BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0109.0004.p
         (167 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KKP4.1 B3KKP4_9BACI Putative uncharacterized protein                159   1e-37
B1DJ40.1 B1DJ40_9BACL Putative uncharacterized protein                 85   2e-15

>B3KKP4.1 B3KKP4_9BACI Putative uncharacterized protein
          Length = 148

 Score =  159 bits (401), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 73/144 (50%), Positives = 102/144 (70%)

Query: 23  MDPAVWSQFIRENWXXXXXXXXXXXXXXXXXKTVLKWAIVIVIVVGLFIYSGVTLDQIGN 82
           MD  VW +F+++NW                 +TV+KWA+ ++I+ GL +YSG++LD+IG 
Sbjct: 1   MDTQVWIEFLKQNWLVIAIALIILFIVLNVVRTVIKWALAVLIIGGLLVYSGISLDKIGE 60

Query: 83  AVNKVTDGTVSTLKKEAQEVMLKEAQEATYTSGGDGSFTITTPNLELKGAAGEDKVEVTF 142
            V  V + TV T+KKEA  +M+KEA+EA YTS GDG+++I  PNLELKG+AG  +VEVTF
Sbjct: 61  VVTTVKEETVDTIKKEALNMMMKEAKEAQYTSNGDGTYSIKAPNLELKGSAGSKEVEVTF 120

Query: 143 RGVSLGKWSITDTTKTFIDEARKN 166
           RGVS+GKW I DT ++FID+A+ N
Sbjct: 121 RGVSVGKWDINDTIQSFIDDAKSN 144


>B1DJ40.1 B1DJ40_9BACL Putative uncharacterized protein
          Length = 152

 Score = 85.1 bits (209), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 56/143 (39%), Positives = 78/143 (54%), Gaps = 4/143 (2%)

Query: 24  DPAVWSQFIRENWXXXXXXXXXXXXXXXXXKTVLKWAIVIVIVVGLFIYSGVTLDQIGNA 83
           D   WS F++++W                 KT +KWA+V+VIVVG+  YSG TLD     
Sbjct: 11  DWNAWSTFLQDHWLVLVVALVVLLFIIRVVKTFVKWALVLVIVVGIVAYSGYTLDD---- 66

Query: 84  VNKVTDGTVSTLKKEAQEVMLKEAQEATYTSGGDGSFTITTPNLELKGAAGEDKVEVTFR 143
           V  +    + +LK+EA   M  E  +AT+TS  DG+FT+ T NLE+ G  G  +V V FR
Sbjct: 67  VKSIGTQAIDSLKQEAVSAMAGEVDKATFTSNSDGTFTVKTENLEMTGVPGSGEVNVKFR 126

Query: 144 GVSLGKWSITDTTKTFIDEARKN 166
           G S+G   I  T +  ID+A+ N
Sbjct: 127 GKSVGTMKIDSTIQALIDQAKAN 149


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.316    0.132    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 887,724,138
Number of extensions: 29637580
Number of successful extensions: 89417
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 89415
Number of HSP's successfully gapped: 2
Length of query: 167
Length of database: 3,060,696,203
Length adjustment: 125
Effective length of query: 42
Effective length of database: 1,883,069,328
Effective search space: 79088911776
Effective search space used: 79088911776
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 126 (53.1 bits)