BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0106.0009.p (326 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value A3I9A9.1 A3I9A9_9BACI Probable ABC transporter 294 8e-78 A8U6B2.1 A8U6B2_9LACT Probable ABC transporter 293 2e-77 B1HT18.1 B1HT18_LYSSC Probable ABC transporter 289 3e-76 C1P9L0.1 C1P9L0_BACCO Periplasmic binding protein 267 8e-70 A6M1Y3.1 A6M1Y3_CLOB8 Periplasmic binding protein 161 8e-38 >A3I9A9.1 A3I9A9_9BACI Probable ABC transporter Length = 336 Score = 294 bits (752), Expect = 8e-78, Method: Compositional matrix adjust. Identities = 148/299 (49%), Positives = 203/299 (67%), Gaps = 2/299 (0%) Query: 25 TKTVYPLTIENYTNNGEGTEWKAKPQTFDKAPEKVVANTQGAAELLIKLGLTDKMVGVAA 84 TK YPLTIEN+T G+ W+ K Q FDKAPEK++ANT+ AAELL+ LGL DK+VGV A Sbjct: 33 TKEHYPLTIENFTKAEGGSTWEKKDQVFDKAPEKIMANTRPAAELLLHLGLGDKIVGVGA 92 Query: 85 LYGAGDPAVQEEFKKVPVISKEYASKELVVGASPDLVLGRSDLFADADWGSGTVEGLNEL 144 +GA D +V+EE+ K+ ++S EY KE+ +G +PDLV GR LF +A+WG GTV+ LNE+ Sbjct: 93 NFGAVDKSVEEEYSKLNILSDEYVGKEVTLGTNPDLVFGRGGLFDNAEWGVGTVDSLNEM 152 Query: 145 GIKTFVQNTSVKGATLDSLYKDIEQLGQIFDVQENAAAYIAELKERAQSLQDK-AAASGE 203 GIKTFV +S+ G T DS+YKDIE +G+IF+VQ+ A ++I ELK+R Q + K + E Sbjct: 153 GIKTFVLESSITGGTYDSIYKDIENIGKIFNVQDKATSFIKELKDRQQGITSKLESIKEE 212 Query: 204 KTFAYVSDGGNGAIAVYSGNTDTFAGDVLGLLGLKNSFGTITGEISKEQLIATNPDVLLL 263 KTFAY+ + VY + +TF D ++ L N F TG++S E LIA++PDVL+L Sbjct: 213 KTFAYLHTNDPKELFVYPAHDETFFNDAFKMVKLDNIFKDETGDVSVETLIASDPDVLIL 272 Query: 264 SVYTGGIDPEKTLKAFYADPSLQSLKAVKNKTIYTIDFNQFWGYSYSIFDGAEKLVSEI 322 + G D K + YA+P L S+KA+KNK IY +D+N +GY Y+ DG E L E+ Sbjct: 273 PNWDGS-DLTKVREEIYANPKLSSMKAIKNKQIYIVDYNYMFGYGYNTIDGMEALAKEM 330 >A8U6B2.1 A8U6B2_9LACT Probable ABC transporter Length = 346 Score = 293 bits (749), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 148/317 (46%), Positives = 210/317 (66%), Gaps = 10/317 (3%) Query: 10 QAALXXXXTQEAAPSTKTVYPLTIENYTNNGEGTEWKAKPQTFDKAPEKVVANTQGAAEL 69 QA++ T++ S KT +PLT++NYT + EG+ + K T++ +P+ +VAN QG AEL Sbjct: 32 QASMSEQSTEQ---SEKTTFPLTLDNYTASSEGSVFSEKEITYESSPKSIVANNQGTAEL 88 Query: 70 LIKLGLTDKMVGVAALYGAGDPAVQEEFKKVPVISKEYASKELVVGASPDLVLGRSDLFA 129 LI+LGL + +VGVAALYG GD V EEF +PV+S+ Y KELVVG PD+V+GR LFA Sbjct: 89 LIQLGLAEDIVGVAALYGEGDETVTEEFSSIPVLSEGYVGKELVVGTDPDIVVGRGQLFA 148 Query: 130 DADWGSGTVEGLNELGIKTFVQNTSVKGATLDSLYKDIEQLGQIFDVQENAAAYIAELKE 189 +A+WG+GTVE LN+L I+T++Q TS GAT + +Y DI+ LG++F V+E A + ++K Sbjct: 149 NAEWGTGTVEELNDLDIQTYIQATSTTGATFEDIYTDIDHLGKLFTVEEKAQQFSTDIKT 208 Query: 190 RAQ----SLQDKAAASGEKTFAYVSDGGNGAIAVYSGNTDTFAGDVLGLLGLKNSFGTIT 245 R ++ DK A +AY+ + +YSG DT+ D L + L+N+F +T Sbjct: 209 RMDAIVAAIPDKQAT---LDYAYIFGAEGTDVNIYSGAADTYLNDALSYMDLENTFADVT 265 Query: 246 GEISKEQLIATNPDVLLLSVYTGGIDPEKTLKAFYADPSLQSLKAVKNKTIYTIDFNQFW 305 GEIS E L+ +PDVLLL YTGG DP+++L A+ +L SL A+K IYTID+NQFW Sbjct: 266 GEISVEALLEADPDVLLLVNYTGGRDPKESLADLKANDALSSLTAIKEDRIYTIDYNQFW 325 Query: 306 GYSYSIFDGAEKLVSEI 322 Y Y I G E+L +E+ Sbjct: 326 SYGYQILTGMEQLNTEM 342 >B1HT18.1 B1HT18_LYSSC Probable ABC transporter Length = 336 Score = 289 bits (739), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 148/306 (48%), Positives = 205/306 (66%), Gaps = 3/306 (0%) Query: 18 TQEAAPSTKTVYPLTIENYTNNGEGTEWKAKPQTFDKAPEKVVANTQGAAELLIKLGLTD 77 T E A TK YPLTIEN+T G+ W+ K Q FDKAPEK++ANT+ AAELL+ LGL D Sbjct: 27 TSEEA-QTKEHYPLTIENFTKAEGGSTWEKKDQVFDKAPEKIMANTRPAAELLLHLGLGD 85 Query: 78 KMVGVAALYGAGDPAVQEEFKKVPVISKEYASKELVVGASPDLVLGRSDLFADADWGSGT 137 K+VGV A +GA D +V+E + K+ ++S EY KE+ +G +PDLV GR LF +A+WG GT Sbjct: 86 KIVGVGANFGAVDKSVEEAYSKLNILSDEYVGKEVTLGTNPDLVFGRGGLFDNAEWGVGT 145 Query: 138 VEGLNELGIKTFVQNTSVKGATLDSLYKDIEQLGQIFDVQENAAAYIAELKERAQSLQDK 197 V+ LN++GIKTFV +S+ G T DS+YKDIE +G+IF+VQ+ A ++I ELK+R Q + K Sbjct: 146 VDSLNDMGIKTFVLESSITGGTYDSIYKDIENIGEIFNVQDKATSFIKELKDRQQDITSK 205 Query: 198 -AAASGEKTFAYVSDGGNGAIAVYSGNTDTFAGDVLGLLGLKNSFGTITGEISKEQLIAT 256 + EK+FAY+ + VY + +TF D ++ L N F TG++S E LIA+ Sbjct: 206 LESIKEEKSFAYLHTNDPKELFVYPAHDETFFNDAFKMVKLDNIFKDETGDVSVETLIAS 265 Query: 257 NPDVLLLSVYTGGIDPEKTLKAFYADPSLQSLKAVKNKTIYTIDFNQFWGYSYSIFDGAE 316 +PDVL+L + G D K + YA+P L S+KA+KNK IY +D+N +GY Y+ DG E Sbjct: 266 DPDVLILPNWDGS-DLTKVREEIYANPKLSSMKAIKNKQIYIVDYNYMFGYGYNTIDGME 324 Query: 317 KLVSEI 322 L E+ Sbjct: 325 ALAKEM 330 >C1P9L0.1 C1P9L0_BACCO Periplasmic binding protein Length = 335 Score = 267 bits (683), Expect = 8e-70, Method: Compositional matrix adjust. Identities = 133/308 (43%), Positives = 197/308 (63%), Gaps = 3/308 (0%) Query: 20 EAAPSTKTVYPLTIENYTNNGEGTEWKAKPQTFDKAPEKVVANTQGAAELLIKLGLTDKM 79 E +K+ YPLTI NYT GT +K K Q F +AP++V+ T+ AAELL+ LGL DK+ Sbjct: 28 EKNMKSKSNYPLTIHNYTKAEGGTTYKKKDQVFKEAPKRVMVTTRTAAELLLHLGLKDKI 87 Query: 80 VGVAALYGAGDPAVQEEFKKVPVISKEYASKELVVGASPDLVLGRSDLFADADWGSGTVE 139 VGV +GA D +V++++ + ++S Y KE +G +PDL++ R LF +ADWG GTV+ Sbjct: 88 VGVGGNFGAPDKSVEKDYASLKILSNSYVGKEAALGTNPDLIVSRGGLFDNADWGVGTVD 147 Query: 140 GLNELGIKTFVQNTSVKGATLDSLYKDIEQLGQIFDVQENAAAYIAELKERAQSLQDKAA 199 LN++GI T++ +S+ G T DS+YKDI+ LG+IF+VQE A + +LK R + + + + Sbjct: 148 SLNDMGIHTYILESSIPGGTYDSIYKDIDNLGKIFNVQEKAKLFSNKLKARQKKITSELS 207 Query: 200 ASGE-KTFAYVSDGGNGAIAVYSGNTDTFAGDVLGLLGLKNSFGTITGEISKEQLIATNP 258 E KTFAY+ I +YS +TF + G+L LKN F + G +S EQL+ NP Sbjct: 208 GIQETKTFAYLHMSDPKEINIYSAYNETFFNNAFGMLKLKNIFQNVRGTVSVEQLVKANP 267 Query: 259 DVLLLSVYTGGIDPEKTLKAFYADPSLQSLKAVKNKTIYTIDFNQFWGYSYSIFDGAEKL 318 DVL++ + D K KA Y +P L S+KA+KNK +Y +D+N+ +GYSY+ DG E+L Sbjct: 268 DVLIVLNWENNAD--KVKKALYENPKLSSMKAIKNKQVYAMDYNELFGYSYNTLDGIEQL 325 Query: 319 VSEITANQ 326 E+ +Q Sbjct: 326 AKEMYPDQ 333 >A6M1Y3.1 A6M1Y3_CLOB8 Periplasmic binding protein Length = 346 Score = 161 bits (408), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 106/322 (32%), Positives = 178/322 (55%), Gaps = 15/322 (4%) Query: 4 GNRLHLQAALXXXXTQEAAPSTKTVYPLTIENYTNNGEGTEWKAKPQTFDKAPEKVVANT 63 N +L + TQ+A+ S KT YP+T + + + EG +K QTF+ AP+KV+ N Sbjct: 26 ANTNNLSESEKSSNTQKASAS-KTSYPVTFDAF--DSEGKTYK---QTFNDAPKKVITNN 79 Query: 64 QGAAELLIKLGLTDKMVGVAALYGAGDPAVQEEFKKVPVISKE-YASKELVVGASPDLVL 122 Q + ELL+ LGL D ++G L A++++++ + I+K+ A+KE+VVG+ DLV+ Sbjct: 80 QSSTELLLTLGLKDSLIGTGDLDTPIPEALKDDYESIAAIAKKGDAAKEVVVGSGADLVI 139 Query: 123 GRSDLFADADWGSGTVEGLNELGIKTFVQNTSV--KGATLDSLYKDIEQLGQIFDVQENA 180 GR+ F D +GS + LNE+GI T+VQ+ S TLD++ +D+ +G IFDVQ+ A Sbjct: 140 GRAASFKDDKYGS--IPSLNEVGINTYVQSASRMDTNITLDTIIQDVRNVGIIFDVQDKA 197 Query: 181 AAYIAELKERAQSLQDKAAAS-GEKTFAYVSDGGNGAIAVYSGNTDTFAGDVLGLLGLKN 239 + +++ ++ + K + + G + +VY N + ++L +L N Sbjct: 198 NSLADSMQKSLDDIEANVPTNEARKKVIVIVNYGADSFSVYGANA-SLQTEMLNVLNADN 256 Query: 240 SFGTITGEISKEQLIATNPDVLLLSVYTGGIDPE-KTLKAFYADPSLQSLKAVKNKTIYT 298 G S E +I+TNPD ++ T + + ++P+LQ++ A+KNK+I Sbjct: 257 VIEK-GGSGSLENIISTNPDHIIYVTATKNASTDADAVSKILSEPTLQNVTAIKNKSIIC 315 Query: 299 IDFNQFWGYSYSIFDGAEKLVS 320 +D+ +F GY Y FD EKL S Sbjct: 316 VDYTEFMGYGYRTFDCLEKLSS 337 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.311 0.131 0.362 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,930,803,038 Number of extensions: 82719379 Number of successful extensions: 215667 Number of sequences better than 1.0e-05: 627 Number of HSP's gapped: 215177 Number of HSP's successfully gapped: 632 Length of query: 326 Length of database: 3,060,696,203 Length adjustment: 136 Effective length of query: 190 Effective length of database: 1,779,438,163 Effective search space: 338093250970 Effective search space used: 338093250970 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 131 (55.1 bits)