BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0106.0011.p (177 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K8C3.1 B3K8C3_9BACI Luciferase family protein 216 7e-55 Q65MY1.1 Q65MY1_BACLD Putative uncharacterized protein 202 9e-51 A8FAB6.1 A8FAB6_BACP2 Putative uncharacterized protein 201 2e-50 C2PYI6.1 C2PYI6_BACCE Oxidoreductase 201 2e-50 C3FVV7.1 C3FVV7_BACTB Oxidoreductase 201 3e-50 >B3K8C3.1 B3K8C3_9BACI Luciferase family protein Length = 353 Score = 216 bits (550), Expect = 7e-55, Method: Compositional matrix adjust. Identities = 109/168 (64%), Positives = 126/168 (75%), Gaps = 1/168 (0%) Query: 6 AGSPESAVRAGTLGLPFALAMIGPVQPLDFASQAKLYKEAAARAGHDSSRLPVAAHAHGF 65 G+ ES VRAG LGLP LA+IG PL FA KLYKEAAA AGHD S+LP+ +H+HGF Sbjct: 180 GGNSESVVRAGLLGLPLVLAIIGG-SPLQFAPLVKLYKEAAAHAGHDVSKLPIGSHSHGF 238 Query: 66 IAADTRKAMEQFFPSTYARTNVRAAEKGLPPYHRTDYDAACSLDGALYVGDPERVADKII 125 IA +T A ++FFPST A NV E+G Y R +DAA S +GALYVGDPE VA+KII Sbjct: 239 IAEETELAADKFFPSTQASMNVLGRERGWGYYDRARFDAARSFEGALYVGDPETVAEKII 298 Query: 126 RLRKHVGVTRFLLHVPHGTMPHAEVMEAIRLLGTEVAPRVREEVALWE 173 LRKHVG+TRF+LHVP GTMPH EVM AI LLGTEVAPRVR+E+ WE Sbjct: 299 HLRKHVGITRFMLHVPVGTMPHDEVMRAIELLGTEVAPRVRKEIDRWE 346 >Q65MY1.1 Q65MY1_BACLD Putative uncharacterized protein Length = 351 Score = 202 bits (514), Expect = 9e-51, Method: Compositional matrix adjust. Identities = 102/171 (59%), Positives = 125/171 (73%), Gaps = 1/171 (0%) Query: 6 AGSPESAVRAGTLGLPFALAMIGPVQPLDFASQAKLYKEAAARAGHDSSRLPVAAHAHGF 65 G+ ES VRAG LGLP LA+IG P FA +LY +AA AGHD+S+L VA+H+HGF Sbjct: 180 GGNQESVVRAGLLGLPLVLAIIGG-SPQHFAPLVELYYKAAEHAGHDASKLIVASHSHGF 238 Query: 66 IAADTRKAMEQFFPSTYARTNVRAAEKGLPPYHRTDYDAACSLDGALYVGDPERVADKII 125 IA DT A ++FFPST N A E+G PY R+ +DAA S +GALYVGDPE VA+KII Sbjct: 239 IAEDTETAADRFFPSTQQAMNTLARERGWGPYSRSSFDAARSFEGALYVGDPETVAEKII 298 Query: 126 RLRKHVGVTRFLLHVPHGTMPHAEVMEAIRLLGTEVAPRVREEVALWEKNN 176 LRK+VG+TRFLLHVP G+MPH +VM+AI L GT+ AP VREEV+ WE + Sbjct: 299 HLRKNVGITRFLLHVPVGSMPHEDVMKAIELFGTKTAPLVREEVSRWEASE 349 >A8FAB6.1 A8FAB6_BACP2 Putative uncharacterized protein Length = 350 Score = 201 bits (511), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 100/168 (59%), Positives = 126/168 (75%), Gaps = 1/168 (0%) Query: 6 AGSPESAVRAGTLGLPFALAMIGPVQPLDFASQAKLYKEAAARAGHDSSRLPVAAHAHGF 65 G+ ES VRAG LGLP LA+IG P FA +LYK+AAA AGHD +L VA+H+HGF Sbjct: 180 GGNRESVVRAGLLGLPLVLAIIGG-SPRQFAPLVQLYKQAAAHAGHDPEKLTVASHSHGF 238 Query: 66 IAADTRKAMEQFFPSTYARTNVRAAEKGLPPYHRTDYDAACSLDGALYVGDPERVADKII 125 +A +T A +QFFPST N A E+G PY R+ +DAA +L+GALYVGDP+ VA+K+I Sbjct: 239 VAEETDLAADQFFPSTQHVMNTLARERGWGPYTRSTFDAARTLEGALYVGDPDAVAEKVI 298 Query: 126 RLRKHVGVTRFLLHVPHGTMPHAEVMEAIRLLGTEVAPRVREEVALWE 173 LRK+VG+TRF+LHVP G+MPH +V++AI L G EVAP+VREEVA WE Sbjct: 299 HLRKNVGITRFMLHVPVGSMPHDQVLKAIELFGKEVAPKVREEVARWE 346 >C2PYI6.1 C2PYI6_BACCE Oxidoreductase Length = 357 Score = 201 bits (511), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 100/168 (59%), Positives = 123/168 (73%), Gaps = 1/168 (0%) Query: 6 AGSPESAVRAGTLGLPFALAMIGPVQPLDFASQAKLYKEAAARAGHDSSRLPVAAHAHGF 65 G+ ESA+RAG LGLP LA+IG P+ FA +LYK+AAA AGHD S+L V +H+ GF Sbjct: 180 GGNQESAIRAGFLGLPLMLAIIGG-SPMHFARIVQLYKKAAAHAGHDVSKLQVGSHSIGF 238 Query: 66 IAADTRKAMEQFFPSTYARTNVRAAEKGLPPYHRTDYDAACSLDGALYVGDPERVADKII 125 + +T A + FFPST A N E+G P Y R+ +DAA S GALYVGDP+ VA+KII Sbjct: 239 VGENTELAADTFFPSTQAGMNKLGKERGWPYYDRSSFDAARSFGGALYVGDPDTVAEKII 298 Query: 126 RLRKHVGVTRFLLHVPHGTMPHAEVMEAIRLLGTEVAPRVREEVALWE 173 LRKHVG+TRF+++VP TMPH +VM AI LLGTEVAPRVREE+A WE Sbjct: 299 HLRKHVGITRFMMYVPLSTMPHDQVMRAIELLGTEVAPRVREEIAKWE 346 >C3FVV7.1 C3FVV7_BACTB Oxidoreductase Length = 357 Score = 201 bits (510), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 99/168 (58%), Positives = 123/168 (73%), Gaps = 1/168 (0%) Query: 6 AGSPESAVRAGTLGLPFALAMIGPVQPLDFASQAKLYKEAAARAGHDSSRLPVAAHAHGF 65 G+ ESA+RAG LGLP LA+IG P+ FA +LYK+AAA AGHD S+L V +H+ GF Sbjct: 180 GGNQESAIRAGFLGLPLMLAIIGG-SPMHFARIVQLYKKAAAHAGHDVSKLQVGSHSIGF 238 Query: 66 IAADTRKAMEQFFPSTYARTNVRAAEKGLPPYHRTDYDAACSLDGALYVGDPERVADKII 125 + +T A + FFPST A N E+G P Y R+ +DAA S +GALYVGDP+ VA+KII Sbjct: 239 VGENTELAADTFFPSTQAGMNKLGKERGWPYYDRSSFDAARSFEGALYVGDPDTVAEKII 298 Query: 126 RLRKHVGVTRFLLHVPHGTMPHAEVMEAIRLLGTEVAPRVREEVALWE 173 LRKHVG+TRF+++VP TMPH +VM I LLGTEVAPRVREE+A WE Sbjct: 299 HLRKHVGITRFMMYVPLSTMPHDQVMRTIELLGTEVAPRVREEIAKWE 346 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.134 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,019,775,314 Number of extensions: 38568241 Number of successful extensions: 88745 Number of sequences better than 1.0e-05: 269 Number of HSP's gapped: 88309 Number of HSP's successfully gapped: 269 Length of query: 177 Length of database: 3,060,696,203 Length adjustment: 127 Effective length of query: 50 Effective length of database: 1,864,227,298 Effective search space: 93211364900 Effective search space used: 93211364900 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 126 (53.1 bits)