BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0106.0004.p (219 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KC32.1 B3KC32_9BACI Putative uncharacterized protein 324 3e-87 C0Z815.1 C0Z815_BREBN Putative uncharacterized protein 324 4e-87 C3B540.1 C3B540_BACMY Putative uncharacterized protein 321 3e-86 C3AMW0.1 C3AMW0_BACMY Putative uncharacterized protein 321 3e-86 C3BLT8.1 C3BLT8_9BACI Putative uncharacterized protein 319 1e-85 >B3KC32.1 B3KC32_9BACI Putative uncharacterized protein Length = 230 Score = 324 bits (831), Expect = 3e-87, Method: Compositional matrix adjust. Identities = 153/214 (71%), Positives = 174/214 (81%), Gaps = 1/214 (0%) Query: 3 QMILIPAGEVQLRDDRVKTKWTARVDSFWLAPVPVTNALY-DRXXXXXXXXXXXXXXXXN 61 M+ IPAG VQLRDDR+K+ WT V +F LAPVPVT ALY N Sbjct: 12 SMVNIPAGVVQLRDDRIKSSWTVEVPAFQLAPVPVTKALYFSIMPKTSGCDDLMESPAVN 71 Query: 62 VSWNDAILFCNKLSQESGLQECYSISEDGESVSCNWEADGYRLPTEAEWQYACKAGTTGY 121 +SW++AILFCN LS+ GL ECYS+++DGES+ C+ EADGYRLPTEAEWQYACKAG+ GY Sbjct: 72 ISWHEAILFCNMLSRSEGLNECYSVTDDGESLVCDKEADGYRLPTEAEWQYACKAGSLGY 131 Query: 122 QYGELDAVAWYEGNSGGVVHEAGQKLPNAWGLYDMLGNVWEWCWDIYDENVYGSYRIFRG 181 +YGELD +AWYEGNSGGV+HE G+K PNAWGLYDMLGNVWEWCWD+YD NVYGSYR+FRG Sbjct: 132 RYGELDDIAWYEGNSGGVLHEVGKKRPNAWGLYDMLGNVWEWCWDLYDPNVYGSYRVFRG 191 Query: 182 GSWAEEARGCGATCRRRSHPTFHIDDLGFRLARS 215 GSWAEEARGCGATCRRRSHPTF I+DLGFRLARS Sbjct: 192 GSWAEEARGCGATCRRRSHPTFRIEDLGFRLARS 225 >C0Z815.1 C0Z815_BREBN Putative uncharacterized protein Length = 229 Score = 324 bits (830), Expect = 4e-87, Method: Compositional matrix adjust. Identities = 157/212 (74%), Positives = 169/212 (79%), Gaps = 1/212 (0%) Query: 4 MILIPAGEVQLRDDRVKTKWTARVDSFWLAPVPVTNALY-DRXXXXXXXXXXXXXXXXNV 62 M+ IPAG ++LRDDR+K WT V++F LAPVPVTNALY NV Sbjct: 7 MVSIPAGHIELRDDRIKATWTTEVNAFLLAPVPVTNALYFSVVQKAAGPSDHPEAPVVNV 66 Query: 63 SWNDAILFCNKLSQESGLQECYSISEDGESVSCNWEADGYRLPTEAEWQYACKAGTTGYQ 122 SWNDAI FCN LSQ++GL ECYSISEDGE V N EADGYRLPTEAEWQYACKAGT GY+ Sbjct: 67 SWNDAISFCNLLSQQAGLTECYSISEDGERVGWNEEADGYRLPTEAEWQYACKAGTGGYR 126 Query: 123 YGELDAVAWYEGNSGGVVHEAGQKLPNAWGLYDMLGNVWEWCWDIYDENVYGSYRIFRGG 182 YGELD +AWYEGN+ G H GQK PNAWGLYDMLGNVWEWCWD+YD NVYGSYRIFRGG Sbjct: 127 YGELDEIAWYEGNAEGTAHAVGQKQPNAWGLYDMLGNVWEWCWDLYDVNVYGSYRIFRGG 186 Query: 183 SWAEEARGCGATCRRRSHPTFHIDDLGFRLAR 214 SWAEEARGCGATCRRRSHPTF IDDLGFRLAR Sbjct: 187 SWAEEARGCGATCRRRSHPTFRIDDLGFRLAR 218 >C3B540.1 C3B540_BACMY Putative uncharacterized protein Length = 228 Score = 321 bits (822), Expect = 3e-86, Method: Compositional matrix adjust. Identities = 150/215 (69%), Positives = 173/215 (80%), Gaps = 1/215 (0%) Query: 3 QMILIPAGEVQLRDDRVKTKWTARVDSFWLAPVPVTNALY-DRXXXXXXXXXXXXXXXXN 61 QM+ IP GE++LRDDR+K+KW + F LA PVT LY N Sbjct: 14 QMVKIPGGEIELRDDRIKSKWKVEIRPFLLARYPVTMDLYYAITNKSSNSFDGDLKPFVN 73 Query: 62 VSWNDAILFCNKLSQESGLQECYSISEDGESVSCNWEADGYRLPTEAEWQYACKAGTTGY 121 +SWNDAI FCN LSQ++GL+ECYSIS DGE++ CNWE+DGYRLP+EAEWQYACKAGTTGY Sbjct: 74 ISWNDAISFCNLLSQKAGLKECYSISNDGENIICNWESDGYRLPSEAEWQYACKAGTTGY 133 Query: 122 QYGELDAVAWYEGNSGGVVHEAGQKLPNAWGLYDMLGNVWEWCWDIYDENVYGSYRIFRG 181 +YGELD +AWY NSGG +HE G+K PNAWGLYDMLGNVWEWC+D+YDE VYGSYRIFRG Sbjct: 134 RYGELDKIAWYNENSGGKIHEVGRKEPNAWGLYDMLGNVWEWCFDLYDEQVYGSYRIFRG 193 Query: 182 GSWAEEARGCGATCRRRSHPTFHIDDLGFRLARSY 216 GSWAEEARGCGA+CRRRSHPTF+IDDLGFRLARS+ Sbjct: 194 GSWAEEARGCGASCRRRSHPTFYIDDLGFRLARSF 228 >C3AMW0.1 C3AMW0_BACMY Putative uncharacterized protein Length = 228 Score = 321 bits (822), Expect = 3e-86, Method: Compositional matrix adjust. Identities = 150/215 (69%), Positives = 173/215 (80%), Gaps = 1/215 (0%) Query: 3 QMILIPAGEVQLRDDRVKTKWTARVDSFWLAPVPVTNALY-DRXXXXXXXXXXXXXXXXN 61 QM+ IP GE++LRDDR+K+KW + F LA PVT LY N Sbjct: 14 QMVKIPGGEIELRDDRIKSKWKVEIRPFLLARYPVTMDLYYAITNKSSNSFDGDLKPFVN 73 Query: 62 VSWNDAILFCNKLSQESGLQECYSISEDGESVSCNWEADGYRLPTEAEWQYACKAGTTGY 121 +SWNDAI FCN LSQ++GL+ECYSIS DGE++ CNWE+DGYRLP+EAEWQYACKAGTTGY Sbjct: 74 ISWNDAISFCNLLSQKAGLKECYSISNDGENIICNWESDGYRLPSEAEWQYACKAGTTGY 133 Query: 122 QYGELDAVAWYEGNSGGVVHEAGQKLPNAWGLYDMLGNVWEWCWDIYDENVYGSYRIFRG 181 +YGELD +AWY NSGG +HE G+K PNAWGLYDMLGNVWEWC+D+YDE VYGSYRIFRG Sbjct: 134 RYGELDKIAWYNENSGGKIHEVGRKEPNAWGLYDMLGNVWEWCFDLYDEQVYGSYRIFRG 193 Query: 182 GSWAEEARGCGATCRRRSHPTFHIDDLGFRLARSY 216 GSWAEEARGCGA+CRRRSHPTF+IDDLGFRLARS+ Sbjct: 194 GSWAEEARGCGASCRRRSHPTFYIDDLGFRLARSF 228 >C3BLT8.1 C3BLT8_9BACI Putative uncharacterized protein Length = 228 Score = 319 bits (818), Expect = 1e-85, Method: Compositional matrix adjust. Identities = 149/215 (69%), Positives = 173/215 (80%), Gaps = 1/215 (0%) Query: 3 QMILIPAGEVQLRDDRVKTKWTARVDSFWLAPVPVTNALY-DRXXXXXXXXXXXXXXXXN 61 QM+ IP GE++LRDDR+K+KW + F LA PVT LY N Sbjct: 14 QMVKIPGGEIELRDDRIKSKWKVEIRPFLLARYPVTMDLYYAITNKSSNSFDGDLKPFVN 73 Query: 62 VSWNDAILFCNKLSQESGLQECYSISEDGESVSCNWEADGYRLPTEAEWQYACKAGTTGY 121 +SWNDAI FCN LSQ++GL+ECYSIS DGE++ CNWE+DGYRLP+EAEWQYACKAGTTGY Sbjct: 74 ISWNDAISFCNLLSQKAGLKECYSISNDGENIICNWESDGYRLPSEAEWQYACKAGTTGY 133 Query: 122 QYGELDAVAWYEGNSGGVVHEAGQKLPNAWGLYDMLGNVWEWCWDIYDENVYGSYRIFRG 181 +YGELD +AWY NSGG +HE G+K PNAWGLYDMLGNVWEWC+D+YDE VYGSYRIFRG Sbjct: 134 RYGELDKIAWYNENSGGKIHEVGRKEPNAWGLYDMLGNVWEWCFDLYDEQVYGSYRIFRG 193 Query: 182 GSWAEEARGCGATCRRRSHPTFHIDDLGFRLARSY 216 GSWAEEARGCGA+CRRRSHPTF+I+DLGFRLARS+ Sbjct: 194 GSWAEEARGCGASCRRRSHPTFYIEDLGFRLARSF 228 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.136 0.464 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,414,385,129 Number of extensions: 58696305 Number of successful extensions: 94746 Number of sequences better than 1.0e-05: 784 Number of HSP's gapped: 93683 Number of HSP's successfully gapped: 789 Length of query: 219 Length of database: 3,060,696,203 Length adjustment: 130 Effective length of query: 89 Effective length of database: 1,835,964,253 Effective search space: 163400818517 Effective search space used: 163400818517 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 128 (53.9 bits)