BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0109.0011.p
         (114 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KKN5.1 B3KKN5_9BACI Thioredoxin domain                              202   6e-51
B1DJ28.1 B1DJ28_9BACL Thioredoxin domain                              141   2e-32
C0ZCK5.1 C0ZCK5_BREBN Probable thioredoxin                            124   4e-27
A8RBF1.1 A8RBF1_9FIRM Putative uncharacterized protein                101   2e-20
C5D6B7.1 C5D6B7_9BACI Thioredoxin domain protein                      100   6e-20

>B3KKN5.1 B3KKN5_9BACI Thioredoxin domain
          Length = 114

 Score =  202 bits (515), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 97/114 (85%), Positives = 107/114 (93%)

Query: 1   MDKITSPAEFQVAIQSPRLTVAVFKADWCSDCKFIDPFMPDVEQKYTDRLTLVEVDVDAV 60
           M+KITS AEFQVAIQSPRLTVAVFKADWC DCKFIDPFMP+VE K++++LTLVEVDVDAV
Sbjct: 1   MEKITSEAEFQVAIQSPRLTVAVFKADWCGDCKFIDPFMPEVETKFSNQLTLVEVDVDAV 60

Query: 61  GDVSQEQNILGIPSFVAYSDGRELVRFVNKLRKSREEIEGFLDRALEVYLTIHK 114
           GDVSQ+QNILGIPSFVAYSDGRELVR+VNKLRK REEIE FL RA++VY TIHK
Sbjct: 61  GDVSQQQNILGIPSFVAYSDGRELVRYVNKLRKLREEIEDFLQRAVDVYGTIHK 114


>B1DJ28.1 B1DJ28_9BACL Thioredoxin domain
          Length = 115

 Score =  141 bits (356), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 62/108 (57%), Positives = 85/108 (78%)

Query: 1   MDKITSPAEFQVAIQSPRLTVAVFKADWCSDCKFIDPFMPDVEQKYTDRLTLVEVDVDAV 60
           M+K+T+ A F+ A+Q   +TV VFK  WC+DC +IDPFMPDVEQ+Y  + +  E+D D +
Sbjct: 1   MNKLTTDAAFREAVQGDGITVVVFKTTWCADCHYIDPFMPDVEQQYNGKFSFHEIDRDEL 60

Query: 61  GDVSQEQNILGIPSFVAYSDGRELVRFVNKLRKSREEIEGFLDRALEV 108
            D+  E NILGIPSF+A+ +G+EL+R+VNKLRK+REEIE FLDRA++V
Sbjct: 61  PDLCSELNILGIPSFIAFRNGKELIRYVNKLRKTREEIEQFLDRAVQV 108


>C0ZCK5.1 C0ZCK5_BREBN Probable thioredoxin
          Length = 115

 Score =  124 bits (310), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 56/108 (51%), Positives = 81/108 (75%)

Query: 1   MDKITSPAEFQVAIQSPRLTVAVFKADWCSDCKFIDPFMPDVEQKYTDRLTLVEVDVDAV 60
           M +I + AEF+  I + +  +  F  DWC DC  IDPFMP VE+KY ++L ++EV+ D +
Sbjct: 1   MREIKTEAEFEQVIAATKPVIVKFFTDWCPDCHRIDPFMPAVEEKYKEQLDMIEVNRDTL 60

Query: 61  GDVSQEQNILGIPSFVAYSDGRELVRFVNKLRKSREEIEGFLDRALEV 108
            D+S++ ++ GIPSF+A+ +G+ELVRFV+KL KSREEIE FLDRA++V
Sbjct: 61  PDLSEKYDVFGIPSFIAFHNGKELVRFVSKLGKSREEIEHFLDRAIQV 108


>A8RBF1.1 A8RBF1_9FIRM Putative uncharacterized protein
          Length = 130

 Score =  101 bits (252), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 50/102 (49%), Positives = 69/102 (67%), Gaps = 2/102 (1%)

Query: 1   MDKITSPAEFQVAIQSPRLTVAVFKADWCSDCKFIDPFMPDVEQKYTDRLTLVEVDVDAV 60
           M +I S  EF+ A Q  +L+V VF A+WC DC FI PFMP++  KY  ++    VD D  
Sbjct: 22  MKEIHSLEEFEAAAQD-KLSVFVFSANWCPDCHFITPFMPELITKYK-QIAFYYVDRDTC 79

Query: 61  GDVSQEQNILGIPSFVAYSDGRELVRFVNKLRKSREEIEGFL 102
            D+  +  I+GIPSFVAYS G E+ RFV++LRK+++EI+ FL
Sbjct: 80  MDICLQLQIMGIPSFVAYSKGEEIARFVSRLRKTKDEIDTFL 121


>C5D6B7.1 C5D6B7_9BACI Thioredoxin domain protein
          Length = 104

 Score = 99.8 bits (247), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 44/102 (43%), Positives = 72/102 (70%), Gaps = 2/102 (1%)

Query: 1   MDKITSPAEFQVAIQSPRLTVAVFKADWCSDCKFIDPFMPDVEQKYTDRLTLVEVDVDAV 60
           M  I + A+++  ++  +  + VF ADWC DC+FI PF+P++EQ +++      VD D +
Sbjct: 1   MKTIETAAQYE-EVKKTKKAIFVFSADWCPDCRFIQPFLPEIEQAFSE-YEFYYVDRDQL 58

Query: 61  GDVSQEQNILGIPSFVAYSDGRELVRFVNKLRKSREEIEGFL 102
            +V Q++N+ GIPSF+AY +G+EL RFV+K RK++EE+E F+
Sbjct: 59  LEVCQQENVFGIPSFIAYDNGKELGRFVSKDRKTKEEVERFI 100


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.322    0.138    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 620,680,251
Number of extensions: 22487579
Number of successful extensions: 64492
Number of sequences better than 1.0e-05: 914
Number of HSP's gapped: 64974
Number of HSP's successfully gapped: 914
Length of query: 114
Length of database: 3,060,696,203
Length adjustment: 81
Effective length of query: 33
Effective length of database: 2,297,593,988
Effective search space: 75820601604
Effective search space used: 75820601604
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 125 (52.8 bits)