BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0106.0010.p (185 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C3FVV7.1 C3FVV7_BACTB Oxidoreductase 245 1e-63 C3DCE3.1 C3DCE3_BACTU Oxidoreductase 245 1e-63 C2X4R4.1 C2X4R4_BACCE Oxidoreductase 242 1e-62 Q2BD45.1 Q2BD45_9BACI Oxidoreductase 240 4e-62 Q5WHA7.1 Q5WHA7_BACSK Oxidoreductase 239 1e-61 >C3FVV7.1 C3FVV7_BACTB Oxidoreductase Length = 357 Score = 245 bits (626), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 113/178 (63%), Positives = 136/178 (76%) Query: 1 VELGISTFVETTPDAFTGETMSHAXXXXXXXXXXXXADQVGLDVYGVGEHHRPDFXXXXX 60 +E+GI++FVET PD +GE +SHA ADQVGLDV+GVGEHHR D+ Sbjct: 1 MEIGITSFVETKPDVHSGEVISHAQRLREVVEEIVLADQVGLDVFGVGEHHRKDYAASSP 60 Query: 61 XXXXXXXXXLTSRIRLTSAVMILSSADPVRVFQDFATLDGLSDGRAEIMVGRGSFTESFP 120 T +IRL SAV +LSSADPVRVFQDF+TLDG+S+GRAEIM GRGSF ESFP Sbjct: 61 AMVLSAAAPQTKKIRLASAVSVLSSADPVRVFQDFSTLDGISNGRAEIMAGRGSFIESFP 120 Query: 121 LFGCDLKDYETLFEEKLDLLMKLQQSERVSWEGRHRPAIHNLGIYPRPVQQPLPVWIA 178 LFG +LKDYE LFEE LDLL+K++QSE+V+WEGRHRPAI+NLG+YPRPVQ PLP+W+ Sbjct: 121 LFGYNLKDYEELFEEHLDLLLKIRQSEKVTWEGRHRPAINNLGVYPRPVQNPLPIWVG 178 >C3DCE3.1 C3DCE3_BACTU Oxidoreductase Length = 357 Score = 245 bits (626), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 113/178 (63%), Positives = 136/178 (76%) Query: 1 VELGISTFVETTPDAFTGETMSHAXXXXXXXXXXXXADQVGLDVYGVGEHHRPDFXXXXX 60 +E+GI++FVET PD +GE +SHA ADQVGLDV+GVGEHHR D+ Sbjct: 1 MEIGITSFVETKPDVHSGEVISHAQRLREVVEEIVLADQVGLDVFGVGEHHRKDYAASSP 60 Query: 61 XXXXXXXXXLTSRIRLTSAVMILSSADPVRVFQDFATLDGLSDGRAEIMVGRGSFTESFP 120 T +IRL SAV +LSSADPVRVFQDF+TLDG+S+GRAEIM GRGSF ESFP Sbjct: 61 AMVLSAAAPQTKKIRLASAVSVLSSADPVRVFQDFSTLDGISNGRAEIMAGRGSFIESFP 120 Query: 121 LFGCDLKDYETLFEEKLDLLMKLQQSERVSWEGRHRPAIHNLGIYPRPVQQPLPVWIA 178 LFG +LKDYE LFEE LDLL+K++QSE+V+WEGRHRPAI+NLG+YPRPVQ PLP+W+ Sbjct: 121 LFGYNLKDYEELFEEHLDLLLKIRQSEKVTWEGRHRPAINNLGVYPRPVQNPLPIWVG 178 >C2X4R4.1 C2X4R4_BACCE Oxidoreductase Length = 357 Score = 242 bits (618), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 112/178 (62%), Positives = 135/178 (75%) Query: 1 VELGISTFVETTPDAFTGETMSHAXXXXXXXXXXXXADQVGLDVYGVGEHHRPDFXXXXX 60 +E+GI++FVET PD +GE +SHA ADQVGLDV+GVGEHHR D+ Sbjct: 1 MEIGITSFVETKPDVHSGEVISHAQRLREVVEEIVLADQVGLDVFGVGEHHRKDYAASSP 60 Query: 61 XXXXXXXXXLTSRIRLTSAVMILSSADPVRVFQDFATLDGLSDGRAEIMVGRGSFTESFP 120 T +IRL SAV +LSSADPVRVFQDF+TLDG+S+GRAEIM GRGSF ESFP Sbjct: 61 AMVLSAAAPQTKKIRLASAVTVLSSADPVRVFQDFSTLDGISNGRAEIMAGRGSFIESFP 120 Query: 121 LFGCDLKDYETLFEEKLDLLMKLQQSERVSWEGRHRPAIHNLGIYPRPVQQPLPVWIA 178 LFG DLKDY+ LFEE LDLL+K++QSE+V+WEG HRPAI+NLG+YPRPVQ PLP+W+ Sbjct: 121 LFGYDLKDYDELFEEHLDLLLKIRQSEKVTWEGGHRPAINNLGVYPRPVQNPLPIWVG 178 >Q2BD45.1 Q2BD45_9BACI Oxidoreductase Length = 352 Score = 240 bits (613), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 115/178 (64%), Positives = 132/178 (74%) Query: 1 VELGISTFVETTPDAFTGETMSHAXXXXXXXXXXXXADQVGLDVYGVGEHHRPDFXXXXX 60 +E+GISTFVETTP TGET SHA AD+VGLDV+GVGEHHR D+ Sbjct: 3 MEIGISTFVETTPGVKTGETASHAQRLREVVEEIILADEVGLDVFGVGEHHRKDYAASSP 62 Query: 61 XXXXXXXXXLTSRIRLTSAVMILSSADPVRVFQDFATLDGLSDGRAEIMVGRGSFTESFP 120 T +IRLTSAV +LSSADPVRVFQDFATLDG+S+GRAEIM GRGSF ESFP Sbjct: 63 AVVLAAAAPQTKKIRLTSAVTVLSSADPVRVFQDFATLDGISNGRAEIMAGRGSFIESFP 122 Query: 121 LFGCDLKDYETLFEEKLDLLMKLQQSERVSWEGRHRPAIHNLGIYPRPVQQPLPVWIA 178 LFG DL+DY LF+EKL LL+ LQ+SE+V+W G HRPAI NLG+YPRPVQ PLP+WI Sbjct: 123 LFGYDLQDYNELFDEKLGLLLALQKSEKVTWAGNHRPAIENLGVYPRPVQDPLPIWIG 180 >Q5WHA7.1 Q5WHA7_BACSK Oxidoreductase Length = 349 Score = 239 bits (609), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 123/177 (69%), Positives = 137/177 (77%) Query: 1 VELGISTFVETTPDAFTGETMSHAXXXXXXXXXXXXADQVGLDVYGVGEHHRPDFXXXXX 60 +ELGISTFVETTPD TGET+SHA AD+VGLDV+GVGEHHR D+ Sbjct: 1 MELGISTFVETTPDIKTGETISHAQRLREVVEEIVLADKVGLDVFGVGEHHRQDYAASSP 60 Query: 61 XXXXXXXXXLTSRIRLTSAVMILSSADPVRVFQDFATLDGLSDGRAEIMVGRGSFTESFP 120 T RIRLTSAV +LSSADPVRVFQDFATLDGLS+GRAEIM GRGSF ESFP Sbjct: 61 AVVLAAAASQTKRIRLTSAVTVLSSADPVRVFQDFATLDGLSNGRAEIMAGRGSFIESFP 120 Query: 121 LFGCDLKDYETLFEEKLDLLMKLQQSERVSWEGRHRPAIHNLGIYPRPVQQPLPVWI 177 LFG DL DY+ LFEEKLDLL++LQQSERV+W G+HRPAI NLG+YPRPVQ PLP+WI Sbjct: 121 LFGYDLNDYDELFEEKLDLLLQLQQSERVTWSGKHRPAIQNLGVYPRPVQNPLPIWI 177 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.321 0.138 0.419 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 947,973,567 Number of extensions: 31799783 Number of successful extensions: 90875 Number of sequences better than 1.0e-05: 540 Number of HSP's gapped: 90820 Number of HSP's successfully gapped: 540 Length of query: 185 Length of database: 3,060,696,203 Length adjustment: 127 Effective length of query: 58 Effective length of database: 1,864,227,298 Effective search space: 108125183284 Effective search space used: 108125183284 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 127 (53.5 bits)