWRARGTLRDLARVGTGRARR--APV 123 Query: 121 LGVCRSTEPLKELPRITGWQEEGGPSLTLPLVYTESITHPQN--HNLGIYRVQIYDDSKA 178 V L LP +TGW +GG LTLPLVYTE HP+ HNLG+YRVQ YD + A Sbjct: 124 TEVTERPARLDRLPMLTGWPRDGGAFLTLPLVYTE---HPETGKHNLGMYRVQRYDPATA 180 Query: 179 GVYWQKHKGGGFHHREAEQLGEPLPVSVFLGGXXXXXXXXXXXVQERXXXXXXXXXXXXX 238 G++WQ HKGGGFH+ AEQ GE LPV+VFLGG + E Sbjct: 181 GMHWQIHKGGGFHYHVAEQKGEALPVTVFLGGPPALILAAIAPLPEDIPELLFASLLAGR 240 Query: 239 XXQMVKDPMGGHQIPAEAEFAIRGLIAPHERRAEGPFGDHYGFYSAPLHFPVMHVQRIWH 298 ++ ++P GGH + AE EFA+ G + P ERR EGPFGDHYG+YS FPV V ++ Sbjct: 241 KVRLARNPAGGHPLIAECEFALCGEVPPFERRPEGPFGDHYGYYSLAHDFPVFRVHHVYR 300 Query: 299 RKDAIFPATIIGKPRQEDYYLREYIQRLLAPVYPLLMPSVKALWEYSECGPHSLVSAVVR 358 R++ ++PAT++GKPRQEDYY+ EY+ +L+P+YPL+MPSV+ LW Y E G H L +AVV+ Sbjct: 301 RRNPVYPATVVGKPRQEDYYIGEYLTEVLSPLYPLVMPSVRKLWSYGETGFHPLAAAVVK 360 Query: 359 ESYPREAVVSAYRILGEGQLSLTKFLLLTNEPVELAEFPKLLESVLERFNPASDFLVYGN 418 E Y REA+VSA+RILGEGQLSLTKFL++T+ V+L +F LL +L R N +DF V N Sbjct: 361 ERYAREALVSAFRILGEGQLSLTKFLIITDGMVDLKDFRALLTHILARTNWETDFFVLDN 420 Query: 419 AAPDEQDHSPNAMNPGSKAIMLGVGNPVRELPSAYTEGLLPGITEAIPYCRGCLAVSGAS 478 A D D++ +N GSKAI++G+G+ RELP ++ L G+ +C GCL +GA Sbjct: 421 LAMDTLDYAGPELNRGSKAILMGLGHARRELPRSFAGELPAGVGAVEVFCPGCLVAAGAP 480 Query: 479 YEEDPELPSRLIAALRAQETAWPLVFVVDNAPDTVRTQTSFLWTVFTRFDPASDIYAE-Y 537 + ++P L +R+ A E WPL+ + D A + R QT FLWTVFTRF+PA+DI+A Sbjct: 481 HADEPGLAARVAAHGTFDE--WPLIVLADRA-EIARDQTDFLWTVFTRFEPAADIHAAGT 537 Query: 538 EIKSHHIGYKLPLVIDARMKRDYPEELVPREDIVQRVDRNWNSYF 582 E++ HH+ Y+ P+VIDARMKR YP E+ P + V VDR W YF Sbjct: 538 EVRRHHLCYRPPVVIDARMKRAYPPEVEPDPETVALVDRRWGEYF 582 >Q1NM71.1 Q1NM71_9DELT Carboxylyase-related protein Length = 588 Score = 488 bits (1256), Expect = e-136, Method: Compositional matrix adjust. Identities = 259/583 (44%), Positives = 354/583 (60%), Gaps = 8/583 (1%) Query: 1 LRQWIEQLRKDKDLAVIDAPVDPYLELAEIHRRVVREEGPALLFTNVKDTPFPVATNLFG 60 LR++++ L+K+ +LAVID PVDPYLE+AEIHRRV+ GPALLF N + + FPV TNLFG Sbjct: 9 LREFLQILQKEGELAVIDEPVDPYLEIAEIHRRVIAAGGPALLFNNPRGSKFPVVTNLFG 68 Query: 61 TVRRANQAFGTRPEQLVKTLMGAMETLLPPTASGXXXXXXXXXXXXXVGTRNVPQGEAPV 120 + R AFG RP + V L+ +ET+LPP+ +G + G P+ Sbjct: 69 SAHRMELAFGRRPLKFVAELVETVETMLPPSLGKLWQRRGLLAQATRIGLKKGRSG--PI 126 Query: 121 LGVCRSTEPLKELPRITGWQEEGGPSLTLPLVYTESITHPQNHNLGIYRVQIYDDSKAGV 180 L C++ L ELP +T W +GG +TLPLVYTE + HNLG+YRVQ +DD+ AG+ Sbjct: 127 LENCQTPPKLGELPMLTSWHSDGGAFVTLPLVYTED-PGGRGHNLGMYRVQRFDDTTAGI 185 Query: 181 YWQKHKGGGFHHREAEQLGEPLPVSVFLGGXXXXXXXXXXXVQERXXXXXXXXXXXXXXX 240 +WQ HKGGG+H+ EAE+ E LP+++F+GG + E Sbjct: 186 HWQIHKGGGYHYHEAEKRNESLPLTLFIGGPPALMMAAIAPLPENIPELLLASLIMGKKL 245 Query: 241 QMVKDPMGGHQIPAEAEFAIRGLIAPHERRAEGPFGDHYGFYSAPLHFPVMHVQRIWHRK 300 +V DP GGH + A AEFA +G++ PH RR EGPFGDHYG+ S +PV VQR++HR Sbjct: 246 PLVGDPAGGHPLVAGAEFAAKGVVPPHLRRPEGPFGDHYGYNSLTHDYPVFQVQRLYHRH 305 Query: 301 DAIFPATIIGKPRQEDYYLREYIQRLLAPVYPLLMPSVKALWEYSECGPHSLVSAVVRES 360 AI+PAT++G+P+QED+Y+ +++Q LL+P++PL+M VK L + E G H L +A V + Sbjct: 306 KAIYPATVVGRPKQEDFYIGDFLQELLSPLFPLVMSGVKQLKTFGEAGFHCLAAARVTDR 365 Query: 361 YPREAVVSAYRILGEGQLSLTKFLLLTNEPVELAEFPKLLESVLERFNPASDFLVYGNAA 420 YPREA S RILGEGQLSLTKFL++T+ ++A+F KL VLER + D V+ N + Sbjct: 366 YPREAFASGLRILGEGQLSLTKFLIITDGDFDVADFAKLWNHVLERIDWRRDLFVFANVS 425 Query: 421 PDEQDHSPNAMNPGSKAIMLGVG-NPVRELPSAYTEGLLPGITEAIPYCRGCLAVSGASY 479 D D++ ++N GSKA+M+G+G P R LP + + L A Y G L V G SY Sbjct: 426 QDTLDYTGPSVNAGSKALMMGLGREPRRVLPEQFNQDLPADCQAARAYLPGTLVVQGKSY 485 Query: 480 EEDPELPSRLIAALRAQETAWPLVFVVDNAPDTVRTQTSFLWTVFTRFDPASDIYAEY-- 537 E D ELPSRL A WP+V +VD + F+WT FTRF+PA+DIYA Sbjct: 486 ETDRELPSRL--ANDPLLADWPVVLLVDEVAAACSSLQEFIWTFFTRFEPAADIYAAACE 543 Query: 538 EIKSHHIGYKLPLVIDARMKRDYPEELVPREDIVQRVDRNWNS 580 ++ HIG + P+V D RMK YP L + + VD N Sbjct: 544 PVRRFHIGLREPVVFDCRMKPWYPPVLEVDDATRKLVDGKINK 586 >Q1NWQ9.1 Q1NWQ9_9DELT Carboxylyase-related protein Length = 588 Score = 488 bits (1256), Expect = e-136, Method: Compositional matrix adjust. Identities = 259/583 (44%), Positives = 354/583 (60%), Gaps = 8/583 (1%) Query: 1 LRQWIEQLRKDKDLAVIDAPVDPYLELAEIHRRVVREEGPALLFTNVKDTPFPVATNLFG 60 LR++++ L+K+ +LAVID PVDPYLE+AEIHRRV+ GPALLF N + + FPV TNLFG Sbjct: 9 LREFLQILQKEGELAVIDEPVDPYLEIAEIHRRVIAAGGPALLFNNPRGSKFPVVTNLFG 68 Query: 61 TVRRANQAFGTRPEQLVKTLMGAMETLLPPTASGXXXXXXXXXXXXXVGTRNVPQGEAPV 120 + R AFG RP + V L+ +ET+LPP+ +G + G P+ Sbjct: 69 SAHRMELAFGRRPLKFVAELVETVETMLPPSLGKLWQRRGLLAQAIRIGLKKGRSG--PI 126 Query: 121 LGVCRSTEPLKELPRITGWQEEGGPSLTLPLVYTESITHPQNHNLGIYRVQIYDDSKAGV 180 L C++ L ELP +T W +GG +TLPLVYTE + HNLG+YRVQ +DD+ AG+ Sbjct: 127 LENCQTPPKLGELPMLTSWHSDGGAFVTLPLVYTED-PGGRGHNLGMYRVQRFDDTTAGI 185 Query: 181 YWQKHKGGGFHHREAEQLGEPLPVSVFLGGXXXXXXXXXXXVQERXXXXXXXXXXXXXXX 240 +WQ HKGGG+H+ EAE+ E LP+++F+GG + E Sbjct: 186 HWQIHKGGGYHYHEAEKRNESLPLTLFIGGPPALMMAAIAPLPENIPELLLASLIMGKKL 245 Query: 241 QMVKDPMGGHQIPAEAEFAIRGLIAPHERRAEGPFGDHYGFYSAPLHFPVMHVQRIWHRK 300 +V DP GGH + A AEFA +G++ PH RR EGPFGDHYG+ S +PV VQR++HR Sbjct: 246 PLVGDPAGGHPLVAGAEFAAKGVVPPHLRRPEGPFGDHYGYNSLTHDYPVFQVQRLYHRH 305 Query: 301 DAIFPATIIGKPRQEDYYLREYIQRLLAPVYPLLMPSVKALWEYSECGPHSLVSAVVRES 360 AI+PAT++G+P+QED+Y+ +++Q LL+P++PL+M VK L + E G H L +A V + Sbjct: 306 KAIYPATVVGRPKQEDFYIGDFLQELLSPLFPLVMSGVKQLKTFGEAGFHCLAAARVTDR 365 Query: 361 YPREAVVSAYRILGEGQLSLTKFLLLTNEPVELAEFPKLLESVLERFNPASDFLVYGNAA 420 YPREA S RILGEGQLSLTKFL++T+ ++A+F KL VLER + D V+ N + Sbjct: 366 YPREAFASGLRILGEGQLSLTKFLIITDGDFDVADFAKLWNHVLERIDWRRDLFVFANVS 425 Query: 421 PDEQDHSPNAMNPGSKAIMLGVGN-PVRELPSAYTEGLLPGITEAIPYCRGCLAVSGASY 479 D D++ ++N GSKA+M+G+G P R LP + + L A Y G L V G SY Sbjct: 426 QDTLDYTGPSVNAGSKALMMGLGREPRRVLPEQFNQDLPADCQAARAYLPGTLVVQGKSY 485 Query: 480 EEDPELPSRLIAALRAQETAWPLVFVVDNAPDTVRTQTSFLWTVFTRFDPASDIYAEY-- 537 E D ELPSRL A WP+V +VD + F+WT FTRF+PA+DIYA Sbjct: 486 ETDRELPSRL--ANDPLLADWPVVLLVDEVAAACSSLQEFIWTFFTRFEPAADIYAAACE 543 Query: 538 EIKSHHIGYKLPLVIDARMKRDYPEELVPREDIVQRVDRNWNS 580 ++ HIG + P+V D RMK YP L + + VD N Sbjct: 544 PVRRFHIGLREPVVFDCRMKPWYPPVLEVDDATRKLVDGKINK 586 >B0SSJ5.1 B0SSJ5_LEPBP Putative 3-octaprenyl-4-hydroxybenzoate carboxy-lyase family protein EC=4.1.1.- Length = 590 Score = 439 bits (1128), Expect = e-121, Method: Compositional matrix adjust. Identities = 240/588 (40%), Positives = 353/588 (60%), Gaps = 21/588 (3%) Query: 4 WIEQLRKDKDLAVIDAPVDPYLELAEIHRRVVREEGPALLFTNVKDTPFPVATNLFGTVR 63 +++ L+K+ +L VI VDPYLELAEI RRVV ++GPALLFTNVK T FPVATNL+G+ + Sbjct: 10 FVQLLQKEGELHVISDLVDPYLELAEIQRRVVAKKGPALLFTNVKGTKFPVATNLYGSEK 69 Query: 64 RANQAFGTRPEQLVKTLMGAMETLLPPTASGXXXXXXXXXXXXXVGTRNVPQGEAPVLGV 123 R + AFG +P Q + L + + PP S VG + V + AP+L Sbjct: 70 RIHLAFGPKPVQTIARLAKLAKEMFPPRLSKLWKERSLGLLPFQVGLKQVRR--APILQ- 126 Query: 124 CRSTEPLKELPRITGWQEEGGPSLTLPLVYTESITHPQ--NHNLGIYRVQIYDDSKAGVY 181 S ++ELP++ W ++GGP +TLPLVYTE HP+ N NLG+YRVQ++ + G++ Sbjct: 127 -GSVSRVEELPQLVSWPKDGGPFVTLPLVYTE---HPESGNGNLGMYRVQLFGEKTVGMH 182 Query: 182 WQKHKGGGFHHREAEQLGEPLPVSVFLGGXXXXXXXXXXXVQERXXXXXXXXXXXXXXXQ 241 Q H+GGGFH+ EAE+ G+ L V++GG + E + Sbjct: 183 IQIHRGGGFHYYEAEKQGQALQAHVYIGGPPALTIAAVAPLPEEIPELVFASFLMGEKLR 242 Query: 242 MVKDPMGG-HQIPAEAEFAIRGLIAPHERRAEGPFGDHYGFYSAPLHFPVMHVQRIWHRK 300 M +D + + I A+A+FA+ G I P RR EGPFGDHYG+YS +P + + I HRK Sbjct: 243 MKRDKLVSPYPIVADADFALIGTIPPKLRRPEGPFGDHYGYYSLLHDYPYLDLNHILHRK 302 Query: 301 DAIFPATIIGKPRQEDYYLREYIQRLLAPVYPLLMPSVKALWEYSECGPHSLVSAVVRES 360 DAI+ AT++G+P QED+Y+ E++Q LL+P++PL+MP V +W Y E G HSL +A+V+E Sbjct: 303 DAIWAATVVGRPPQEDHYIAEFLQDLLSPMFPLVMPQVLGVWAYEESGVHSLAAAIVKER 362 Query: 361 YPREAVVSAYRILGEGQLSLTKFLLLTNEPVELAEFPKLLESVLERFNPASDFLVYGNAA 420 Y REA + A RILGEGQLSLTK LL+TNE V L F + + ER +P +DF ++ N + Sbjct: 363 YFREAFMGALRILGEGQLSLTKCLLVTNERVNLKNFSETFRVITERCDPKTDFFIFSNIS 422 Query: 421 PDEQDHSPNAMNPGSKAIMLGVGNPVRELPSAYTEGLLPG------ITEAIPYCRGCLAV 474 D D++ +N GSK + +G+ +P + P+ G + G L V Sbjct: 423 QDTLDYTSGTVNKGSKLLWMGITDPNKPSPNPNLPTQFNGRFKDKRFQNPKVFLPGVLVV 482 Query: 475 SGASYEEDPELPSRLIAALRAQETA-WPLVFVVDNAPDTVRTQTSFLWTVFTRFDPASDI 533 G+ ++ + RL AL +++ + VF+VD++ D V+T + F+WT+FTR +PASD+ Sbjct: 483 KGSEFQPN----DRLAEALLSEDLGHFSYVFLVDDSEDAVKTDSDFIWTMFTRMEPASDV 538 Query: 534 YAEYEIKSHHIGYKLPLVIDARMKRDYPEELVPREDIVQRVDRNWNSY 581 YA E +HI Y++P+V D RMK PE L+P + V+ V+ + + Sbjct: 539 YARTETIRNHISYQIPIVFDCRMKPWIPEVLIPLPETVKLVEERFGKW 586 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.138 0.423 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 3,585,773,289 Number of extensions: 154370255 Number of successful extensions: 278826 Number of sequences better than 1.0e-05: 818 Number of HSP's gapped: 276672 Number of HSP's successfully gapped: 1119 Length of query: 584 Length of database: 3,060,696,203 Length adjustment: 141 Effective length of query: 443 Effective length of database: 1,732,333,088 Effective search space: 767423557984 Effective search space used: 767423557984 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 134 (56.2 bits)