BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0109.0009.p (164 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KKN8.1 B3KKN8_9BACI Putative uncharacterized protein 183 3e-45 B1DJ32.1 B1DJ32_9BACL Putative uncharacterized protein 157 3e-37 A3IBE3.1 A3IBE3_9BACI Putative uncharacterized protein 119 1e-25 B1HSR9.1 B1HSR9_LYSSC Hypothetical yqgC protein 119 1e-25 Q65HB2.1 Q65HB2_BACLD YqgC 108 2e-22 >B3KKN8.1 B3KKN8_9BACI Putative uncharacterized protein Length = 161 Score = 183 bits (465), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 93/150 (62%), Positives = 120/150 (80%) Query: 4 LAILGWVLIIALFAVGLAGAVYPILPGALAIYLAFFVYGWFFSFDPFGAGFWITQTLIVV 63 + +LGW+++IALF +G+AGA+YPILPG +AIYLA FVYGWFF+F+ + A FWI QT+I+V Sbjct: 3 MDVLGWIIVIALFIIGMAGAIYPILPGVVAIYLALFVYGWFFTFEHYNAWFWIIQTIILV 62 Query: 64 VLFVADYVVGAWGVKKFGGSRASVIGSTIGLILGPLLISAFGLLIGPFVGAFAGELIAGS 123 VLF+ADY V AWGVKK GGS+AS+ GSTIGLI+GP +I AFGL+IGPF+GAF GE++AGS Sbjct: 63 VLFIADYAVNAWGVKKLGGSKASIWGSTIGLIIGPFVIPAFGLIIGPFLGAFLGEMLAGS 122 Query: 124 KPGKALKVXXXXXXXXXXXTVVKIVLQIAM 153 K++KV VVKI+LQ+AM Sbjct: 123 GASKSMKVGFGSVVGLFSSIVVKIILQLAM 152 >B1DJ32.1 B1DJ32_9BACL Putative uncharacterized protein Length = 161 Score = 157 bits (397), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 97/158 (61%), Positives = 117/158 (74%) Query: 4 LAILGWVLIIALFAVGLAGAVYPILPGALAIYLAFFVYGWFFSFDPFGAGFWITQTLIVV 63 + ILGW L++ LF VG+AGA++PILPG AIY AFFVYG+FFSF PFG FW QTLI++ Sbjct: 1 MDILGWSLVVILFVVGMAGAIWPILPGVFAIYGAFFVYGFFFSFKPFGWVFWTVQTLILI 60 Query: 64 VLFVADYVVGAWGVKKFGGSRASVIGSTIGLILGPLLISAFGLLIGPFVGAFAGELIAGS 123 VL +AD+ V AWGV +FGGS+AS+IGSTIGLILGP +I AFGL+IGPF GA GEL GS Sbjct: 61 VLVIADHAVSAWGVHRFGGSKASIIGSTIGLILGPFVIPAFGLIIGPFAGAVIGELAVGS 120 Query: 124 KPGKALKVXXXXXXXXXXXTVVKIVLQIAMVVLFFIWI 161 K+ KV VVKI+LQ AM+VLF IW+ Sbjct: 121 NIEKSFKVGIGSLVGLLTSVVVKIILQAAMIVLFIIWL 158 >A3IBE3.1 A3IBE3_9BACI Putative uncharacterized protein Length = 159 Score = 119 bits (298), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 70/157 (44%), Positives = 98/157 (62%), Gaps = 1/157 (0%) Query: 4 LAILGWVLIIALFAVGLAGAVYPILPGALAIYLAFFVYGWFFSFDPFGAGFWITQTLIVV 63 + ++GW LIIA F + G VYPI+PG L + F +YG FFSF FW+ + L VV Sbjct: 1 MEVVGWFLIIACFIISFVGLVYPIIPGVLFLVGGFLLYGLFFSFAELSWWFWVIELLFVV 60 Query: 64 VLFVADYVVGAWGVKKFGGSRASVIGSTIGLILGPLLISAFGLLIGPFVGAFAGELIAGS 123 +LF AD + A+G+KKFGGS A + GSTIGL++GP +I G+L+GPF+GA ELI Sbjct: 61 LLFGADTLANAFGIKKFGGSNAGMWGSTIGLLIGPFVIPVAGILLGPFLGAVIAELIVEK 120 Query: 124 KP-GKALKVXXXXXXXXXXXTVVKIVLQIAMVVLFFI 159 + +A+K T+ K V+QI M+++FFI Sbjct: 121 RTFSEAVKSGIGSLVGFLTSTIAKAVIQIVMIIVFFI 157 >B1HSR9.1 B1HSR9_LYSSC Hypothetical yqgC protein Length = 159 Score = 119 bits (297), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 69/156 (44%), Positives = 97/156 (62%), Gaps = 1/156 (0%) Query: 4 LAILGWVLIIALFAVGLAGAVYPILPGALAIYLAFFVYGWFFSFDPFGAGFWITQTLIVV 63 + ++GW+L++A F + G VYPI+PG L + F +YG FFSF FWI + L VV Sbjct: 1 MEVVGWILVVACFIISFVGLVYPIIPGVLFLVGGFLLYGLFFSFAELSWWFWIIEILFVV 60 Query: 64 VLFVADYVVGAWGVKKFGGSRASVIGSTIGLILGPLLISAFGLLIGPFVGAFAGELIAGS 123 +LF AD + A+G+KKFGGS A + GSTIGL+ GP +I G+LIGPF+GA ELI Sbjct: 61 LLFGADTLANAFGIKKFGGSSAGMWGSTIGLLFGPFVIPVAGILIGPFLGAVIAELIVEK 120 Query: 124 KP-GKALKVXXXXXXXXXXXTVVKIVLQIAMVVLFF 158 + +A+K T+ K V+QI M+++FF Sbjct: 121 RTFSEAVKSGVGSLVGFLTSTIAKAVIQIVMIIVFF 156 >Q65HB2.1 Q65HB2_BACLD YqgC Length = 160 Score = 108 bits (269), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 55/125 (44%), Positives = 81/125 (64%) Query: 4 LAILGWVLIIALFAVGLAGAVYPILPGALAIYLAFFVYGWFFSFDPFGAGFWITQTLIVV 63 + +L W++I A+F + G VYPI+P + I F +YG+ F+F + FWI + + Sbjct: 1 MDVLYWIIIAAMFVIAFIGLVYPIIPSVVFIVAGFVLYGFLFTFGHYSYLFWIIEGIFTA 60 Query: 64 VLFVADYVVGAWGVKKFGGSRASVIGSTIGLILGPLLISAFGLLIGPFVGAFAGELIAGS 123 VLF ADY+ G+K+FGGSRA++ GSTIGL+ GP +I G+++GPF+GA AGE+I Sbjct: 61 VLFAADYITNLLGIKRFGGSRAAIWGSTIGLLAGPFVIPVAGIILGPFIGALAGEVIVHQ 120 Query: 124 KPGKA 128 K K Sbjct: 121 KDLKT 125 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.333 0.151 0.480 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 912,996,543 Number of extensions: 36829215 Number of successful extensions: 187290 Number of sequences better than 1.0e-05: 239 Number of HSP's gapped: 187083 Number of HSP's successfully gapped: 239 Length of query: 164 Length of database: 3,060,696,203 Length adjustment: 124 Effective length of query: 40 Effective length of database: 1,892,490,343 Effective search space: 75699613720 Effective search space used: 75699613720 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 125 (52.8 bits)