BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0109.0007.p (705 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KKP1.1 B3KKP1_9BACI Peptidoglycan glycosyltransferase EC=2.4.1... 787 0.0 B3KGV5.1 B3KGV5_9BACI Penicillin-binding protein transpeptidase 754 0.0 B3KHA3.1 B3KHA3_9BACI Penicillin-binding protein transpeptidase 721 0.0 B1DJ38.1 B1DJ38_9BACL Peptidoglycan glycosyltransferase EC=2.4.1... 575 e-162 C0ZKI3.1 C0ZKI3_BREBN Penicillin binding protein 323 3e-86 >B3KKP1.1 B3KKP1_9BACI Peptidoglycan glycosyltransferase EC=2.4.1.129 Length = 684 Score = 787 bits (2033), Expect = 0.0, Method: Compositional matrix adjust. Identities = 406/694 (58%), Positives = 495/694 (71%), Gaps = 22/694 (3%) Query: 4 FRKQASPPDGKDSKSSLGLRLNVFFFSTFVIFCVIIIRLAVVQFVEGPNLKEVETSRDTK 63 FR + +D+ S LR+N+FFFSTF+IFCVIIIRLA++QFVEGP LKE+ET K Sbjct: 4 FRPDKRKQEEQDAGSQFNLRVNLFFFSTFIIFCVIIIRLAILQFVEGPELKELETGGQVK 63 Query: 64 NVPLXXXXXXXXXXXXEEIAYSSSVQSLYITLTKEYIAKSTDKKTGETSFTPEARANVYA 123 N PL IAYS+ Q+LY+TL K+Y + KK R + Sbjct: 64 NFPLQPIRGSIIDASGTPIAYSTPSQALYLTLLKDYSSSERGKKN---------RPEIEK 114 Query: 124 LANNLVENFNKYGDPNGEKLTVNDVINSLDLKFKKYSGFMARRIKAGLTPKEVAYFMEHK 183 LA +V F++YGDP EKLTV+DVI ++DL+F K G+ RRIKA L+ KEVAYFMEHK Sbjct: 115 LAEEMVRVFDQYGDPKAEKLTVDDVIKAMDLEFNKQPGYEPRRIKADLSTKEVAYFMEHK 174 Query: 184 EEYPGLEVVEESNRHYNKDTVAVQTVGYIKPFKSAGSLDIYKNIQNAMKKIDNDPGLTYK 243 EYPG+EVVEES R YN D +AVQT+GY+K F+ +LD YK I KK DPGL Y Sbjct: 175 NEYPGVEVVEESQRQYNPDKIAVQTIGYLKEFRGIKTLDKYKEIDEQNKK-QKDPGLIYT 233 Query: 244 DDEFVGFDGLELQYQRELRGKNGYQVISVNPQNMAEKIENMVPPVKGNDVWMTINKNIQL 303 + E VG DGLE+ +Q ELRGKNGY I +NPQNMA+ + M+ P KG ++ TI+K+IQ Sbjct: 234 EQEKVGVDGLEMMFQDELRGKNGYIGIPINPQNMADGVPTMIAPEKGYNIHTTIHKDIQK 293 Query: 304 KTEQAITEQISWLHSHSVQGKTHPDAVTGYAVAMEVDTGNVVAMASMPDYDTNVWTKGSL 363 T+QAI +Q+ WLH++ V GKTHP+A+TGYAVAMEVDTGN+VAMASMPDYD NVW G Sbjct: 294 ATQQAIIDQLKWLHANPVSGKTHPNALTGYAVAMEVDTGNIVAMASMPDYDPNVWENG-- 351 Query: 364 PTDVWNSIIDNYQNGTINPISSGVSGHGLQSVLLMGSTIKPLSVLIGLNEGFFSTSTTYQ 423 TD W S++ Y NGTI+P SSG SG+ L+SV+L+GST+KPLSVLIGLNE F + Y Sbjct: 352 -TDDWESVMKYYGNGTISPYSSGRSGNNLESVVLLGSTMKPLSVLIGLNENLFGPNDYYY 410 Query: 424 DKGIAFFGKNDKSSVRNASGHVYGSMDPSRAIEKSSNVFMVDMVGKKLYEKYGDKGIGVW 483 D G AFFGK D + VRN+ G YGS++ +AIE SSN FMVD +G+KLY KYG + + VW Sbjct: 411 DGGAAFFGK-DNTRVRNSGGKAYGSLNARKAIEHSSNAFMVDWIGEKLYNKYGSESVEVW 469 Query: 484 DKYMKEFGLGVSTQSGLPREFLGQINYTNTKAAGSAQAALVYASFGQQGSYTTLQLAQYA 543 D+YMK+FGLGVST+SGLP+E G I YTN + AGS AA+ YASFGQ G YTTLQLAQYA Sbjct: 470 DRYMKKFGLGVSTESGLPKEHKGIIEYTNIEQAGSYLAAMAYASFGQSGKYTTLQLAQYA 529 Query: 544 STLANEGVRIKPQLVSKITDPDGKVVKTFGREVIDEVTTFDKSFWREIKKGMSSD-VTAF 602 STLAN G RI+PQL SKI D DG V+K F REV+++ F + +W E+ GM++ + AF Sbjct: 530 STLANRGERIRPQLASKIVDQDGNVIKEFKREVLNK-EEFPQQYWNEVIAGMNTQGLRAF 588 Query: 603 SDFPYDFARKTGTSQQSA-KGDLR---DNGVFIAFAPRENPKLAVAVVIPEGGFGSNSAA 658 DF YDFARKTGTS+Q K R +NGVFIAFAPR+NPKLAVAVVIPE GFGS SAA Sbjct: 589 EDFKYDFARKTGTSEQDIYKNGTRIRVENGVFIAFAPRQNPKLAVAVVIPEAGFGSQSAA 648 Query: 659 PVARKIFDAYDWEYGLDGVPKKSLKTEGA-KDGA 691 PVARKIFDAYD YGLDG P KTEG +DG+ Sbjct: 649 PVARKIFDAYDEIYGLDGTPHPK-KTEGENEDGS 681 >B3KGV5.1 B3KGV5_9BACI Penicillin-binding protein transpeptidase Length = 693 Score = 754 bits (1948), Expect = 0.0, Method: Compositional matrix adjust. Identities = 387/700 (55%), Positives = 499/700 (71%), Gaps = 23/700 (3%) Query: 4 FRKQASPPDGKDSKSSLGLRLNVFFFSTFVIFCVIIIRLAVVQFVEGPNLKEVETSRDTK 63 F+ PD +++ R+N+FFFS F+IFCVII+RLA++QFVEGP L ET + K Sbjct: 4 FKPYKDLPDESETRRKFHGRINIFFFSAFLIFCVIIVRLAILQFVEGPELASQETGGEQK 63 Query: 64 NVPLXXXXXXXXXXXXEEIAYSSSVQSLYITLTKEYIAKSTDKKTGETSFTPEARANVYA 123 + PL ++AYS++ SLYITL K+Y +K TDK E R Sbjct: 64 HFPLQPIRGSIIDASGTKLAYSTASNSLYITLMKDY-SKKTDKGK-------ENRPEAEE 115 Query: 124 LANNLVENFNKYGDPNGEKLTVNDVINSLDLKFKKYSGFMARRIKAGLTPKEVAYFMEHK 183 +A LV+ FNKYGDPN E +TV V++ LDL++ K G+ RRIK+ LT +E+AYFME++ Sbjct: 116 MAKRLVQAFNKYGDPNLEPITVKKVMDDLDLEYNKQHGYEPRRIKSDLTKEEIAYFMENR 175 Query: 184 EEYPGLEVVEESNRHYNKDTVAVQTVGYIKPFKSAGSLDIYKNIQNAMKKIDNDPGLTYK 243 ++PG+++VEE+ RHY+ DTVAVQT+GY+K F+ + L +Y+ I + K N PGL Y Sbjct: 176 AKFPGIQIVEENVRHYDPDTVAVQTIGYLKKFRGSKDLKVYEAIDQSNKDQKN-PGLIYT 234 Query: 244 DDEFVGFDGLELQYQRELRGKNGYQVISVNPQNMAEKIENMVPPVKGNDVWMTINKNIQL 303 ++E++G+DGLE +Q ELRGK+GY I +NPQNM + + MV P KG+D+ TI+K+IQL Sbjct: 235 EEEWIGYDGLERMFQEELRGKSGYLSIPINPQNMVDGVPKMVAPEKGHDIHTTIHKDIQL 294 Query: 304 KTEQAITEQISWLHSHSVQGKTHPDAVTGYAVAMEVDTGNVVAMASMPDYDTNVWTKGSL 363 TEQAI +Q+ +LH+H V GK H DA+TGYAVAMEVDTG+VVAMASMPDYD+NV G Sbjct: 295 ATEQAIMDQLQYLHTHPVSGKLHKDALTGYAVAMEVDTGHVVAMASMPDYDSNVRVNGG- 353 Query: 364 PTDVWNSIIDNYQNGTINPISSGVSGHGLQSVLLMGSTIKPLSVLIGLNEGFFSTSTTYQ 423 + ++D NGTI SG SG+G +S++ +GS IKPL+VLIGLNEG F + TY Sbjct: 354 --KITQDVVDASGNGTITIYGSGRSGNGFESMIFLGSVIKPLTVLIGLNEGLFGINDTYP 411 Query: 424 DKGIAFFGKN-DKSSVRNASGHVYGSMDPSRAIEKSSNVFMVDMVGKKLYEKY-GDKGIG 481 D+G A G+ ++ + N+SGH G + P AI++SSN FM+DM+GK+L KY G+KG+ Sbjct: 412 DQGYATIGREGSETRISNSSGHRNGPIKPQLAIQQSSNAFMIDMIGKRLVSKYGGEKGVT 471 Query: 482 VWDKYMKEFGLGVSTQSGLPREFLGQINYTNTKAAGSAQAALVYASFGQQGSYTTLQLAQ 541 VWD+YM++FGLGV T SGLP E G NYT+TKAAGS AAL YASFGQQG YT LQLAQ Sbjct: 472 VWDEYMEKFGLGVVTGSGLPNEHKGLKNYTDTKAAGSNLAALAYASFGQQGKYTPLQLAQ 531 Query: 542 YASTLANEGVRIKPQLVSKITDPDGKVVKTFGREVIDEVTTFDKSFWREIKKGMSSD-VT 600 Y LANEG R+KPQLVSK+TD DG VVK FGREV++EV F K++W+ IK+GM++ + Sbjct: 532 YTVMLANEGKRVKPQLVSKVTDQDGNVVKEFGREVLNEV-EFPKTYWQTIKRGMNTQGLA 590 Query: 601 AFSDFPYDFARKTGTSQQSAKGDLR----DNGVFIAFAPRENPKLAVAVVIPEGGFGSNS 656 AF DF YDFARKTGTS+Q AK + R DNGVFIAFAPR+NPKLAVAVV+PEGGFGS S Sbjct: 591 AFDDFKYDFARKTGTSEQEAKVNGRWQKIDNGVFIAFAPRDNPKLAVAVVVPEGGFGSQS 650 Query: 657 AAPVARKIFDAYDWEYGLDGVPKKSLKTEGAKDGADAGKD 696 AAP+ARKIFDAYD YGLDG P KTEG K D+G+D Sbjct: 651 AAPIARKIFDAYDEVYGLDGTPHPK-KTEGQK--KDSGED 687 >B3KHA3.1 B3KHA3_9BACI Penicillin-binding protein transpeptidase Length = 680 Score = 721 bits (1860), Expect = 0.0, Method: Compositional matrix adjust. Identities = 381/680 (56%), Positives = 479/680 (70%), Gaps = 20/680 (2%) Query: 4 FRKQASPPDGKDSKSSLGLRLNVFFFSTFVIFCVIIIRLAVVQFVEGPNLKEVETSRDTK 63 FR + +D+ + LR+N+FFFSTF+IFCV+IIRLAV+QFVEGP LKE ET +K Sbjct: 4 FRLDKRKSENRDAGTQFNLRVNIFFFSTFIIFCVVIIRLAVLQFVEGPELKEQETGIQSK 63 Query: 64 NVPLXXXXXXXXXXXXEEIAYSSSVQSLYITLTKEYIAKSTDKKTGETSFTPEARANVYA 123 N PL IAYS+S Q+LY+TL K+Y S++K + R + Sbjct: 64 NFPLQPIRGTIFDASETPIAYSTSSQALYVTLLKDY--SSSEKGL-------QNRPEIEK 114 Query: 124 LANNLVENFNKYGDPNGEKLTVNDVINSLDLKFKKYSGFMARRIKAGLTPKEVAYFMEHK 183 + +VE F+++GD + LT ++VI LDL+F K GF RRIK+ L+ KEVAYFME K Sbjct: 115 IVTEMVEVFDRFGDEGAKNLTYDEVIELLDLEFNKQPGFEPRRIKSDLSTKEVAYFMERK 174 Query: 184 EEYPGLEVVEESNRHYNKDTVAVQTVGYIKPFKSAGSLDIYKNIQNAMKKIDNDPGLTYK 243 +YPG+EVVEES R YN D VAVQ +GY+K F+ A + YK I + K DPGL Y Sbjct: 175 SKYPGVEVVEESQRQYNPDQVAVQAIGYLKDFRGAKDENKYKEI-DEQNKTQKDPGLLYT 233 Query: 244 DDEFVGFDGLELQYQRELRGKNGYQVISVNPQNMAEKIENMVPPVKGNDVWMTINKNIQL 303 + E VG GLE+ +Q ELRGK+GY I +NPQNMA+ + M+PP KG +V+ TI+K+IQL Sbjct: 234 EREKVGIYGLEMMFQDELRGKSGYIEIPINPQNMADGVPTMMPPKKGYNVYSTIHKDIQL 293 Query: 304 KTEQAITEQISWLHSHSVQGKTHPDAVTGYAVAMEVDTGNVVAMASMPDYDTNVWTKGSL 363 +QAI +Q+ WLH++ V GK H DA+TGYAVAMEVDTGN+VAMASMPDYD NVW G Sbjct: 294 AAQQAIIDQLKWLHANPVSGKLHQDALTGYAVAMEVDTGNIVAMASMPDYDPNVWENG-- 351 Query: 364 PTDVWNSIIDNYQNGTINPISSGVSGHGLQSVLLMGSTIKPLSVLIGLNEGFFSTSTTYQ 423 TD W +++ +Y NGTI+P SSG SG+ L+S +L+GSTIKPLSVLIGLNE F + Y Sbjct: 352 -TDDWETVLKHYGNGTISPYSSGRSGNNLESTVLLGSTIKPLSVLIGLNEKLFGINDYYS 410 Query: 424 DKGIAFFGKNDKSSVRNASGHVYGSMDPSRAIEKSSNVFMVDMVGKKLYEKYGDKGIGVW 483 D+G A+FGK D S V+N+ +GS++P +AIE SSN FMVD +G++LY KYG + + VW Sbjct: 411 DQGEAYFGK-DNSRVQNSGNKAFGSINPRKAIENSSNAFMVDWIGERLYNKYGSESVEVW 469 Query: 484 DKYMKEFGLGVSTQSGLPREFLGQINYTNTKAAGSAQAALVYASFGQQGSYTTLQLAQYA 543 DKYMK FGLGV T+SGLP+E G I Y N + AGS AA+ YASFGQ G YTTLQLAQYA Sbjct: 470 DKYMKAFGLGVPTESGLPKEHKGIIEYDNIEQAGSYLAAMAYASFGQSGKYTTLQLAQYA 529 Query: 544 STLANEGVRIKPQLVSKITDPDGKVVKTFGREVIDEVTTFDKSFWREIKKGMSSD-VTAF 602 STLAN G RIKPQ+ +I D +G V+K F REV+++V F +W EI GM++ + AF Sbjct: 530 STLANRGERIKPQMAIRIEDQNGNVIKEFEREVLNKV-EFPDQYWNEIIAGMNTQGLRAF 588 Query: 603 SDFPYDFARKTGTSQQ----SAKGDLRDNGVFIAFAPRENPKLAVAVVIPEGGFGSNSAA 658 DF YD ARKTGTS+Q + K + +NGVFIAFAPR+NPKLAVAVVIPE GFGS SAA Sbjct: 589 DDFKYDLARKTGTSEQDIYINGKRNRLENGVFIAFAPRQNPKLAVAVVIPEAGFGSQSAA 648 Query: 659 PVARKIFDAYDWEYGLDGVP 678 PVARKIFDAYD YGLDG P Sbjct: 649 PVARKIFDAYDEVYGLDGTP 668 >B1DJ38.1 B1DJ38_9BACL Peptidoglycan glycosyltransferase EC=2.4.1.129 Length = 687 Score = 575 bits (1482), Expect = e-162, Method: Compositional matrix adjust. Identities = 324/657 (49%), Positives = 415/657 (63%), Gaps = 38/657 (5%) Query: 36 CVIIIRLAVVQFVEGPNLKEVETSRDTKNVPLXXXXXXXXXXXXEEIAYSSSVQSLYITL 95 V+II+LA++QFVEGP L + + T++V + IAYS+S QSLY T+ Sbjct: 32 SVLIIQLAILQFVEGPKLSAQGSQKSTRSVKIAPIRGNIYDSSGNAIAYSTSTQSLYFTI 91 Query: 96 TKEYIAKSTDKKTGETSFTPEARANVYALANNLVENFNKYGDPNGEK-LTVNDVINSLDL 154 S D K G+ A+A L E F + GD EK +TV D+I +DL Sbjct: 92 -------SPDFKDGDAE----------AIAAKLAEIFKEKGDKAPEKQMTVEDIIRQMDL 134 Query: 155 KFKKYSGFMARRIKAGLTPKEVAYFMEHKEEYPGLEVVEESNRHYNKDTVAVQTVGYIKP 214 F++ + RRIK GLT +E+AYF EHK E+ G+++VEES R+Y DTVAVQ VGY+K Sbjct: 135 DFRRNTISTPRRIKTGLTEQEIAYFSEHKSEFKGIDIVEESVRNYTNDTVAVQLVGYLKK 194 Query: 215 FKSAG-SLDIYKNIQNAMKKIDNDPGLTYKDDEFVGFDGLELQYQRELRGKNGYQVISVN 273 FK SLD YK+ N ++DP L Y DDE VGFDGLE YQ LRGKNG + Sbjct: 195 FKGVRESLDFYKDKGN-----EDDPQLQYLDDEDVGFDGLEYMYQDILRGKNG---LKTY 246 Query: 274 PQNMAEKIENMVP---PVKGNDVWMTINKNIQLKTEQAITEQISWLHSHSVQGKTHPDAV 330 P N AE+I V P KG+D+++TIN+N+QL TEQAI +QI + + + + + A Sbjct: 247 PVNNAERIIGPVQITNPQKGDDLYLTINRNVQLTTEQAIVDQIKKISTSTSKAERAEYAK 306 Query: 331 TGYAVAMEVDTGNVVAMASMPDYDTNVWTKGSLPTDVWNSIIDNYQNGTINPI-----SS 385 G+AVAMEV+TG +V+MASMPDYD N+W G + + + + NGTI + + Sbjct: 307 IGFAVAMEVNTGKIVSMASMPDYDPNIWAGGKISNEDYKNFSSVLNNGTIREVFPHYETD 366 Query: 386 GVSGHGLQSVLLMGSTIKPLSVLIGLNEGFFSTSTTYQDKGIAFFG-KNDKSSVRNASGH 444 S++ GST+KPLS+LIGLNE F+T++TY D G FFG K + + NAS H Sbjct: 367 KERNQHPSSLVPPGSTMKPLSILIGLNEKLFTTTSTYFDNGAFFFGAKGHEVRIGNASNH 426 Query: 445 VYGSMDPSRAIEKSSNVFMVDMVGKKLYEKYGDKGIGVWDKYMKEFGLGVSTQSGLPREF 504 YG +DP+ AI SSN FM MVG LYEKYG KG+ VWD YMK+FGLGV T SGL E Sbjct: 427 AYGLLDPASAIAHSSNPFMAKMVGNNLYEKYGKKGVDVWDNYMKQFGLGVLTGSGLRGES 486 Query: 505 LGQINYTNTKAAGSAQAALVYASFGQQGSYTTLQLAQYASTLANEGVRIKPQLVSKITDP 564 G I+Y + + S+Q+ALV ASFGQQ YT LQL QY S LAN G R+KPQ V++I D Sbjct: 487 KGTIDYYHEQQTASSQSALVRASFGQQARYTPLQLVQYVSMLANHGKRMKPQFVNQIKDA 546 Query: 565 DGKVVKTFGREVIDEVTTFDKSFWREIKKGMSS-DVTAFSDFPYDFARKTGTSQQSAKGD 623 DGKVV+TF EV++ V F +S+W EI+ GMS +V F Y + RKTGT+Q G Sbjct: 547 DGKVVQTFKPEVLNTV-DFPESYWNEIEDGMSRVNVQGFDGVTYTYERKTGTAQSDVAGR 605 Query: 624 LRDNGVFIAFAPRENPKLAVAVVIPEGGFGSNSAAPVARKIFDAYDWEYGLDGVPKK 680 DN VFIA+APRENPKLAVAVVIP+G FG AAP+ARKIFDAYD+E GL+G P K Sbjct: 606 RADNAVFIAYAPRENPKLAVAVVIPDGEFGGWGAAPIARKIFDAYDYEVGLNGTPGK 662 >C0ZKI3.1 C0ZKI3_BREBN Penicillin binding protein Length = 669 Score = 323 bits (829), Expect = 3e-86, Method: Compositional matrix adjust. Identities = 201/552 (36%), Positives = 299/552 (54%), Gaps = 57/552 (10%) Query: 162 FMARRIKAGLTPKEVAYFMEHKEEYPGLEVVEESNRHYNKDTVAVQTVGYIKPFKSAGSL 221 ++ + +K LT KE+A EH+ + PG+EVV + R Y+ ++VQ VGY++PF Sbjct: 135 YLEKELKVDLTAKEIAVLGEHRGDLPGIEVVTKPIRKYDPKQISVQAVGYVRPF------ 188 Query: 222 DIYKNIQNAMKKIDNDPGLTYKDDEFVGFDGLELQYQRELRGKNGYQVISVNPQNMAEKI 281 I +N++ A K D Y ++ VG DG+EL Y+ ELRG NGY++ V K Sbjct: 189 HIAENVKLASYK---DESTRYLPNQLVGLDGIELSYENELRGSNGYRMYEVAANQTVVKQ 245 Query: 282 ENMVPPVKGNDVWMTINKNIQLKTEQAITEQISWLHSHSVQGKTHPDAVTGYAVAMEVDT 341 VP V GN V++TI++ +QL +I E + L + + + A Y VA+EV T Sbjct: 246 VEEVPSVPGNHVYLTIDQRVQLGIRDSIREFLPKLRATIPEAR---GAKGAYVVAVEVKT 302 Query: 342 GNVVAMASMPDYDTNVWTKGSLPTDVWNSIIDNYQNGTIN-------------PISSGVS 388 G VVAM S P+YD NVW +G +++ I NGTI I G Sbjct: 303 GKVVAMVSYPEYDPNVWIEGP-DQKMYDQIKLAVTNGTIREAPYNTAPLKGEAAIQEGYK 361 Query: 389 GHGLQSVLLMGSTIKPLSVLIGLNEGFFSTSTTYQDKGIAFFGKNDKSSVRNASGHVYGS 448 G S++ GS IKP++VL+GL EG + S + D G+ +G+ ++N S +G Sbjct: 362 HPG--SIVPSGSVIKPITVLLGLQEGIITPSDRWNDGGVYHYGRGT-DRIKNDSSKAHGM 418 Query: 449 MDPSRAIEKSSNVFMVDMVGKKLYEKYGDKGIGVWDKYMKEFGLGVSTQSGLPREFLGQI 508 + P+ +++KSSN +M +G++L + G + V Y FGLGV T LP E G+ Sbjct: 419 ISPAISLQKSSNTYMAR-IGEELSRRKGKESASVLQSYYHAFGLGVQTGVDLPNENKGKE 477 Query: 509 NYTNTKAAGSAQAALVYASFGQQGSYTTLQLAQYASTLANEGVRIKPQLVSKITDPDGKV 568 +Y A++V ASFGQQ TT+QLAQYA+TLAN+GVR++PQ+V KITD G + Sbjct: 478 DYLVMNENYGPLASMVQASFGQQVRATTMQLAQYAATLANKGVRLQPQMVDKITDAKGNL 537 Query: 569 VKTFGREVIDEVTTFDKSFWREIKKGM-------SSDVTAFSDFPYDFARKTGTSQQSA- 620 VKT+ + + DK +W +++GM + V A++ P+ A KTGTS+Q Sbjct: 538 VKTYTSKTMSTFPHPDK-YWDVLEQGMVMVTKPGGTAVRAYAGMPFQVAAKTGTSEQDIY 596 Query: 621 -----------------KGDLR-DNGVFIAFAPRENPKLAVAVVIPEGGFGSNSAAPVAR 662 K R NGV I++ P ++P LAVAV++PEGG+G SAA ++R Sbjct: 597 VPVTVTDEKTGQKKTKWKMHARITNGVSISYGPVDDPVLAVAVIVPEGGYGGRSAAIISR 656 Query: 663 KIFDAYDWEYGL 674 +++ YD GL Sbjct: 657 SVYEVYDKHIGL 668 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.313 0.131 0.375 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 4,212,576,190 Number of extensions: 181293325 Number of successful extensions: 379634 Number of sequences better than 1.0e-05: 4673 Number of HSP's gapped: 368380 Number of HSP's successfully gapped: 4801 Length of query: 705 Length of database: 3,060,696,203 Length adjustment: 143 Effective length of query: 562 Effective length of database: 1,713,491,058 Effective search space: 962981974596 Effective search space used: 962981974596 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 135 (56.6 bits)