BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0106.0012.p (435 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C0ZAT4.1 C0ZAT4_BREBN Putative uncharacterized protein 293 3e-77 B1HZT8.1 B1HZT8_LYSSC Putative uncharacterized protein 259 5e-67 Q6R6C3.1 Q6R6C3_LISSE Putative uncharacterized protein 88 2e-15 O07689.1 O07689_LISSE ORF C protein 87 3e-15 C2M554.1 C2M554_CAPGI SMI1/KNR4 family protein 66 8e-09 >C0ZAT4.1 C0ZAT4_BREBN Putative uncharacterized protein Length = 441 Score = 293 bits (749), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 167/428 (39%), Positives = 248/428 (57%), Gaps = 6/428 (1%) Query: 5 VKEQMDAWKRQWQELIQALEQKGADT-RFYAGPPAPESGLAEVELRLGIRLPQELRSLLK 63 ++++M+ W W+ L+ +E++GA PPA + E LGI P +R++L Sbjct: 3 MQQRMEKWFEAWKLLMHDMERQGAQVWPLTIEPPATLEEIERREESLGISFPATIRTILL 62 Query: 64 EGAGQAYVYWNLPDAALLPFEVSGELGWDADRLDFFVPPGEEDSGGTQRYLSFHPAGNGD 123 G+ Q + W+LP L PF +SG+LGW D ++ G+E+S +RYL FH GNGD Sbjct: 63 LGSSQVQINWSLPSRTLDPFSLSGDLGWSLDAFEWPYFGGDEESEDEKRYLCFHVGGNGD 122 Query: 124 ELLLDLHSASGTAVVH-WAHETAEYLLLAPSIMEFIDKITALGCVGAEEWQYPEFCGEAG 182 LL+DL + V+ W HET E+LLL S EF++++T LGC+GAE W Y G G Sbjct: 123 MLLIDLATGVDDPPVYSWGHETDEFLLLGKSFTEFVERVTELGCIGAECWNYEALAGADG 182 Query: 183 LDPEKPASRQWMAWLNEYLTLTLAQAQKELPLLLRYAEMFGM-SQETAEAFGRYHAEEVL 241 LD E +++W WL Y TLT +A ++ L+ +A+M G + EAF +Y E +L Sbjct: 183 LDVEGQVAQEWKEWLQIYRTLTFEEAAQDFEKLVLFAKMHGAGNSRIQEAFTQYDWEPIL 242 Query: 242 QAFLERAGQERDSSKKEAILCLAGDALKDKAAEFVRSLWSGTPSLE-VSRSTLAYLSAHC 300 Q ++ + QE SS L + + KA +VRSLW P + + S AYL+A C Sbjct: 243 QKWVTQIEQETSSSNLLLWCQLIVETVGKKAESWVRSLWESGPHYQRLGSSQRAYLTAAC 302 Query: 301 LPEDEGVERVF-RLLEGLAETQKLSGYQANSLLQDFHSRRVIGWMEDKTAFPYGGWDTLF 359 LPE+EG++RV + E +A + L GY ANS L FHSR VI WME A+P GWD LF Sbjct: 303 LPEEEGLQRVLAEMDEVVARKECLVGYAANSHLHHFHSREVIWWMEPHVAYPIEGWDELF 362 Query: 360 VHSQPAPADIIQWLGGSDVQRQIVIAAFPALYDSTGATFFSAAEIRQIRNLLEQALDEAV 419 S+P D+I+WL G++ QRQI ++A+ + ++G + A ++I LL+ A ++A+ Sbjct: 363 AVSRPQWEDLIRWLDGNEAQRQIALSAWGKML-TSGESPSGEANWQEINRLLDVAYEKAI 421 Query: 420 LKKEKQAV 427 L+KEK+ V Sbjct: 422 LRKEKERV 429 >B1HZT8.1 B1HZT8_LYSSC Putative uncharacterized protein Length = 425 Score = 259 bits (661), Expect = 5e-67, Method: Compositional matrix adjust. Identities = 157/429 (36%), Positives = 227/429 (52%), Gaps = 16/429 (3%) Query: 9 MDAWKRQWQELIQALEQKGADTR-FYAGPPAPESGLAEVELRLGIRLPQELRSLLKEGAG 67 M W +W +L++ LEQ+GA P A L+ VE+RLG+ +P E R +L + Sbjct: 1 MQIWVDRWTQLLKQLEQQGAWIHPLEIKPMATVHELSMVEMRLGVPIPSEFRDVLLHCSR 60 Query: 68 QAYVYWNLPDAALLPFEVS----GELGWDADRLDFFVPPGEEDSGGTQRYLSFHPAGNGD 123 Q VYW+LPD ALLP E+ G+ GW + L+F G+ D+ Q YL FH AGNGD Sbjct: 61 QVGVYWSLPDEALLPIELEDTPLGDFGWSLEELEFPDFGGDSDNAKEQLYLQFHTAGNGD 120 Query: 124 ELLLDLHSASGTAVVHWAHETAEYLLLAPSIMEFIDKITALGCVGAEEWQYPEFCGEAGL 183 LL+ + S V +W+HE EY LLA + +++++ T LGC+GA+ QY +FC E GL Sbjct: 121 ALLIKIEDGS---VWYWSHEGGEYDLLALNFKDYVERATTLGCIGADCGQYLQFCSEGGL 177 Query: 184 DPEKPASRQWMAWLNEYLTLTLAQAQKELPLLLRYAEMFGMSQ-ETAEAFGRYHAEEVLQ 242 D S+ W+ W ++LT T +L LL Y M GM EAF R + EV Sbjct: 178 DLSLTTSQIWLKWFEQFLTSTWENVMYQLDTLLLYVSMHGMKDTRVREAFTRLNTGEVFA 237 Query: 243 AFLERAGQERDSSKKEAILCLAGDALKDKAAEFVRSLWSGTPSLEVSRSTLAYLSAHCLP 302 A + Q R S KE + + +A+ +V +LW L S YL+A+CLP Sbjct: 238 ALQNQIEQSRRLSDKEVWCKVLVEVCATEASHWVMTLWEDQNDLPTSIRD--YLTAYCLP 295 Query: 303 EDEGVERVFRLLEGLAETQKLSGYQANSLLQDFHSRRVIGWMEDKTAFPYGGWDTLFVHS 362 E+ G+ V L+ + + +++ Y A L+ FH+ R I WM+ +FP GWDTL V S Sbjct: 296 EEVGLSLV---LQDIVK-RRIESYTALHRLRHFHNPRTIAWMKRYVSFPIEGWDTLLVES 351 Query: 363 QPAPADIIQWLGGSDVQRQIVIAAFPALYDSTGATFFSAAEIRQIRNLLEQALDEAVLKK 422 QP+ + +WL G +V+RQI I A + G + ++ + +LL D VL+K Sbjct: 352 QPSAETLFEWLNGREVERQIAIRAVCQMLQQ-GIKPTTPVDMEKWLSLLMFWKDNEVLRK 410 Query: 423 EKQAVRDAL 431 KQ AL Sbjct: 411 HKQFFSQAL 419 >Q6R6C3.1 Q6R6C3_LISSE Putative uncharacterized protein Length = 423 Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 101/419 (24%), Positives = 179/419 (42%), Gaps = 37/419 (8%) Query: 23 LEQKGADTRFYAGPPAPESGLAEVELRLGIRLPQELRSLLKEGAGQAYVYWNLPDAALLP 82 L GA T A ++ LAEVE L I LP +L+ +LK + + Y YW L ++P Sbjct: 22 LNNAGARTMLVIDEGATDAQLAEVEKMLDISLPDDLKEILK-LSKKIYWYWTLFGKTIIP 80 Query: 83 --FE-VSGELGWDADRLDFFVPPGEEDSGGTQRYLSFHPAGNGDELLLDLHSASGTAVVH 139 FE + G + + ++FF P + +R L + +G++++ DL S + Sbjct: 81 SDFEQIKGTFSINLEEIEFFTAPLVKIK--VRRLLKIAKSIDGEDIIYDLKEGSIYCFNY 138 Query: 140 WAHETAEYLLLAPSIMEFIDKITALGCVGAEEWQYPEFCGEAGLDPEKPASRQWMAWLNE 199 + ++ + +A S+ +++ + G W Y GL K ++ E Sbjct: 139 YHNQLFQ---MASSLEAYLE--ITIQNKGLAMWNY-------GLIGNKELKESAFQFIRE 186 Query: 200 YLT-LTLAQAQKELPLLLRYAEMFGMSQETAEAFGRYHAEEVLQAFLERAGQ-ERDSSKK 257 +L L L E+ + YA + G + ++ G + E+V + F E + E D + Sbjct: 187 FLKPLVLDPDAVEI---VNYACIHGAEEIISK--GLPNEEDVGRVFTEIMHRLEADLNHF 241 Query: 258 EAILCLAGDALKDKAAEFVRSLWSGTPSLEVSRSTL--AYLSAHCLPEDEGVERVFRLLE 315 + L + A +++ SLW +++ AY + LP E L+ Sbjct: 242 KGYNDLIIELCPAYAKKWIISLWVSKKYEKIADFIYLRAYFTGKALPAKEA-------LK 294 Query: 316 GLAET--QKLSGYQANSLLQDFHSRRVIGWMEDKTAFPYGGWDTLFVHSQPAPADIIQWL 373 ++ET + SG LL +I WM+DK +P G W LF+ SQP + WL Sbjct: 295 LISETIPDRASGKDVYRLLSTIGDSAIIDWMQDKVNYPLGDWVNLFLGSQPTKEQVFSWL 354 Query: 374 GGSDVQRQIVIAAFPAL-YDSTGATFFSAAEIRQIRNLLEQALDEAVLKKEKQAVRDAL 431 G + ++ V A L +S ++ E ++ LL + KK+K+ + A+ Sbjct: 355 EGDIICQETVCLALKNLSKESELLKTYTKEEKMKLFILLLGVNHNCLFKKDKEEIIRAI 413 >O07689.1 O07689_LISSE ORF C protein Length = 423 Score = 87.4 bits (215), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 104/419 (24%), Positives = 178/419 (42%), Gaps = 37/419 (8%) Query: 23 LEQKGADTRFYAGPPAPESGLAEVELRLGIRLPQELRSLLKEGAGQAYVYWNLPDAALLP 82 L GA T A ++ LAEVE L I LP +L+ +LK + + Y YW L ++P Sbjct: 22 LNNAGARTMLVIDEGATDAQLAEVEKMLDISLPDDLKEILK-LSKKIYWYWTLFGKTIIP 80 Query: 83 --FE-VSGELGWDADRLDFFVPPGEEDSGGTQRYLSFHPAGNGDELLLDLHSASGTAVVH 139 FE + G + + ++FF P + +R L + +G++++ DL S + Sbjct: 81 SDFEQIKGTFSINLEEIEFFTAPLVKIK--VRRLLKIAKSIDGEDIIYDLKEGSIYCFNY 138 Query: 140 WAHETAEYLLLAPSIMEFIDKITALGCVGAEEWQYPEFCGEAGLDPEKPASRQWMAWLNE 199 + ++ L S +E +IT + G W Y GL K ++ E Sbjct: 139 YHNQ----LFQTASSLEAYLEIT-IQNKGLAMWNY-------GLIGNKELKESAFQFIRE 186 Query: 200 YLT-LTLAQAQKELPLLLRYAEMFGMSQETAEAFGRYHAEEVLQAFLERAGQ-ERDSSKK 257 +L L L E+ + YA + G + ++ G + E+V + F E + E D + Sbjct: 187 FLKPLVLDPDAVEI---VNYACIHGAEEIISK--GLPNEEDVGRVFTEIMHRLEADLNHF 241 Query: 258 EAILCLAGDALKDKAAEFVRSLWSGTPSLEVSRSTL--AYLSAHCLPEDEGVERVFRLLE 315 + L + A +++ SLW +++ AY + LP E L+ Sbjct: 242 KGYNDLIIELCPAYAKKWIISLWVSKKYEKIADFIYLRAYFTGKALPAKEA-------LK 294 Query: 316 GLAET--QKLSGYQANSLLQDFHSRRVIGWMEDKTAFPYGGWDTLFVHSQPAPADIIQWL 373 ++ET + SG LL +I WM+DK +P G W LF+ SQP + WL Sbjct: 295 LISETIPDRASGKDVYRLLSTIGDSAIIDWMQDKVNYPLGDWVNLFLGSQPTKEQVFSWL 354 Query: 374 GGSDVQRQIVIAAFPAL-YDSTGATFFSAAEIRQIRNLLEQALDEAVLKKEKQAVRDAL 431 G + ++ V A L +S ++ E ++ LL + KK+K+ + A+ Sbjct: 355 EGDIICQETVCLALKNLSKESELLKTYTKEEKMKLFILLLGVNHNCLFKKDKEEIIRAI 413 >C2M554.1 C2M554_CAPGI SMI1/KNR4 family protein Length = 235 Score = 65.9 bits (159), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 51/220 (23%), Positives = 91/220 (41%), Gaps = 37/220 (16%) Query: 8 QMDAWKRQWQELIQALEQKGADTR-FYAGPPAPESGLAEVELRLGIRLPQELRSLLKEGA 66 + +K++ ++ +E G +T PA E + VE +LG LP R +L E Sbjct: 6 NFELFKKRLDLFLEKIEDFGGETDPLTIEKPATEDEIKAVEAQLGYTLPPHFREVLLENT 65 Query: 67 GQAYVYWNL-----------PDAALLPFEVS-------------------GELGWDADRL 96 YW++ + LP E++ GW+ Sbjct: 66 AHLEFYWSIYTDEDEDYEDEENGVFLPDELAEISSGELLFGLDLLLGYEESRKGWEE--- 122 Query: 97 DFFVPPGEEDSGGTQRYLSFHPAGNGDELLLDLHSASGTAVVHWAHETAEY--LLLAPSI 154 D + E ++FH GNGD + ++L + VV+ +H+ +E L +A + Sbjct: 123 DVYPDYNNEYDRVWHNKMAFHQVGNGDYIAIELEPENYGKVVYVSHDGSENHGLYIADNF 182 Query: 155 MEFIDKITALGCVGAEEWQY-PEFCGEAGLDPEKPASRQW 193 EF+ A+GC G+++WQ+ P + G+DP ++ W Sbjct: 183 KEFLMNYAAVGCTGSDDWQWEPFYTKGKGIDPTSKNAKTW 222 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.134 0.405 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,734,946,010 Number of extensions: 119244260 Number of successful extensions: 284605 Number of sequences better than 1.0e-05: 15 Number of HSP's gapped: 284605 Number of HSP's successfully gapped: 15 Length of query: 435 Length of database: 3,060,696,203 Length adjustment: 139 Effective length of query: 296 Effective length of database: 1,751,175,118 Effective search space: 518347834928 Effective search space used: 518347834928 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 133 (55.8 bits)