BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0109.0005.p (381 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1DJ39.1 B1DJ39_9BACL Transglutaminase domain protein 221 9e-56 B3KKP2.1 B3KKP2_9BACI Transglutaminase domain protein 204 1e-50 B1BIU2.1 B1BIU2_CLOPE Transglutaminase domain protein 117 3e-24 Q0TP39.1 Q0TP39_CLOP1 Transglutaminase domain protein 116 3e-24 B1BQ05.1 B1BQ05_CLOPE Transglutaminase domain protein 116 3e-24 >B1DJ39.1 B1DJ39_9BACL Transglutaminase domain protein Length = 385 Score = 221 bits (563), Expect = 9e-56, Method: Compositional matrix adjust. Identities = 110/207 (53%), Positives = 143/207 (69%), Gaps = 2/207 (0%) Query: 172 YIGVGLNPDSGFSRYVESSPIYSQSAAAVFEPLAGEEVRSKLPVLTQAVADEMNDILRRK 231 +I V L P+ +S ++ SP+Y + A+ V EP+AG+ + + PVL +AV +E ++L+RK Sbjct: 178 FIYVSLAPNGLWSGLIQQSPLYMK-ASDVLEPVAGDMLAGRGPVLAEAVQEEFQNVLQRK 236 Query: 232 YEVIDHEISPDIVGAAADIAGQAKGEEDKARRLYDWIGSRIAYDYGKAENYEQNRIWHEQ 291 YE+ID+ I DI AA + EEDKAR LYDW+GSRIAYD+ KA+NY N +W EQ Sbjct: 237 YEIIDYNIPSDIEQAALQVTKDKNSEEDKARALYDWLGSRIAYDWDKADNYVDNGVWKEQ 296 Query: 292 TPQDTFDTRLGVCIDYARLYAVMARSQGLQVRVVTXXXXXXXXXXXPHAWNEVYL-PDRQ 350 P++TF TR GVCID ARLYAVMAR+ GL V+VVT PHAWNEV + D Sbjct: 297 NPEETFATRKGVCIDVARLYAVMARASGLDVKVVTGTGLDGRGGSGPHAWNEVKVGGDGG 356 Query: 351 AWIPLDSTWASSGDWFDSKDFEKTHIK 377 WIPLD+TWASSGDWF+ DF+KTHI+ Sbjct: 357 TWIPLDATWASSGDWFNPVDFDKTHIR 383 >B3KKP2.1 B3KKP2_9BACI Transglutaminase domain protein Length = 158 Score = 204 bits (520), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 97/158 (61%), Positives = 116/158 (73%) Query: 224 MNDILRRKYEVIDHEISPDIVGAAADIAGQAKGEEDKARRLYDWIGSRIAYDYGKAENYE 283 MN I++RKYEVIDH+I I AA + A +E+KAR+LYDW+GSRIAYD+ K YE Sbjct: 1 MNGIIQRKYEVIDHQIPEGIEQTAAHVVKGASTDEEKARKLYDWVGSRIAYDHDKVTLYE 60 Query: 284 QNRIWHEQTPQDTFDTRLGVCIDYARLYAVMARSQGLQVRVVTXXXXXXXXXXXPHAWNE 343 + RIW EQTPQ+T+DTRLGVCIDYARLYA+MARSQ L+VRVVT PHAWNE Sbjct: 61 EQRIWKEQTPQNTYDTRLGVCIDYARLYAMMARSQDLKVRVVTGRGYNGQGGYGPHAWNE 120 Query: 344 VYLPDRQAWIPLDSTWASSGDWFDSKDFEKTHIKEDVL 381 VYL + + WIPLD TWA SG+WF+ F +THIKE V Sbjct: 121 VYLSEEKRWIPLDPTWAQSGNWFNPPRFNETHIKEQVF 158 >B1BIU2.1 B1BIU2_CLOPE Transglutaminase domain protein Length = 391 Score = 117 bits (292), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 53/129 (41%), Positives = 77/129 (59%), Gaps = 1/129 (0%) Query: 247 AADIAGQAKGEEDKARRLYDWIGSRIAYDYGKAENYEQNRIWHEQTPQDTFDTRLGVCID 306 A ++ AK +KA+R+Y WI I YD KAEN + ++ + F+TR G+C D Sbjct: 255 AKELTKNAKSSREKAKRIYTWISENINYDDNKAENISEKTSQYKSGAIEAFETRKGICFD 314 Query: 307 YARLYAVMARSQGLQVRVVTXXXXXXXXXXXPHAWNEVYLPDRQAWIPLDSTWASSGDWF 366 Y+ LY MAR GL+VR+VT PH+WNEVYLP++ WI +D T+ +G++F Sbjct: 315 YSCLYVAMAREAGLKVRIVT-GEGFNGKEWGPHSWNEVYLPEKNQWITVDPTFGKAGNYF 373 Query: 367 DSKDFEKTH 375 DSK ++H Sbjct: 374 DSKKNSESH 382 >Q0TP39.1 Q0TP39_CLOP1 Transglutaminase domain protein Length = 391 Score = 116 bits (291), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 53/129 (41%), Positives = 77/129 (59%), Gaps = 1/129 (0%) Query: 247 AADIAGQAKGEEDKARRLYDWIGSRIAYDYGKAENYEQNRIWHEQTPQDTFDTRLGVCID 306 A ++ AK +KA+R+Y WI I YD KAEN + ++ + F+TR G+C D Sbjct: 255 AKELTKNAKSSREKAKRIYTWISENINYDDNKAENISEKTSEYKSGAIEAFETRKGICFD 314 Query: 307 YARLYAVMARSQGLQVRVVTXXXXXXXXXXXPHAWNEVYLPDRQAWIPLDSTWASSGDWF 366 Y+ LY MAR GL+VR+VT PH+WNEVYLP++ WI +D T+ +G++F Sbjct: 315 YSCLYVAMAREAGLKVRIVT-GEGFNGKEWGPHSWNEVYLPEKNQWITVDPTFGKAGNYF 373 Query: 367 DSKDFEKTH 375 DSK ++H Sbjct: 374 DSKKNSESH 382 >B1BQ05.1 B1BQ05_CLOPE Transglutaminase domain protein Length = 391 Score = 116 bits (291), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 53/129 (41%), Positives = 77/129 (59%), Gaps = 1/129 (0%) Query: 247 AADIAGQAKGEEDKARRLYDWIGSRIAYDYGKAENYEQNRIWHEQTPQDTFDTRLGVCID 306 A ++ AK +KA+R+Y WI I YD KAEN + ++ + F+TR G+C D Sbjct: 255 AKELTKNAKSSREKAKRIYTWISENINYDDNKAENISEKTSEYKSGAIEAFETRKGICFD 314 Query: 307 YARLYAVMARSQGLQVRVVTXXXXXXXXXXXPHAWNEVYLPDRQAWIPLDSTWASSGDWF 366 Y+ LY MAR GL+VR+VT PH+WNEVYLP++ WI +D T+ +G++F Sbjct: 315 YSCLYVAMAREAGLKVRIVT-GEGFNGKEWGPHSWNEVYLPEKNQWITVDPTFGKAGNYF 373 Query: 367 DSKDFEKTH 375 DSK ++H Sbjct: 374 DSKKNSESH 382 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.317 0.134 0.408 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,790,956,437 Number of extensions: 60483184 Number of successful extensions: 138048 Number of sequences better than 1.0e-05: 56 Number of HSP's gapped: 138125 Number of HSP's successfully gapped: 57 Length of query: 381 Length of database: 3,060,696,203 Length adjustment: 137 Effective length of query: 244 Effective length of database: 1,770,017,148 Effective search space: 431884184112 Effective search space used: 431884184112 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 132 (55.5 bits)