BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0109.0001.p
         (118 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KKP6.1 B3KKP6_9BACI Putative uncharacterized protein                178   2e-43
B1DJ43.1 B1DJ43_9BACL TOPRIM domain protein                           155   1e-36
Q24WK8.1 Q24WK8_DESHY Putative uncharacterized protein                 87   4e-16
B8FYP9.1 B8FYP9_DESHD TOPRIM domain protein                            87   4e-16
C0Z5T0.1 C0Z5T0_BREBN Putative uncharacterized protein yusF            85   2e-15

>B3KKP6.1 B3KKP6_9BACI Putative uncharacterized protein
          Length = 115

 Score =  178 bits (451), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 85/112 (75%), Positives = 95/112 (84%)

Query: 1   MSITIIVEGKNDRSRLRRILAPEVDIQCTFGTLNTLKLETLRRKIGDGEVYLYMDNDSSG 60
           M I +IVEGKNDRSRLRR+L  ++ I CTFGTLNT KLE+L +++ D EVYL+MDNDSSG
Sbjct: 1   MPIFLIVEGKNDRSRLRRLLTSDITILCTFGTLNTAKLESLHKQVKDQEVYLFMDNDSSG 60

Query: 61  KKIRGILRDAFPDAVHIYTRKGYAGVEGTPDEYSITQLEKAGLEEFIIYPEP 112
           KKIRG LRD FPDA  IYTR+GYAGVEGTPDEY I QLEKAGLEEFIIYP P
Sbjct: 61  KKIRGALRDVFPDAEQIYTRRGYAGVEGTPDEYLIAQLEKAGLEEFIIYPPP 112


>B1DJ43.1 B1DJ43_9BACL TOPRIM domain protein
          Length = 152

 Score =  155 bits (392), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 74/110 (67%), Positives = 89/110 (80%)

Query: 1   MSITIIVEGKNDRSRLRRILAPEVDIQCTFGTLNTLKLETLRRKIGDGEVYLYMDNDSSG 60
           M I IIVEGKND+S +RR+L   V I CTFGT  T++LE LR+++GD +VY++ DNDSSG
Sbjct: 36  MDIAIIVEGKNDKSHIRRVLDESVPIFCTFGTPGTVQLEKLRKQVGDKDVYIFTDNDSSG 95

Query: 61  KKIRGILRDAFPDAVHIYTRKGYAGVEGTPDEYSITQLEKAGLEEFIIYP 110
           K+IRGILRD FPDA HIYTR+GY GVE TP++Y I QLEKAGLE FI YP
Sbjct: 96  KRIRGILRDLFPDAEHIYTRRGYPGVEHTPEDYLIEQLEKAGLETFIQYP 145


>Q24WK8.1 Q24WK8_DESHY Putative uncharacterized protein
          Length = 115

 Score = 87.4 bits (215), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 47/111 (42%), Positives = 65/111 (58%)

Query: 1   MSITIIVEGKNDRSRLRRILAPEVDIQCTFGTLNTLKLETLRRKIGDGEVYLYMDNDSSG 60
           M+  IIVEGK D+ RL+ +LA  V+I C++GT++  K E    ++ D EVYL +D D SG
Sbjct: 1   MAKVIIVEGKTDKERLQEVLAEPVEILCSYGTISYEKTEEWATQLEDSEVYLLVDADDSG 60

Query: 61  KKIRGILRDAFPDAVHIYTRKGYAGVEGTPDEYSITQLEKAGLEEFIIYPE 111
           +KIR  L  A P+  H+YT + Y  V  TP +     L+ A  E   I PE
Sbjct: 61  EKIRKSLNQALPNIHHLYTHRMYREVATTPLDVLAQVLDHAHFEVKEIRPE 111


>B8FYP9.1 B8FYP9_DESHD TOPRIM domain protein
          Length = 115

 Score = 87.4 bits (215), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 47/111 (42%), Positives = 65/111 (58%)

Query: 1   MSITIIVEGKNDRSRLRRILAPEVDIQCTFGTLNTLKLETLRRKIGDGEVYLYMDNDSSG 60
           M+  IIVEGK D+ RL+ +LA  V+I C++GT++  K E    ++ D EVYL +D D SG
Sbjct: 1   MAKVIIVEGKTDKERLQEVLAEPVEILCSYGTISYEKTEEWATQLEDSEVYLLVDADDSG 60

Query: 61  KKIRGILRDAFPDAVHIYTRKGYAGVEGTPDEYSITQLEKAGLEEFIIYPE 111
           +KIR  L  A P+  H+YT + Y  V  TP +     L+ A  E   I PE
Sbjct: 61  EKIRKSLNQALPNIHHLYTHRMYREVATTPLDVLAQVLDHAHFEVKEIRPE 111


>C0Z5T0.1 C0Z5T0_BREBN Putative uncharacterized protein yusF
          Length = 119

 Score = 85.1 bits (209), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 47/110 (42%), Positives = 67/110 (60%), Gaps = 3/110 (2%)

Query: 5   IIVEGKNDRSRLRRILAPEVDIQCTFGTLNTLKLETL--RRKIGDG-EVYLYMDNDSSGK 61
           +IVEGK D+ RL R+LA  V I CT+G+ +  K E L  + ++ D  E+YL+ D D SGK
Sbjct: 6   MIVEGKTDKERLLRVLAEPVTILCTYGSYSLEKGEKLLAQTEVADADEIYLFTDEDDSGK 65

Query: 62  KIRGILRDAFPDAVHIYTRKGYAGVEGTPDEYSITQLEKAGLEEFIIYPE 111
           K+R  L + FPDA+H++T K Y  V  TP       LE+AG    + +P+
Sbjct: 66  KLRTHLSEDFPDAIHLHTPKMYREVADTPLSVLAEILERAGFAVIVPHPD 115


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.318    0.141    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 745,814,577
Number of extensions: 30461623
Number of successful extensions: 65160
Number of sequences better than 1.0e-05: 120
Number of HSP's gapped: 65211
Number of HSP's successfully gapped: 120
Length of query: 118
Length of database: 3,060,696,203
Length adjustment: 84
Effective length of query: 34
Effective length of database: 2,269,330,943
Effective search space: 77157252062
Effective search space used: 77157252062
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 126 (53.1 bits)