BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0106.0003.p (955 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q027K1.1 Q027K1_SOLUE Excinuclease ABC subunit A 922 0.0 C1ADT8.1 C1ADT8_GEMAT UvrABC system protein A 895 0.0 C0EJ87.1 C0EJ87_9CLOT Putative uncharacterized protein 878 0.0 A3DC70.1 A3DC70_CLOTH Excinuclease ABC subunit A 865 0.0 B0K787.1 B0K787_THEP3 Excinuclease ABC, A subunit 865 0.0 >Q027K1.1 Q027K1_SOLUE Excinuclease ABC subunit A Length = 960 Score = 922 bits (2383), Expect = 0.0, Method: Compositional matrix adjust. Identities = 468/962 (48%), Positives = 637/962 (66%), Gaps = 17/962 (1%) Query: 2 SVRTTIEISGAKQNNLKNISVEIPRDQLTVITGVSGSGKSSLAFDVIYGEGQRRFLDSIS 61 + RTTI + GA+ +NLKN+S+ +PRD+L V+TG+SGSGKSSLAFD IY EGQRR+++S+S Sbjct: 7 AARTTIAVQGARVHNLKNVSLTLPRDRLIVVTGLSGSGKSSLAFDTIYAEGQRRYMESLS 66 Query: 62 TFAKSRISQLKKAKVDYVRGLSPVIAIEQKKSNNNPRSTVGTVTDINDYLRLLYATAGVG 121 T+AK ++Q+ K VD+V GLSPVI+IEQK +NPRSTVGT+TDI YL LL+AT Sbjct: 67 TYAKRFVAQVAKPDVDFVFGLSPVISIEQKTIGSNPRSTVGTMTDIASYLNLLFATIAEP 126 Query: 122 RCPECGHSLKQLSAAQIAERISSLPSGTVVELRAPVYKVFGEEYSFTFQQLRDKGYKNLL 181 CP G + +A QI E I +LP GT +ELRAPV+ V+GEE F F ++R KG + L+ Sbjct: 127 HCPRTGERVANRTANQILEAILALPEGTEIELRAPVFPVYGEELEFVFTEVRKKGCRQLV 186 Query: 182 VDGEPFSLAEKRELDETREYHIEMVIDRFQLKKDTYIQLTKSIEAAMLALEEDIMIKVEV 241 +DG LA + +LDET+ ++ V+DRF + + I A +L D +++V++ Sbjct: 187 IDGRRVDLANELDLDETQVRDMDAVVDRFIVSAKHEKAIKAGIAATLLV--GDGLMQVQI 244 Query: 242 PGGVDPS----FYQEFGCPEHHFFLCDMQPFHFSFNSPVSACHTCLGVGMSYVVEPRFLV 297 G + + FY+ HHF ++P F FN+P SAC TC G+G+ + P LV Sbjct: 245 LKGANKAEADRFYKGLCSATHHFTYGGIEPEFFMFNNPESACRTCGGLGIYKITHPELLV 304 Query: 298 VAPEKSISKGALKNTVF--NPAGKDSYRSVLMYSLSQKYHFSLDTPFCDLPKEIHDILFY 355 P++S+ G F NP D++ +MYSLS+ F+LDTP+ LP + Sbjct: 305 PDPKRSVIGGCFVREAFKYNP---DTWDGRVMYSLSKALPFALDTPWEKLPASARHAILN 361 Query: 356 GTKGEVLPMLQPPNST--KKNWMIGRDRPFWGFVHEMESWYKHYIRKNSTSEAFEPAFIK 413 G ++ P++ PP+ +++W G++ F G +E Y+ Y ++ S E ++ Sbjct: 362 GIDRKI-PVVMPPDGKVKREDWQ-GKEVGFGGIARRIERHYRRYRQRGEASSGME-QWLD 418 Query: 414 DCMIEKICPECSGARLKKQRLQVTLGEENIDQLSRKQLPELLHSLETLTFEAEVQDVASS 473 M+E+ CP+C GARL+ RL T+ ++I ++ EL L L D Sbjct: 419 KVMVERTCPDCKGARLRATRLLFTVAGKSIHEVGGLNFDELHGFLGELKPAGRGGDAGRQ 478 Query: 474 IIQEIRTRVSLLIDIGLHYISLNRRSDSISGGEMQRIKMSTQISSELMGMLYVMDEPSIG 533 + +EIR RV LL+ IGL Y++LNRRS ++SGGE QRI++STQI S LMGMLYV+DEPSIG Sbjct: 479 VAREIRGRVELLLGIGLDYLNLNRRSGTLSGGEAQRIRLSTQIGSGLMGMLYVLDEPSIG 538 Query: 534 LHPRDSSRVIDTMKKLRDIGNTVIVVEHDMDTIQSADXXXXXXXXXXXXXXXVVACGTME 593 LHP+D+ ++I T++ LRDIGNTVIVVEHD DTI++AD VV GT+ Sbjct: 539 LHPKDNVKMIATLESLRDIGNTVIVVEHDEDTIRAADHIVEMGPGPGVHGGRVVVEGTLS 598 Query: 594 DIMNEPQSVTGQYLSGKAHIPVPGKRRSLGDDFLSIQGARENNLKNVDLDIPLGVFICIT 653 ++M S TGQ+LSGK I P RR+ L ++GARENNLK+VD+ PLG + IT Sbjct: 599 EVMACKGSPTGQFLSGKRRIATPSARRAGNGKTLIVRGARENNLKSVDVTFPLGTLVAIT 658 Query: 654 GVSGSGKSSLINEILFKQLKIDMTAARMVAGEHDFLFGADLLNNVINIDQTPIGRNSKSN 713 G SGSGKS+LINEIL+K L + R + G+HD + G + ++ V+NIDQ+PIGRNS+SN Sbjct: 659 GASGSGKSTLINEILYKALWKRLVDTRTLPGDHDGIEGGEHVHKVVNIDQSPIGRNSRSN 718 Query: 714 PATYIGIYDKIRDLFASQPEAADRGYQAIDFSLTHAGGTRCEQCAGDGVIVTNLQFMADI 773 PATYIG YD IRDLF P A +RGY+A FS GG RCE+C G+GVI T L FM D+ Sbjct: 719 PATYIGFYDTIRDLFTRTPVAMERGYKAGRFSFNVKGG-RCEECQGEGVITTQLYFMPDV 777 Query: 774 ETICPVCKGQRFSEEGLEIKVHGKSIADVLEMTVEEAREFFSDHKYLKHKLEIMDELGLG 833 E C VCKG RF E LE + GK+I DVL M VEE EFF++ + K+E++++LGLG Sbjct: 778 EVTCAVCKGARFGAETLEATLRGKTITDVLNMPVEEGVEFFANEPAVSKKIEVLNDLGLG 837 Query: 834 YMRLGQSSTTLSGGEAQRVKLAYELSKIKRGARNLYILDEPTTGLHLSDIQKLLLSLGRL 893 Y+ LGQS+TTLSGGEAQR+K+A ELSK++R +YILDEPTTGLHL+D++KLL L RL Sbjct: 838 YLTLGQSATTLSGGEAQRIKIATELSKLQRSKHTVYILDEPTTGLHLADVEKLLECLNRL 897 Query: 894 VDKGHTVIVVEHHLDVMKSADYIIDMGPEGGHQGGYVVAEGTPEQVAQVEASHTGRFLRT 953 VD GHTV+ +EHHLDV+K+AD++ID+GPEGGH GG VVA GTPE++A + S+TGRFL+ Sbjct: 898 VDAGHTVLAIEHHLDVIKTADHVIDLGPEGGHAGGEVVATGTPEKIAACKTSYTGRFLKA 957 Query: 954 VL 955 L Sbjct: 958 HL 959 >C1ADT8.1 C1ADT8_GEMAT UvrABC system protein A Length = 955 Score = 895 bits (2314), Expect = 0.0, Method: Compositional matrix adjust. Identities = 455/960 (47%), Positives = 635/960 (66%), Gaps = 23/960 (2%) Query: 7 IEISGAKQNNLKNISVEIPRDQLTVITGVSGSGKSSLAFDVIYGEGQRRFLDSISTFAKS 66 + + GA+ +NL+N+SVEIPRD+L V+TG+SGSGKSSLAFD IY EGQRR+++S+S+FAK Sbjct: 1 MAVQGARVHNLRNVSVEIPRDRLVVVTGLSGSGKSSLAFDTIYAEGQRRYMESLSSFAKR 60 Query: 67 RISQLKKAKVDYVRGLSPVIAIEQKKSNNNPRSTVGTVTDINDYLRLLYATAGVGRCPEC 126 ++Q+ K VD++ GLSPVI+IEQK +NPRSTVGT+TD+ YL LL+AT G CP Sbjct: 61 FVAQVSKPDVDFIFGLSPVISIEQKTIASNPRSTVGTMTDVASYLNLLFATIGEPHCPRT 120 Query: 127 GHSLKQLSAAQIAERISSLPSGTVVELRAPVYKVFGEEYSFTFQQLRDKGYKNLLVDGEP 186 G + SA+QI E I SLP GT VELRAP++KV+GEE F ++R KG + ++VDG Sbjct: 121 GELVPSRSASQILEAILSLPDGTEVELRAPLFKVYGEELDVVFTEVRKKGCRQVVVDGAT 180 Query: 187 FSLAEKRELDETREYHIEMVIDRFQLKKDTYIQLTKSIEAAMLALEEDIMIKVEVPGGVD 246 LAE+ ELD ++ ++DR +++ L +I AA+L D ++++ + G Sbjct: 181 IDLAEETELDTALVQQMDAIVDRLVVRRRNEKALKAAIGAALLV--GDGLVQIHIIKGRT 238 Query: 247 PS----FYQEFGCPEHHFFLCDMQPFHFSFNSPVSACHTCLGVGMSYVVEPRFLVVAPEK 302 + F+ HF D+ P +F FN+P +AC TC G+G+ + P L+ P++ Sbjct: 239 KAEIAKFHATHSSATQHFIYGDISPEYFQFNNPEAACRTCGGLGVDKLTHPDLLIPDPKR 298 Query: 303 SISKGALKNTVF--NPAGKDSYRSVLMYSLSQKYHFSLDTPFCDLPKEIHDILFYGTKGE 360 SI G + NP D++ +M++LS FSLDTP+ DL + YG + Sbjct: 299 SIRGGCFVREAYRYNP---DTWDGRIMWTLSTLQGFSLDTPWQDLDASARHAVLYGME-R 354 Query: 361 VLPMLQPPNST--KKNWMIGRDR---PFWGFVHEMESWYKHYIRKNSTSEAFEPAFIKDC 415 PP+ST + +W DR F G +E Y+ Y R+ ++ A++ Sbjct: 355 RFRTEAPPDSTVRRADW----DRHEVGFSGIARRIERNYRRY-RQRGEGDSRMEAWLDKV 409 Query: 416 MIEKICPECSGARLKKQRLQVTLGEENIDQLSRKQLPELLHSLETLTFEAEVQDVASSII 475 M+E CP+C G RL+ RL T+ +++ L EL L + I+ Sbjct: 410 MVEHTCPDCRGTRLRATRLLFTVQGQSVHDLGAMHFDELHAFLGRVKPVGRGAGAGQQIL 469 Query: 476 QEIRTRVSLLIDIGLHYISLNRRSDSISGGEMQRIKMSTQISSELMGMLYVMDEPSIGLH 535 EIR R+SLL+ IGL Y+S NRRS ++SGGE QRI++STQI S LMGMLYV+DEPSIGLH Sbjct: 470 DEIRGRLSLLLGIGLDYLSFNRRSGTLSGGESQRIRLSTQIGSGLMGMLYVLDEPSIGLH 529 Query: 536 PRDSSRVIDTMKKLRDIGNTVIVVEHDMDTIQSADXXXXXXXXXXXXXXXVVACGTMEDI 595 P+D++++I T+++LRDIGNTV+VVEHD DT+++AD VV GT++DI Sbjct: 530 PKDNAKMIATLERLRDIGNTVLVVEHDEDTVRAADHIVEMGPGPGVHGGTVVVQGTVQDI 589 Query: 596 MNEPQSVTGQYLSGKAHIPVPGKRRSLGDDFLSIQGARENNLKNVDLDIPLGVFICITGV 655 + S TGQ+LSG I +P KRR L I+GARENNL+NV ++IPLG + ITG Sbjct: 590 LRCKASPTGQFLSGARSIALPEKRRQGTGHSLVIRGARENNLRNVTVEIPLGTLVAITGA 649 Query: 656 SGSGKSSLINEILFKQLKIDMTAARMVAGEHDFLFGADLLNNVINIDQTPIGRNSKSNPA 715 SGSGKS+L+N+IL++ L + R + GEHD + G + ++ V++IDQ+PIGRNS+SNPA Sbjct: 650 SGSGKSTLVNDILYRALWKRLEDTRTLPGEHDGVDGMEHVHKVVSIDQSPIGRNSRSNPA 709 Query: 716 TYIGIYDKIRDLFASQPEAADRGYQAIDFSLTHAGGTRCEQCAGDGVIVTNLQFMADIET 775 TY+G YD IRDLF ++P + +R Y+A FS GG RCE+C G+GVI T + FM D+E Sbjct: 710 TYVGFYDTIRDLFTAEPLSVEREYKAGRFSFNVKGG-RCEECQGEGVITTQMYFMPDVEV 768 Query: 776 ICPVCKGQRFSEEGLEIKVHGKSIADVLEMTVEEAREFFSDHKYLKHKLEIMDELGLGYM 835 IC CKG RF+ E L++ V GK+I DVL M++EEA +FF D + ++++++ LGLGY+ Sbjct: 769 ICGACKGARFNAETLDVTVRGKTIDDVLNMSIEEAVQFFRDEPVIARRVDVLNTLGLGYL 828 Query: 836 RLGQSSTTLSGGEAQRVKLAYELSKIKRGARNLYILDEPTTGLHLSDIQKLLLSLGRLVD 895 +GQS+TTLSGGEAQRVK+A ELSK++R +YILDEPTTGLHL+D+ +LL SL RL D Sbjct: 829 TIGQSATTLSGGEAQRVKIAAELSKLQRTKHTVYILDEPTTGLHLADVVRLLQSLNRLAD 888 Query: 896 KGHTVIVVEHHLDVMKSADYIIDMGPEGGHQGGYVVAEGTPEQVAQVEASHTGRFLRTVL 955 GHTVI++EHHLDV+K+AD++ID+GP+GGH GG +VA+GTPE +A +ASHTGRFLR L Sbjct: 889 SGHTVILIEHHLDVIKTADHVIDLGPDGGHAGGTIVAQGTPEVIASTKASHTGRFLREKL 948 Score = 67.0 bits (162), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 44/138 (31%), Positives = 65/138 (47%), Gaps = 24/138 (17%) Query: 6 TIEISGAKQNNLKNISVEIPRDQLTVITGVSGSGKSSLAFDVIYGEGQRRFLDSISTFAK 65 ++ I GA++NNL+N++VEIP L ITG SGSGKS+L D++Y +R D Sbjct: 620 SLVIRGARENNLRNVTVEIPLGTLVAITGASGSGKSTLVNDILYRALWKRLED------- 672 Query: 66 SRISQLKKAKVDYVRGLSPVIAIEQKKSNNNPRSTVGTVTDINDYLRLLYATAGV----- 120 +R + VD + + V++I+Q N RS T D +R L+ + Sbjct: 673 TRTLPGEHDGVDGMEHVHKVVSIDQSPIGRNSRSNPATYVGFYDTIRDLFTAEPLSVERE 732 Query: 121 ------------GRCPEC 126 GRC EC Sbjct: 733 YKAGRFSFNVKGGRCEEC 750 >C0EJ87.1 C0EJ87_9CLOT Putative uncharacterized protein Length = 942 Score = 878 bits (2268), Expect = 0.0, Method: Compositional matrix adjust. Identities = 444/952 (46%), Positives = 636/952 (66%), Gaps = 14/952 (1%) Query: 4 RTTIEISGAKQNNLKNISVEIPRDQLTVITGVSGSGKSSLAFDVIYGEGQRRFLDSISTF 63 + I I GA+++NLKNI +EIPRDQ V TG+SGSGKSSLAFD IY +GQRR+++S+S++ Sbjct: 3 KNKITIRGAREHNLKNIDLEIPRDQFIVFTGLSGSGKSSLAFDTIYADGQRRYVESLSSY 62 Query: 64 AKSRISQLKKAKVDYVRGLSPVIAIEQKKSNNNPRSTVGTVTDINDYLRLLYATAGVGRC 123 A+ + Q++K VD + GLSP I+I+QK ++ NPRSTVGTVT+I DYLRLLYA G+ C Sbjct: 63 ARQFLGQMEKPDVDDIEGLSPAISIDQKTTSKNPRSTVGTVTEIYDYLRLLYARIGIPHC 122 Query: 124 PECGHSLKQLSAAQIAERISSLPSGTVVELRAPVYKVFGEEYSFTFQQLRDKGYKNLLVD 183 P CG +KQ + QI +++ SLP G+ ++ APV + E+ F+ R G+ + VD Sbjct: 123 PVCGREIKQQTVDQIVDQVLSLPEGSKTQILAPVVRGRKGEHVKEFEAARKSGFVRVRVD 182 Query: 184 GEPFSLAEKRELDETREYHIEMVIDRFQLKKDTYIQLTKSIEAAMLALEEDIMIKVEVPG 243 G + L+E +L++ ++++IE+V+DR +K + +LT S+E A L ++I ++V G Sbjct: 183 GNLYDLSETIQLEKNKKHNIEIVVDRLVIKPEIKSRLTDSLEIAS-NLSGGLVI-IDVIG 240 Query: 244 GVDPSFYQEFGCPEHHFFLCDMQPFHFSFNSPVSACHTCLGVGMSYVVEPRFLVVAPEKS 303 G + F Q + CPEH + ++ P FSFN+P AC C G+G V+P ++ + S Sbjct: 241 GEEILFSQNYACPEHGVSIEELSPRMFSFNNPYGACEKCTGIGTFMEVDPDLIIPNKDLS 300 Query: 304 ISKGALKNTVFNPAGKDSYRSVLMYSLSQKYHFSLDTPFCDLPKEIHDILFYGTKGEVLP 363 I++GA+K + ++ K + ++ LS+ Y FSLDTPF DLPK+ D++ YGTKGE + Sbjct: 301 IAQGAIKASGWSFGDKGTIANMYFEGLSKHYGFSLDTPFKDLPKKAVDVILYGTKGEKIK 360 Query: 364 MLQPPNSTKKNWMIGRDRPFWGFVHEMESWYKHYIRKNSTSEAFEPAFIKDCMIEKICPE 423 M + + ++ + PF G ++ +E YK S SE + I + M CP Sbjct: 361 MTRTNDYGTGSY----NAPFEGIINNLERRYKE-----SNSE-YSKEEIANYMSSVNCPS 410 Query: 424 CSGARLKKQRLQVTLGEENIDQLSRKQLPELLHSLETLTFEAEVQDVASSIIQEIRTRVS 483 C G RLKKQ L VT+G+ENI L+ + +L L+ L +A ++++EIR R+ Sbjct: 411 CHGKRLKKQALAVTVGDENITDLTNLSINGMLDFLDRLELSERDHMIADAVLKEIRERLE 470 Query: 484 LLIDIGLHYISLNRRSDSISGGEMQRIKMSTQISSELMGMLYVMDEPSIGLHPRDSSRVI 543 L +GL Y++L+R S ++SGGE QRI+++TQI S L+G+LY++DEPSIGLH RD+ ++I Sbjct: 471 FLRSVGLDYLTLSRASGTLSGGESQRIRLATQIGSSLVGVLYILDEPSIGLHQRDNDKLI 530 Query: 544 DTMKKLRDIGNTVIVVEHDMDTIQSADXXXXXXXXXXXXXXXVVACGTMEDIMNEPQSVT 603 T+K LRDIGNT+IVVEHD DT+++AD VV GT++D++ SVT Sbjct: 531 ATLKHLRDIGNTLIVVEHDEDTMRAADYIVDIGPGPGIHGGKVVFSGTVDDLIACEDSVT 590 Query: 604 GQYLSGKAHIPVPGKRRSLGDDFLSIQGARENNLKNVDLDIPLGVFICITGVSGSGKSSL 663 GQYLSG+ + +P RR FL+++G ENNLKN+D+ IPLG F C+TGVSGSGKSSL Sbjct: 591 GQYLSGRRKVELPSSRREGNGKFLTVKGCAENNLKNIDVSIPLGTFTCVTGVSGSGKSSL 650 Query: 664 INEILFKQLKIDMTAARMVAGEHDFLFGADLLNNVINIDQTPIGRNSKSNPATYIGIYDK 723 +N IL+K L + AR+ AG+ + G + L+ VI+IDQ+PIGR +SNP TY G+++ Sbjct: 651 VNSILYKYLAAKLNRARLKAGKFSEMLGLEYLDKVIDIDQSPIGRTPRSNPGTYTGVFND 710 Query: 724 IRDLFASQPEAADRGYQAIDFSLTHAGGTRCEQCAGDGVIVTNLQFMADIETICPVCKGQ 783 IR++FA +A RGY A FS GG RCE C GDG++ + F+ DI C VCKGQ Sbjct: 711 IREIFAQTADAKMRGYSAGRFSFNVRGG-RCEACQGDGIVKIEMHFLPDIFVPCEVCKGQ 769 Query: 784 RFSEEGLEIKVHGKSIADVLEMTVEEAREFFSDHKYLKHKLEIMDELGLGYMRLGQSSTT 843 R++ E LE+K GK+I DVLEMTVEE FF + + KL + ++GLGY+++GQ +TT Sbjct: 770 RYNRETLEVKYKGKTIHDVLEMTVEEGMTFFENLPKIHRKLATLFDVGLGYVKIGQPATT 829 Query: 844 LSGGEAQRVKLAYELSKIKRGARNLYILDEPTTGLHLSDIQKLLLSLGRLVDKGHTVIVV 903 LSGGEAQRVKLA ELSK G + +YILDEPTTGLH +D+ L+ L +LVD G+TV+V+ Sbjct: 830 LSGGEAQRVKLATELSKRSTG-KTIYILDEPTTGLHTADVHNLIQVLQKLVDSGNTVLVI 888 Query: 904 EHHLDVMKSADYIIDMGPEGGHQGGYVVAEGTPEQVAQVEASHTGRFLRTVL 955 EH+LDV+K+ADY+ID+GPEGG +GG VVA GTPEQ+A + S+TG++L +L Sbjct: 889 EHNLDVIKTADYLIDLGPEGGDKGGTVVAAGTPEQIAACKESYTGQYLEKLL 940 Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 44/115 (38%), Positives = 69/115 (60%), Gaps = 7/115 (6%) Query: 622 LGDDFLSIQGARENNLKNVDLDIPLGVFICITGVSGSGKSSLINEILF-----KQLKIDM 676 +G + ++I+GARE+NLKN+DL+IP FI TG+SGSGKSSL + ++ + ++ Sbjct: 1 MGKNKITIRGAREHNLKNIDLEIPRDQFIVFTGLSGSGKSSLAFDTIYADGQRRYVESLS 60 Query: 677 TAARMVAGEHDFLFGADL--LNNVINIDQTPIGRNSKSNPATYIGIYDKIRDLFA 729 + AR G+ + D+ L+ I+IDQ +N +S T IYD +R L+A Sbjct: 61 SYARQFLGQMEKPDVDDIEGLSPAISIDQKTTSKNPRSTVGTVTEIYDYLRLLYA 115 >A3DC70.1 A3DC70_CLOTH Excinuclease ABC subunit A Length = 942 Score = 865 bits (2235), Expect = 0.0, Method: Compositional matrix adjust. Identities = 452/949 (47%), Positives = 646/949 (68%), Gaps = 14/949 (1%) Query: 7 IEISGAKQNNLKNISVEIPRDQLTVITGVSGSGKSSLAFDVIYGEGQRRFLDSISTFAKS 66 I + GA+++NLKNI V+IPRD+ VITG+SGSGKSSLAFD IY EGQRR+++S+S++A+ Sbjct: 6 IVVKGAREHNLKNIDVKIPRDKFVVITGLSGSGKSSLAFDTIYAEGQRRYVESLSSYARQ 65 Query: 67 RISQLKKAKVDYVRGLSPVIAIEQKKSNNNPRSTVGTVTDINDYLRLLYATAGVGRCPEC 126 + Q++K VDY+ GLSP IAI+QK ++ NPRSTVGTVT+I DYLRLL+A G C C Sbjct: 66 FLGQMEKPDVDYIDGLSPAIAIDQKTTSRNPRSTVGTVTEIYDYLRLLFARIGTPHCYLC 125 Query: 127 GHSLKQLSAAQIAERISSLPSGTVVELRAPVYKVFGEEYSFTFQQLRDKGYKNLLVDGEP 186 G + Q + Q+ +RI GT ++L APV + EY + ++ +GY + VDGE Sbjct: 126 GREISQQTVDQMVDRIMEFEEGTRIQLLAPVVRGRKGEYHKLIEDIKKEGYVRIRVDGEV 185 Query: 187 FSLAEKRELDETREYHIEMVIDRFQLKKDTYIQLTKSIEAAMLALEEDIMIKVEVPGGVD 246 + + LD+ ++++IE+V+DR ++ +LT SIE +L L I++ V+V GG + Sbjct: 186 VDVNDPVNLDKNKKHNIEIVVDRLIVRPGIQKRLTDSIET-VLRLSNGILV-VDVIGGKE 243 Query: 247 PSFYQEFGCPEHHFFLCDMQPFHFSFNSPVSACHTCLGVGMSYVVEPRFLVVAPEKSISK 306 Q F C E + + ++ P FSFN+P AC C G+G ++P ++ + S+++ Sbjct: 244 MLLSQNFACTECNVSMEEITPRMFSFNNPYGACPECTGLGSLMRIDPDLVIPDKKLSLAQ 303 Query: 307 GALKNTVFNPAGKDSYRSVLMYSLSQKYHFSLDTPFCDLPKEIHDILFYGTKGEVLPMLQ 366 GA++ + +N A +SY + + +L++ Y+FS+DTP +LP I DI+ YGT GE + + Sbjct: 304 GAVRASGWNIANDESYARMYIDALAKHYNFSVDTPVEELPPHILDIILYGTNGEKIKIEY 363 Query: 367 PPNSTKKNWMIGRDRPFWGFVHEMESWYKHYIRKNSTSEAFEPAFIKDCMIEKICPECSG 426 + K +M F G ++ ME YK +TSE + + ++ M CP C G Sbjct: 364 ERENEKGTFMAS----FPGIINSMERRYKE-----TTSEVMK-QYYENFMSNIPCPVCKG 413 Query: 427 ARLKKQRLQVTLGEENIDQLSRKQLPELLHSLETLTFEAEVQDVASSIIQEIRTRVSLLI 486 ARLKK+ L VT+G +NI ++ + E L Q +A I++EI R+ L+ Sbjct: 414 ARLKKESLAVTIGGKNIYEVCCLSIGEAKEFFANLNLTERQQLIARQILKEINARLGFLV 473 Query: 487 DIGLHYISLNRRSDSISGGEMQRIKMSTQISSELMGMLYVMDEPSIGLHPRDSSRVIDTM 546 D+GL Y++L R + ++SGGE QRI+++TQI S LMG++Y++DEPSIGLH RD+ R++ ++ Sbjct: 474 DVGLDYLTLARAAGTLSGGEAQRIRLATQIGSGLMGVIYILDEPSIGLHQRDNDRLLRSL 533 Query: 547 KKLRDIGNTVIVVEHDMDTIQSADXXXXXXXXXXXXXXXVVACGTMEDIMNEPQSVTGQY 606 KKLRD+GNT++VVEHD DT+ ++D +VA GT+E+I P SVTG+Y Sbjct: 534 KKLRDLGNTLLVVEHDEDTMYASDYIIDLGPGAGSHGGQIVAEGTVEEIKQNPNSVTGEY 593 Query: 607 LSGKAHIPVPGKRRSLGDDFLSIQGARENNLKNVDLDIPLGVFICITGVSGSGKSSLINE 666 LSG+ I VP +RR +L I GARENNLKN+++ IPLGVF CITGVSGSGKSSLINE Sbjct: 594 LSGRKKIEVPKERRKPNGKWLEIIGARENNLKNINVRIPLGVFTCITGVSGSGKSSLINE 653 Query: 667 ILFKQLKIDMTAARMVAGEHDFLFGADLLNNVINIDQTPIGRNSKSNPATYIGIYDKIRD 726 IL+K+L ++ A + GEHD + G + L+ VI+IDQ+PIGR +SNPATY G++D IR+ Sbjct: 654 ILYKRLAAELNRASVKPGEHDLIKGIEYLDKVIDIDQSPIGRTPRSNPATYTGVFDFIRE 713 Query: 727 LFASQPEAADRGYQAIDFSLTHAGGTRCEQCAGDGVIVTNLQFMADIETICPVCKGQRFS 786 +FA+ EA RGY+A FS GG RCE CAGDG+ + F+ DI C VCKG+R++ Sbjct: 714 IFANTTEAKTRGYKAGRFSFNVKGG-RCEACAGDGINKIEMHFLPDIYVPCEVCKGKRYN 772 Query: 787 EEGLEIKVHGKSIADVLEMTVEEAREFFSDHKYLKHKLEIMDELGLGYMRLGQSSTTLSG 846 E LE++ GK+IA+VL+MTVEEA EFF + + K+E + ++GLGY++LGQSSTTLSG Sbjct: 773 RETLEVRYKGKNIAEVLDMTVEEALEFFKNIPRIHKKIETLYDVGLGYIKLGQSSTTLSG 832 Query: 847 GEAQRVKLAYELSKIKRGARNLYILDEPTTGLHLSDIQKLLLSLGRLVDKGHTVIVVEHH 906 GEAQRVKLA ELS+ K + +YILDEPTTGLH++D+ +L+ L RLV+ G++V+V+EH+ Sbjct: 833 GEAQRVKLATELSR-KSTGKTMYILDEPTTGLHMADVHRLVGILHRLVEAGNSVVVIEHN 891 Query: 907 LDVMKSADYIIDMGPEGGHQGGYVVAEGTPEQVAQVEASHTGRFLRTVL 955 LDV+K+ADYIID+GPEGG GG VVAEGTPE+VA+VE S+TG+FL+ VL Sbjct: 892 LDVIKTADYIIDLGPEGGSGGGLVVAEGTPEEVAKVENSYTGQFLKKVL 940 Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 45/115 (39%), Positives = 67/115 (58%), Gaps = 13/115 (11%) Query: 625 DFLSIQGARENNLKNVDLDIPLGVFICITGVSGSGKSSLINEILFKQ-----LKIDMTAA 679 D++ ++GARE+NLKN+D+ IP F+ ITG+SGSGKSSL + ++ + ++ + A Sbjct: 4 DYIVVKGAREHNLKNIDVKIPRDKFVVITGLSGSGKSSLAFDTIYAEGQRRYVESLSSYA 63 Query: 680 RMVAGEH-----DFLFGADLLNNVINIDQTPIGRNSKSNPATYIGIYDKIRDLFA 729 R G+ D++ G L+ I IDQ RN +S T IYD +R LFA Sbjct: 64 RQFLGQMEKPDVDYIDG---LSPAIAIDQKTTSRNPRSTVGTVTEIYDYLRLLFA 115 >B0K787.1 B0K787_THEP3 Excinuclease ABC, A subunit Length = 927 Score = 865 bits (2234), Expect = 0.0, Method: Compositional matrix adjust. Identities = 446/953 (46%), Positives = 633/953 (66%), Gaps = 32/953 (3%) Query: 4 RTTIEISGAKQNNLKNISVEIPRDQLTVITGVSGSGKSSLAFDVIYGEGQRRFLDSISTF 63 + I I GA+ +NLKN+ +EIPRD+LTVITG+SGSGKSSLAFD IY EGQRR+++S+S + Sbjct: 3 KDKIVIKGARVHNLKNVDLEIPRDKLTVITGLSGSGKSSLAFDTIYAEGQRRYVESLSAY 62 Query: 64 AKSRISQLKKAKVDYVRGLSPVIAIEQKKSNNNPRSTVGTVTDINDYLRLLYATAGVGRC 123 A+ + Q+ K VDY+ GLSP I+I+QK +N NPRSTVGT+T+I DYLRLLYA AG+ C Sbjct: 63 ARQFLGQMDKPDVDYIEGLSPAISIDQKTTNKNPRSTVGTITEIYDYLRLLYARAGIPHC 122 Query: 124 PECGHSLKQLSAAQIAERISSLPSGTVVELRAPVYKVFGEEYSFTFQQLRDKGYKNLLVD 183 P CG + + Q+ +R+ LP GT +++ APV + EY+ ++ GY + +D Sbjct: 123 PVCGKEISMQTIDQMVDRVKELPEGTRIQVLAPVIRGRKGEYAKLLNDIKKSGYVRVKID 182 Query: 184 GEPFSLAEKRELDETREYHIEMVIDRFQLKKDTYIQLTKSIEAAM-LALEEDIMIKVEVP 242 G + + E+ +LD+ +++ IE+V+DR +K ++LT SIE A+ LA D ++ ++V Sbjct: 183 GVMYDVNEEIKLDKNKKHTIEVVVDRVIIKPGIDMRLTDSIETALKLA---DGIVSIDVI 239 Query: 243 GGVDPSFYQEFGCPEHHFFLCDMQPFHFSFNSPVSACHTCLGVGMSYVVEPRFLVVAPEK 302 G + +++ C E + + ++ P FSFNSP C C G+G V+P L+ P+K Sbjct: 240 DGESFTLSEKYACTECNISIEELSPRMFSFNSPYGVCPVCTGLGEFMKVDPELLIQDPKK 299 Query: 303 SISKGALKNTVFNPAGKDSYRSVLMYSLSQKYHFSLDTPFCDLPKEIHDILFYGTKGEVL 362 S++ G L V A +DSY + L + + ++ +TP+ +++ ++L YG Sbjct: 300 SLANGLLPGIV---ASQDSYAYYNILRLIEHFGYTENTPYEKFSEDLKNVLLYG------ 350 Query: 363 PMLQPPNSTKKNWMIGRDRPFWGFVHEMESWYKHYIRKNSTSEAFEPAFIKDCMIEKICP 422 TK G+ F G V+ +E Y N+TS F I+ M CP Sbjct: 351 ------KDTK-----GKSYGFEGIVNNLERRY------NNTSSDFIKEEIEKYMRPVTCP 393 Query: 423 ECSGARLKKQRLQVTLGEENIDQLSRKQLPELLHSLETLTFEAEVQDVASSIIQEIRTRV 482 C GARLK + L VT+G +I +++ + EL+ +E L + + +A I++EI+ R+ Sbjct: 394 ACHGARLKPEALAVTVGGLSIKEMTDLSVGELIKFIEELKLTEKQEIIAKPILKEIKARL 453 Query: 483 SLLIDIGLHYISLNRRSDSISGGEMQRIKMSTQISSELMGMLYVMDEPSIGLHPRDSSRV 542 + L+D+GL Y++L+R + ++SGGE QRI++++QI S L+G+ Y++DEPSIGLH RD+ R+ Sbjct: 454 NFLVDVGLDYLTLSRPAATLSGGEAQRIRLASQIGSGLVGVTYILDEPSIGLHQRDNERL 513 Query: 543 IDTMKKLRDIGNTVIVVEHDMDTIQSADXXXXXXXXXXXXXXXVVACGTMEDIMNEPQSV 602 I+++KKLRD GNT+IVVEHD DTI +AD +V GT+ED++ +S+ Sbjct: 514 INSLKKLRDQGNTLIVVEHDEDTIYAADYIVDVGPGAGEHGGEIVIAGTIEDVLKCEKSI 573 Query: 603 TGQYLSGKAHIPVPGKRRSLGDDFLSIQGARENNLKNVDLDIPLGVFICITGVSGSGKSS 662 TGQYLSGK I VP +RR L ++GA+ENNLKN+D+ PLGVFIC+TGVSGSGKS+ Sbjct: 574 TGQYLSGKIKIEVPKQRRKPNGKALIVKGAKENNLKNIDVVFPLGVFICVTGVSGSGKST 633 Query: 663 LINEILFKQLKIDMTAARMVAGEHDFLFGADLLNNVINIDQTPIGRNSKSNPATYIGIYD 722 LINEIL+K L + ++ G HD + G D ++ VINIDQ+PIGR +SNPATY G++D Sbjct: 634 LINEILYKALAQKIYKSKDKPGMHDAIEGIDNIDKVINIDQSPIGRTPRSNPATYTGVFD 693 Query: 723 KIRDLFASQPEAADRGYQAIDFSLTHAGGTRCEQCAGDGVIVTNLQFMADIETICPVCKG 782 IR++FA+ PEA RGY+ FS GG RCE C GDG+I + F+ D+ C VCKG Sbjct: 694 YIREVFANTPEAKMRGYKPGRFSFNVKGG-RCEACGGDGIIKIEMNFLPDVYVPCEVCKG 752 Query: 783 QRFSEEGLEIKVHGKSIADVLEMTVEEAREFFSDHKYLKHKLEIMDELGLGYMRLGQSST 842 QR++ E LE+K GK+I+DVL MTVEEA EFF + +K+KL + ++GLGY++LGQ ST Sbjct: 753 QRYNRETLEVKYKGKNISDVLNMTVEEALEFFENIPRIKNKLMTLYDVGLGYIKLGQPST 812 Query: 843 TLSGGEAQRVKLAYELSKIKRGARNLYILDEPTTGLHLSDIQKLLLSLGRLVDKGHTVIV 902 LSGGEAQRVKLA ELSK G + LYILDEPTTGLH +D+ +LL L RL D G+TVIV Sbjct: 813 QLSGGEAQRVKLATELSKRPTG-KTLYILDEPTTGLHFADVHRLLEVLNRLTDAGNTVIV 871 Query: 903 VEHHLDVMKSADYIIDMGPEGGHQGGYVVAEGTPEQVAQVEASHTGRFLRTVL 955 +EH+LD++KSADYIID+GPEGG +GG V+A GTPE+VA E S+TG FL+ VL Sbjct: 872 IEHNLDIIKSADYIIDLGPEGGDKGGRVIATGTPEEVAANENSYTGHFLKKVL 924 Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 56/183 (30%), Positives = 86/183 (46%), Gaps = 42/183 (22%) Query: 622 LGDDFLSIQGARENNLKNVDLDIPLGVFICITGVSGSGKSSLINEILF----KQLKIDMT 677 + D + I+GAR +NLKNVDL+IP ITG+SGSGKSSL + ++ ++ ++ Sbjct: 1 MAKDKIVIKGARVHNLKNVDLEIPRDKLTVITGLSGSGKSSLAFDTIYAEGQRRYVESLS 60 Query: 678 A-ARMVAGEH-----DFLFGADLLNNVINIDQTPIGRNSKSNPATYIGIYDKIRDLFASQ 731 A AR G+ D++ G L+ I+IDQ +N +S T IYD +R L+A Sbjct: 61 AYARQFLGQMDKPDVDYIEG---LSPAISIDQKTTNKNPRSTVGTITEIYDYLRLLYA-- 115 Query: 732 PEAADRGYQAIDFSLTHAGGTRCEQCAGDGVIVTNLQFMAD----------IETICPVCK 781 AG C C G + + + M D I+ + PV + Sbjct: 116 ----------------RAGIPHCPVC-GKEISMQTIDQMVDRVKELPEGTRIQVLAPVIR 158 Query: 782 GQR 784 G++ Sbjct: 159 GRK 161 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.136 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 5,390,999,511 Number of extensions: 227611660 Number of successful extensions: 1026774 Number of sequences better than 1.0e-05: 2392 Number of HSP's gapped: 1016447 Number of HSP's successfully gapped: 5765 Length of query: 955 Length of database: 3,060,696,203 Length adjustment: 146 Effective length of query: 809 Effective length of database: 1,685,228,013 Effective search space: 1363349462517 Effective search space used: 1363349462517 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 136 (57.0 bits)