BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0109.0006.p (669 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KKP1.1 B3KKP1_9BACI Peptidoglycan glycosyltransferase EC=2.4.1... 684 0.0 B3KGV5.1 B3KGV5_9BACI Penicillin-binding protein transpeptidase 676 0.0 B3KHA3.1 B3KHA3_9BACI Penicillin-binding protein transpeptidase 666 0.0 B1DJ38.1 B1DJ38_9BACL Peptidoglycan glycosyltransferase EC=2.4.1... 552 e-155 C0ZKI3.1 C0ZKI3_BREBN Penicillin binding protein 320 4e-85 >B3KKP1.1 B3KKP1_9BACI Peptidoglycan glycosyltransferase EC=2.4.1.129 Length = 684 Score = 684 bits (1764), Expect = 0.0, Method: Compositional matrix adjust. Identities = 353/644 (54%), Positives = 438/644 (68%), Gaps = 19/644 (2%) Query: 19 VRLASLQFVEAEALTEIEENQETKTVPLSAIRGIIHAAGGENIAYNTSVQSLYITLTKDY 78 +RLA LQFVE L E+E + K PL IRG I A G IAY+T Q+LY+TL KDY Sbjct: 40 IRLAILQFVEGPELKELETGGQVKNFPLQPIRGSIIDASGTPIAYSTPSQALYLTLLKDY 99 Query: 79 TETYRNKTTNEYEFTDKAKANTASLAARLESVFNQYGDPSGKKLTGEEITTLLDLNFKKT 138 + + R K K + LA + VF+QYGDP +KLT +++ +DL F K Sbjct: 100 SSSERGK---------KNRPEIEKLAEEMVRVFDQYGDPKAEKLTVDDVIKAMDLEFNKQ 150 Query: 139 LGYYPRKIKTGLTPKEVAHFLEHKEQYPGLSIVEEAARHYDKDTVAVQTVGYIRPFKSLD 198 GY PR+IK L+ KEVA+F+EHK +YPG+ +VEE+ R Y+ D +AVQT+GY++ F+ + Sbjct: 151 PGYEPRRIKADLSTKEVAYFMEHKNEYPGVEVVEESQRQYNPDKIAVQTIGYLKEFRGIK 210 Query: 199 SLDLYKNIRSAMKQNNADPGLAYKEEEFVGAYGLEQQYQRELRGKNGYQTISVNPQNMAE 258 +LD YK I K+ DPGL Y E+E VG GLE +Q ELRGKNGY I +NPQNMA+ Sbjct: 211 TLDKYKEIDEQNKKQK-DPGLIYTEQEKVGVDGLEMMFQDELRGKNGYIGIPINPQNMAD 269 Query: 259 EIIESVPPVKGNDIWMTINKNVQMKTEQAIMDQIRWLHTNPVLGKLHPDALTGYAVAMEV 318 + + P KG +I TI+K++Q T+QAI+DQ++WLH NPV GK HP+ALTGYAVAMEV Sbjct: 270 GVPTMIAPEKGYNIHTTIHKDIQKATQQAIIDQLKWLHANPVSGKTHPNALTGYAVAMEV 329 Query: 319 DTGNVVAMASMPDYDTNVWTTDKVEPEVYEKIANNYLNGTIRDTTSGISGNGLKSVIYLG 378 DTGN+VAMASMPDYD NVW + +E + Y NGTI +SG SGN L+SV+ LG Sbjct: 330 DTGNIVAMASMPDYDPNVWENGTDD---WESVMKYYGNGTISPYSSGRSGNNLESVVLLG 386 Query: 379 STVKPLSVLIGLNEGLFSTGDTYNDVGIAYFGKDDNASVKNSSGHVLGPLDPAKAIQESS 438 ST+KPLSVLIGLNE LF D Y D G A+FGKD N V+NS G G L+ KAI+ SS Sbjct: 387 STMKPLSVLIGLNENLFGPNDYYYDGGAAFFGKD-NTRVRNSGGKAYGSLNARKAIEHSS 445 Query: 439 NAFMIDMIGDPLYKKYKSKAPEVWDQYLKAFGLGVSTQSGLPNESAGLGDYMDTKAAGST 498 NAFM+D IG+ LY KY S++ EVWD+Y+K FGLGVST+SGLP E G+ +Y + + AGS Sbjct: 446 NAFMVDWIGEKLYNKYGSESVEVWDRYMKKFGLGVSTESGLPKEHKGIIEYTNIEQAGSY 505 Query: 499 QAAMVYASFGQKGKXXXXXXXXXXXXXXNEGERIKPQLVSRITDAEGKTVKEFHREVLST 558 AAM YASFGQ GK N GERI+PQL S+I D +G +KEF REVL+ Sbjct: 506 LAAMAYASFGQSGKYTTLQLAQYASTLANRGERIRPQLASKIVDQDGNVIKEFKREVLNK 565 Query: 559 ISFDPSYWKEIKKGMNT-AVKAFDGFPYDFARKTGTSEMDAYG----VTRDNGVFIAFAP 613 F YW E+ GMNT ++AF+ F YDFARKTGTSE D Y + +NGVFIAFAP Sbjct: 566 EEFPQQYWNEVIAGMNTQGLRAFEDFKYDFARKTGTSEQDIYKNGTRIRVENGVFIAFAP 625 Query: 614 REHPKLAVAVVIPEGGFGSNSAAPVARKIFDAYDWEYGLNGVPR 657 R++PKLAVAVVIPE GFGS SAAPVARKIFDAYD YGL+G P Sbjct: 626 RQNPKLAVAVVIPEAGFGSQSAAPVARKIFDAYDEIYGLDGTPH 669 >B3KGV5.1 B3KGV5_9BACI Penicillin-binding protein transpeptidase Length = 693 Score = 676 bits (1744), Expect = 0.0, Method: Compositional matrix adjust. Identities = 356/649 (54%), Positives = 451/649 (69%), Gaps = 25/649 (3%) Query: 19 VRLASLQFVEAEALTEIEENQETKTVPLSAIRGIIHAAGGENIAYNTSVQSLYITLTKDY 78 VRLA LQFVE L E E K PL IRG I A G +AY+T+ SLYITL KDY Sbjct: 40 VRLAILQFVEGPELASQETGGEQKHFPLQPIRGSIIDASGTKLAYSTASNSLYITLMKDY 99 Query: 79 TETYRNKTTNEYEFTDKAKAN---TASLAARLESVFNQYGDPSGKKLTGEEITTLLDLNF 135 ++ TDK K N +A RL FN+YGDP+ + +T +++ LDL + Sbjct: 100 SKK-----------TDKGKENRPEAEEMAKRLVQAFNKYGDPNLEPITVKKVMDDLDLEY 148 Query: 136 KKTLGYYPRKIKTGLTPKEVAHFLEHKEQYPGLSIVEEAARHYDKDTVAVQTVGYIRPFK 195 K GY PR+IK+ LT +E+A+F+E++ ++PG+ IVEE RHYD DTVAVQT+GY++ F+ Sbjct: 149 NKQHGYEPRRIKSDLTKEEIAYFMENRAKFPGIQIVEENVRHYDPDTVAVQTIGYLKKFR 208 Query: 196 SLDSLDLYKNIRSAMKQNNADPGLAYKEEEFVGAYGLEQQYQRELRGKNGYQTISVNPQN 255 L +Y+ I + K + +PGL Y EEE++G GLE+ +Q ELRGK+GY +I +NPQN Sbjct: 209 GSKDLKVYEAIDQSNK-DQKNPGLIYTEEEWIGYDGLERMFQEELRGKSGYLSIPINPQN 267 Query: 256 MAEEIIESVPPVKGNDIWMTINKNVQMKTEQAIMDQIRWLHTNPVLGKLHPDALTGYAVA 315 M + + + V P KG+DI TI+K++Q+ TEQAIMDQ+++LHT+PV GKLH DALTGYAVA Sbjct: 268 MVDGVPKMVAPEKGHDIHTTIHKDIQLATEQAIMDQLQYLHTHPVSGKLHKDALTGYAVA 327 Query: 316 MEVDTGNVVAMASMPDYDTNVWTTDKVEPEVYEKIANNYLNGTIRDTTSGISGNGLKSVI 375 MEVDTG+VVAMASMPDYD+NV ++ + + + NGTI SG SGNG +S+I Sbjct: 328 MEVDTGHVVAMASMPDYDSNVRVNGG---KITQDVVDASGNGTITIYGSGRSGNGFESMI 384 Query: 376 YLGSTVKPLSVLIGLNEGLFSTGDTYNDVGIAYFGKDDNAS-VKNSSGHVLGPLDPAKAI 434 +LGS +KPL+VLIGLNEGLF DTY D G A G++ + + + NSSGH GP+ P AI Sbjct: 385 FLGSVIKPLTVLIGLNEGLFGINDTYPDQGYATIGREGSETRISNSSGHRNGPIKPQLAI 444 Query: 435 QESSNAFMIDMIGDPLYKKYKS-KAPEVWDQYLKAFGLGVSTQSGLPNESAGLGDYMDTK 493 Q+SSNAFMIDMIG L KY K VWD+Y++ FGLGV T SGLPNE GL +Y DTK Sbjct: 445 QQSSNAFMIDMIGKRLVSKYGGEKGVTVWDEYMEKFGLGVVTGSGLPNEHKGLKNYTDTK 504 Query: 494 AAGSTQAAMVYASFGQKGKXXXXXXXXXXXXXXNEGERIKPQLVSRITDAEGKTVKEFHR 553 AAGS AA+ YASFGQ+GK NEG+R+KPQLVS++TD +G VKEF R Sbjct: 505 AAGSNLAALAYASFGQQGKYTPLQLAQYTVMLANEGKRVKPQLVSKVTDQDGNVVKEFGR 564 Query: 554 EVLSTISFDPSYWKEIKKGMNT-AVKAFDGFPYDFARKTGTSEMDAYGVTR----DNGVF 608 EVL+ + F +YW+ IK+GMNT + AFD F YDFARKTGTSE +A R DNGVF Sbjct: 565 EVLNEVEFPKTYWQTIKRGMNTQGLAAFDDFKYDFARKTGTSEQEAKVNGRWQKIDNGVF 624 Query: 609 IAFAPREHPKLAVAVVIPEGGFGSNSAAPVARKIFDAYDWEYGLNGVPR 657 IAFAPR++PKLAVAVV+PEGGFGS SAAP+ARKIFDAYD YGL+G P Sbjct: 625 IAFAPRDNPKLAVAVVVPEGGFGSQSAAPIARKIFDAYDEVYGLDGTPH 673 >B3KHA3.1 B3KHA3_9BACI Penicillin-binding protein transpeptidase Length = 680 Score = 666 bits (1718), Expect = 0.0, Method: Compositional matrix adjust. Identities = 344/643 (53%), Positives = 431/643 (67%), Gaps = 19/643 (2%) Query: 19 VRLASLQFVEAEALTEIEENQETKTVPLSAIRGIIHAAGGENIAYNTSVQSLYITLTKDY 78 +RLA LQFVE L E E ++K PL IRG I A IAY+TS Q+LY+TL KDY Sbjct: 40 IRLAVLQFVEGPELKEQETGIQSKNFPLQPIRGTIFDASETPIAYSTSSQALYVTLLKDY 99 Query: 79 TETYRNKTTNEYEFTDKAKANTASLAARLESVFNQYGDPSGKKLTGEEITTLLDLNFKKT 138 + + + + + + VF+++GD K LT +E+ LLDL F K Sbjct: 100 SSSEKGLQN---------RPEIEKIVTEMVEVFDRFGDEGAKNLTYDEVIELLDLEFNKQ 150 Query: 139 LGYYPRKIKTGLTPKEVAHFLEHKEQYPGLSIVEEAARHYDKDTVAVQTVGYIRPFKSLD 198 G+ PR+IK+ L+ KEVA+F+E K +YPG+ +VEE+ R Y+ D VAVQ +GY++ F+ Sbjct: 151 PGFEPRRIKSDLSTKEVAYFMERKSKYPGVEVVEESQRQYNPDQVAVQAIGYLKDFRGAK 210 Query: 199 SLDLYKNIRSAMKQNNADPGLAYKEEEFVGAYGLEQQYQRELRGKNGYQTISVNPQNMAE 258 + YK I K DPGL Y E E VG YGLE +Q ELRGK+GY I +NPQNMA+ Sbjct: 211 DENKYKEIDEQNK-TQKDPGLLYTEREKVGIYGLEMMFQDELRGKSGYIEIPINPQNMAD 269 Query: 259 EIIESVPPVKGNDIWMTINKNVQMKTEQAIMDQIRWLHTNPVLGKLHPDALTGYAVAMEV 318 + +PP KG +++ TI+K++Q+ +QAI+DQ++WLH NPV GKLH DALTGYAVAMEV Sbjct: 270 GVPTMMPPKKGYNVYSTIHKDIQLAAQQAIIDQLKWLHANPVSGKLHQDALTGYAVAMEV 329 Query: 319 DTGNVVAMASMPDYDTNVWTTDKVEPEVYEKIANNYLNGTIRDTTSGISGNGLKSVIYLG 378 DTGN+VAMASMPDYD NVW + +E + +Y NGTI +SG SGN L+S + LG Sbjct: 330 DTGNIVAMASMPDYDPNVWENGT---DDWETVLKHYGNGTISPYSSGRSGNNLESTVLLG 386 Query: 379 STVKPLSVLIGLNEGLFSTGDTYNDVGIAYFGKDDNASVKNSSGHVLGPLDPAKAIQESS 438 ST+KPLSVLIGLNE LF D Y+D G AYFGK DN+ V+NS G ++P KAI+ SS Sbjct: 387 STIKPLSVLIGLNEKLFGINDYYSDQGEAYFGK-DNSRVQNSGNKAFGSINPRKAIENSS 445 Query: 439 NAFMIDMIGDPLYKKYKSKAPEVWDQYLKAFGLGVSTQSGLPNESAGLGDYMDTKAAGST 498 NAFM+D IG+ LY KY S++ EVWD+Y+KAFGLGV T+SGLP E G+ +Y + + AGS Sbjct: 446 NAFMVDWIGERLYNKYGSESVEVWDKYMKAFGLGVPTESGLPKEHKGIIEYDNIEQAGSY 505 Query: 499 QAAMVYASFGQKGKXXXXXXXXXXXXXXNEGERIKPQLVSRITDAEGKTVKEFHREVLST 558 AAM YASFGQ GK N GERIKPQ+ RI D G +KEF REVL+ Sbjct: 506 LAAMAYASFGQSGKYTTLQLAQYASTLANRGERIKPQMAIRIEDQNGNVIKEFEREVLNK 565 Query: 559 ISFDPSYWKEIKKGMNT-AVKAFDGFPYDFARKTGTSEMDAYGVTR----DNGVFIAFAP 613 + F YW EI GMNT ++AFD F YD ARKTGTSE D Y + +NGVFIAFAP Sbjct: 566 VEFPDQYWNEIIAGMNTQGLRAFDDFKYDLARKTGTSEQDIYINGKRNRLENGVFIAFAP 625 Query: 614 REHPKLAVAVVIPEGGFGSNSAAPVARKIFDAYDWEYGLNGVP 656 R++PKLAVAVVIPE GFGS SAAPVARKIFDAYD YGL+G P Sbjct: 626 RQNPKLAVAVVIPEAGFGSQSAAPVARKIFDAYDEVYGLDGTP 668 >B1DJ38.1 B1DJ38_9BACL Peptidoglycan glycosyltransferase EC=2.4.1.129 Length = 687 Score = 552 bits (1422), Expect = e-155, Method: Compositional matrix adjust. Identities = 307/652 (47%), Positives = 412/652 (63%), Gaps = 37/652 (5%) Query: 19 VRLASLQFVEAEALTEIEENQETKTVPLSAIRGIIHAAGGENIAYNTSVQSLYITLTKDY 78 ++LA LQFVE L+ + T++V ++ IRG I+ + G IAY+TS QSLY T++ D+ Sbjct: 36 IQLAILQFVEGPKLSAQGSQKSTRSVKIAPIRGNIYDSSGNAIAYSTSTQSLYFTISPDF 95 Query: 79 TETYRNKTTNEYEFTDKAKANTASLAARLESVFNQYGDPS-GKKLTGEEITTLLDLNFKK 137 + + ++AA+L +F + GD + K++T E+I +DL+F++ Sbjct: 96 KD-----------------GDAEAIAAKLAEIFKEKGDKAPEKQMTVEDIIRQMDLDFRR 138 Query: 138 TLGYYPRKIKTGLTPKEVAHFLEHKEQYPGLSIVEEAARHYDKDTVAVQTVGYIRPFKSL 197 PR+IKTGLT +E+A+F EHK ++ G+ IVEE+ R+Y DTVAVQ VGY++ FK + Sbjct: 139 NTISTPRRIKTGLTEQEIAYFSEHKSEFKGIDIVEESVRNYTNDTVAVQLVGYLKKFKGV 198 Query: 198 -DSLDLYKNIRSAMKQNNADPGLAYKEEEFVGAYGLEQQYQRELRGKNGYQTISVNPQNM 256 +SLD YK+ K N DP L Y ++E VG GLE YQ LRGKNG +T P N Sbjct: 199 RESLDFYKD-----KGNEDDPQLQYLDDEDVGFDGLEYMYQDILRGKNGLKTY---PVNN 250 Query: 257 AEEIIESVP---PVKGNDIWMTINKNVQMKTEQAIMDQIRWLHTNPVLGKLHPDALTGYA 313 AE II V P KG+D+++TIN+NVQ+ TEQAI+DQI+ + T+ + A G+A Sbjct: 251 AERIIGPVQITNPQKGDDLYLTINRNVQLTTEQAIVDQIKKISTSTSKAERAEYAKIGFA 310 Query: 314 VAMEVDTGNVVAMASMPDYDTNVWTTDKVEPEVYEKIANNYLNGTIRDT-----TSGISG 368 VAMEV+TG +V+MASMPDYD N+W K+ E Y+ ++ NGTIR+ T Sbjct: 311 VAMEVNTGKIVSMASMPDYDPNIWAGGKISNEDYKNFSSVLNNGTIREVFPHYETDKERN 370 Query: 369 NGLKSVIYLGSTVKPLSVLIGLNEGLFSTGDTYNDVGIAYFG-KDDNASVKNSSGHVLGP 427 S++ GST+KPLS+LIGLNE LF+T TY D G +FG K + N+S H G Sbjct: 371 QHPSSLVPPGSTMKPLSILIGLNEKLFTTTSTYFDNGAFFFGAKGHEVRIGNASNHAYGL 430 Query: 428 LDPAKAIQESSNAFMIDMIGDPLYKKYKSKAPEVWDQYLKAFGLGVSTQSGLPNESAGLG 487 LDPA AI SSN FM M+G+ LY+KY K +VWD Y+K FGLGV T SGL ES G Sbjct: 431 LDPASAIAHSSNPFMAKMVGNNLYEKYGKKGVDVWDNYMKQFGLGVLTGSGLRGESKGTI 490 Query: 488 DYMDTKAAGSTQAAMVYASFGQKGKXXXXXXXXXXXXXXNEGERIKPQLVSRITDAEGKT 547 DY + S+Q+A+V ASFGQ+ + N G+R+KPQ V++I DA+GK Sbjct: 491 DYYHEQQTASSQSALVRASFGQQARYTPLQLVQYVSMLANHGKRMKPQFVNQIKDADGKV 550 Query: 548 VKEFHREVLSTISFDPSYWKEIKKGMNTA-VKAFDGFPYDFARKTGTSEMDAYGVTRDNG 606 V+ F EVL+T+ F SYW EI+ GM+ V+ FDG Y + RKTGT++ D G DN Sbjct: 551 VQTFKPEVLNTVDFPESYWNEIEDGMSRVNVQGFDGVTYTYERKTGTAQSDVAGRRADNA 610 Query: 607 VFIAFAPREHPKLAVAVVIPEGGFGSNSAAPVARKIFDAYDWEYGLNGVPRK 658 VFIA+APRE+PKLAVAVVIP+G FG AAP+ARKIFDAYD+E GLNG P K Sbjct: 611 VFIAYAPRENPKLAVAVVIPDGEFGGWGAAPIARKIFDAYDYEVGLNGTPGK 662 >C0ZKI3.1 C0ZKI3_BREBN Penicillin binding protein Length = 669 Score = 320 bits (819), Expect = 4e-85, Method: Compositional matrix adjust. Identities = 200/552 (36%), Positives = 296/552 (53%), Gaps = 58/552 (10%) Query: 141 YYPRKIKTGLTPKEVAHFLEHKEQYPGLSIVEEAARHYDKDTVAVQTVGYIRPFKSLDSL 200 Y +++K LT KE+A EH+ PG+ +V + R YD ++VQ VGY+RPF +++ Sbjct: 135 YLEKELKVDLTAKEIAVLGEHRGDLPGIEVVTKPIRKYDPKQISVQAVGYVRPFHIAENV 194 Query: 201 DLYKNIRSAMKQNNADPGLAYKEEEFVGAYGLEQQYQRELRGKNGYQTISVNPQNMAEEI 260 L + D Y + VG G+E Y+ ELRG NGY+ V + Sbjct: 195 KL---------ASYKDESTRYLPNQLVGLDGIELSYENELRGSNGYRMYEVAANQTVVKQ 245 Query: 261 IESVPPVKGNDIWMTINKNVQMKTEQAIMDQIRWLHTNPVLGKLHPDALTG---YAVAME 317 +E VP V GN +++TI++ VQ+ I D IR P L P+A Y VA+E Sbjct: 246 VEEVPSVPGNHVYLTIDQRVQL----GIRDSIREFL--PKLRATIPEARGAKGAYVVAVE 299 Query: 318 VDTGNVVAMASMPDYDTNVWTTDKVEPEVYEKIANNYLNGTIRDT---TSGISGN----- 369 V TG VVAM S P+YD NVW + + ++Y++I NGTIR+ T+ + G Sbjct: 300 VKTGKVVAMVSYPEYDPNVWI-EGPDQKMYDQIKLAVTNGTIREAPYNTAPLKGEAAIQE 358 Query: 370 GLK---SVIYLGSTVKPLSVLIGLNEGLFSTGDTYNDVGIAYFGKDDNASVKNSSGHVLG 426 G K S++ GS +KP++VL+GL EG+ + D +ND G+ ++G+ + +KN S G Sbjct: 359 GYKHPGSIVPSGSVIKPITVLLGLQEGIITPSDRWNDGGVYHYGRGTD-RIKNDSSKAHG 417 Query: 427 PLDPAKAIQESSNAFMIDMIGDPLYKKYKSKAPEVWDQYLKAFGLGVSTQSGLPNESAGL 486 + PA ++Q+SSN +M IG+ L ++ ++ V Y AFGLGV T LPNE+ G Sbjct: 418 MISPAISLQKSSNTYMAR-IGEELSRRKGKESASVLQSYYHAFGLGVQTGVDLPNENKGK 476 Query: 487 GDYMDTKAAGSTQAAMVYASFGQKGKXXXXXXXXXXXXXXNEGERIKPQLVSRITDAEGK 546 DY+ A+MV ASFGQ+ + N+G R++PQ+V +ITDA+G Sbjct: 477 EDYLVMNENYGPLASMVQASFGQQVRATTMQLAQYAATLANKGVRLQPQMVDKITDAKGN 536 Query: 547 TVKEFHREVLSTISFDPSYWKEIKKGM-------NTAVKAFDGFPYDFARKTGTSEMDAY 599 VK + + +ST YW +++GM TAV+A+ G P+ A KTGTSE D Y Sbjct: 537 LVKTYTSKTMSTFPHPDKYWDVLEQGMVMVTKPGGTAVRAYAGMPFQVAAKTGTSEQDIY 596 Query: 600 ---GVTRD----------------NGVFIAFAPREHPKLAVAVVIPEGGFGSNSAAPVAR 640 VT + NGV I++ P + P LAVAV++PEGG+G SAA ++R Sbjct: 597 VPVTVTDEKTGQKKTKWKMHARITNGVSISYGPVDDPVLAVAVIVPEGGYGGRSAAIISR 656 Query: 641 KIFDAYDWEYGL 652 +++ YD GL Sbjct: 657 SVYEVYDKHIGL 668 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.313 0.131 0.374 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 3,897,050,018 Number of extensions: 168303754 Number of successful extensions: 337298 Number of sequences better than 1.0e-05: 2733 Number of HSP's gapped: 331268 Number of HSP's successfully gapped: 3064 Length of query: 669 Length of database: 3,060,696,203 Length adjustment: 143 Effective length of query: 526 Effective length of database: 1,713,491,058 Effective search space: 901296296508 Effective search space used: 901296296508 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 135 (56.6 bits)