BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0106.0002.p (304 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C1ADT9.1 C1ADT9_GEMAT Putative uncharacterized protein 165 4e-39 Q027K2.1 Q027K2_SOLUE Putative uncharacterized protein 139 3e-31 Q97GR8.1 Q97GR8_CLOAB Predicted nucleotidyltransferase 60 3e-07 Q891Y9.1 Q891Y9_CLOTE Conserved protein 59 6e-07 A0PZT6.1 A0PZT6_CLONN Conserved protein 58 1e-06 >C1ADT9.1 C1ADT9_GEMAT Putative uncharacterized protein Length = 335 Score = 165 bits (418), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 92/300 (30%), Positives = 161/300 (53%), Gaps = 4/300 (1%) Query: 5 QQAELRARYIAAQDSFISKVSSDPNVIALIVSGSLAYDVIWEKSDIDMTMV-VRDQPLTT 63 Q + A + A D+ I+K+ D +V+A+++ GSLA+D +W++SDID+ +V + D+ + Sbjct: 26 QDSGAPAHFARALDALIAKIREDRSVLAVVLCGSLAHDTVWKRSDIDLVLVTIDDKLVPA 85 Query: 64 TTYCIDEDGILINVYLVVRSTFKRGMERALGGSFHQSYYSKGKMVYSTDDSLIEYFEDLK 123 ++ +D DG+ ++ ++ R+ FKR + AL SF S SKG+++Y+ D+S+ E ++ Sbjct: 86 SSMALDADGVNVHALMLPRAAFKRLADGALSNSFMHSMLSKGRLLYAHDESIAPVLERMR 145 Query: 124 TAGSDDIAISALYIASELVHLRDKARKWLTVRKDXXXXXXXXXXXXESVAHMELCIHGEA 183 G D I L A+E + KARKW R D +A ME+ HG+ Sbjct: 146 VIGGRDTQIQLLAAATEALSCLYKARKWFLTRGDYNYAALWILAAATPMARMEVMRHGQL 205 Query: 184 ISREAIQRAQALNPEVLVPFYQEAMSRHLSAEEIERGLERLDQVLERHLPVFSKPVIEFM 243 RE + RA LNPE+ Y ++ + +ER L + L P F++PV+ ++ Sbjct: 206 SDREVLPRALPLNPELFSVIYTGMLNEPKDRDAVERALTMAESHLLSLAPAFAEPVVRWL 265 Query: 244 RD-EEIKTVTLINKHFH--VQSDQLLGIMDYLVQQGILEKVTQTIRITPKSKRAVEEAGY 300 + E ++ T I+ HF + + + G +YL QG++ + + T R+T KS V+E + Sbjct: 266 AEVTEARSCTEIDAHFARTMGIEHVSGTCEYLADQGLIGRASVTSRLTKKSTADVQELAF 325 >Q027K2.1 Q027K2_SOLUE Putative uncharacterized protein Length = 313 Score = 139 bits (351), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 86/305 (28%), Positives = 149/305 (48%), Gaps = 10/305 (3%) Query: 5 QQAELRARYIAAQDSFISKVSSDPNVIALIVSGSLAYDVIWEKSDIDMTMVVRDQP---- 60 + ++ ++ A + + +V D +++A I+ GSL++D +WEKSDID+ +V D+ Sbjct: 4 KSGSVKEKFSTALSALVERVKLDRSILAAILCGSLSHDTVWEKSDIDLVLVTADEKKRPE 63 Query: 61 LTTTTYCIDEDGILINVYLVVRSTFKRGMERALGGSFHQSYYSKGKMVYSTDDSLIEYFE 120 L + Y DGI ++ L+ R+ F++ E A+ SF S +KG+++Y+ D+++ E Sbjct: 64 LGLSLYA---DGINVHAILMPRAEFRKTAEGAIRNSFQHSMLAKGRLLYTHDETITALCE 120 Query: 121 DLKTAGSDDIAISALYIASELVHLRDKARKWLTVRKDXXXXXXXXXXXXESVAHMELCIH 180 L+ G D + L AS + KA KW R D S+A +E+ Sbjct: 121 QLRAIGERDTQLQLLSAASHALPSVYKANKWFLTRGDLDYTALWILYSANSLARVEVLEA 180 Query: 181 GEAISREAIQRAQALNPEVLVPFYQEAMSRHLSAEEIERGLERLDQVLERHLPVFSKPVI 240 + REA+ A LNP Y + ++ + + ++ L +D L + P PVI Sbjct: 181 RRLLDREALPVAMELNPTFFKTVYTDMLNAKKTVKSVQAALCAIDSYLAKRAPAIFAPVI 240 Query: 241 EFMRD-EEIKTVTLINKHFH--VQSDQLLGIMDYLVQQGILEKVTQTIRITPKSKRAVEE 297 + +R+ E ++ T I +F + G+ +YL QGIL K +R+T S VEE Sbjct: 241 DHLREVREARSATEIENYFERTFGIRGVSGVCEYLADQGILGKAPLPVRLTKNSNIDVEE 300 Query: 298 AGYLY 302 + Y Sbjct: 301 LAFFY 305 >Q97GR8.1 Q97GR8_CLOAB Predicted nucleotidyltransferase Length = 298 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 55/297 (18%), Positives = 133/297 (44%), Gaps = 12/297 (4%) Query: 12 RYIAAQDSFISKVSSDPNVIALIVSGSLAYDVIWEKSDIDMTMVVRDQPLTTTTYCIDED 71 +Y A ++ + + S+ V+A +V GS+ +WE+SDID+ +++ ++ ++++ Sbjct: 7 KYQKAYNTIVKLLKSNEKVLATMVFGSIVSGDLWEESDIDLFVIIDEEMANIKNIYMEQN 66 Query: 72 GILINVYLVVRSTFKRGMERALGGSFHQSYYSKGKMVYSTDDSLIEYFEDLKTAGSDDIA 131 + I++ L+ ++ F E + G F ++ K+V+S D + E ++ + D Sbjct: 67 DVPIHIKLMGKNKFVLLNENDIKGGFFHRIFASSKLVFSKDKDITEKYDSGRYYPDIDRE 126 Query: 132 ISALYIASELVHLRDKARKWLTVRKDXXXXXXXXXXXXESVAHMELCIHGEAISREAIQR 191 + S+L+ +K+L K E + + + G ++++ + Sbjct: 127 KWNMVYISDLLKSLGLCKKYLN-NKRIYTAYYFSVKCVEEFSKLYINHSGYMVNKDDVNM 185 Query: 192 AQALNPEVLVPFYQEAMSRHLSAEEIERGLERLDQVLERHLPVFSKPVIEFMRD------ 245 +N + S+ E I+ ++++++ + +++ + +I++MRD Sbjct: 186 LTNINGDFKNYIDNLFFSKDNVEEAIKEVVDKIEEFINKNIKSITAILIDYMRDKDKSLS 245 Query: 246 -EEIKTVTLINKHFHVQSDQLLGIMDYLVQQGILEKVTQTIRITPKSKRAVEEAGYL 301 E+I T + N F + +++L L + I++K T+ I +E YL Sbjct: 246 AEDINTDPVFN-DFSINFEEILS---KLWEFNIIKKGTRKYSIKDGKALCMENVYYL 298 >Q891Y9.1 Q891Y9_CLOTE Conserved protein Length = 298 Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 51/244 (20%), Positives = 118/244 (48%), Gaps = 24/244 (9%) Query: 17 QDSF---ISKVSSDPNVIALIVSGSLAYDVIWEKSDIDMTMVVRDQPLTTTTYCIDEDGI 73 QD F ++K+ + ++A++V GS+ +W++SDID+ ++ + I+ED I Sbjct: 9 QDVFNRLVNKLKNKDEILAVMVFGSMVTGDLWDESDIDLFVITNENMRGIRNIYIEEDNI 68 Query: 74 LINVYLVVRSTFKRGMERALGGSFHQSYYSKGKMVYSTDDSLIE------YFEDLKTAGS 127 ++V L+ ++TF +++ L G + ++ K+V+S D+ + Y+ D+ Sbjct: 69 SVHVKLMNKNTFVTLVKKNLKGGYVHRIFTSCKLVFSKDNDITNLYDRGRYYPDI----- 123 Query: 128 DDIAISALYIASELVHLRDKARKWLTVRKDXXXXXXXXXXXXESVAHMELCIHGEAISRE 187 D + +Y+++ L + +K+L V E + + + + G IS++ Sbjct: 124 DRERWNMVYLSNSLKSI-GVCKKYL-VNDGTYTAYISVIKAIEEFSKLYVNLSGYMISKD 181 Query: 188 AIQRAQALNPEVLVPFYQEAMSRHLSAEEIERGLERLDQVLERHLPVFSKPV----IEFM 243 AI A +LN + F ++ E+ ++ + + +E ++ + K + +E+M Sbjct: 182 AITMAVSLNND----FKKQVDELFFKRGEVLSNIKNIIKFMEENININIKKITAILLEYM 237 Query: 244 RDEE 247 R+++ Sbjct: 238 REKD 241 >A0PZT6.1 A0PZT6_CLONN Conserved protein Length = 299 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 56/286 (19%), Positives = 130/286 (45%), Gaps = 27/286 (9%) Query: 13 YIAAQDSFISKVSSDPNVIALIVSGSLAYDVIWEKSDIDMTMVVRDQPLTTTTYCIDEDG 72 Y A ++ + + +++A +V GS+ +WE S+ID+ ++ +D+ +E+ Sbjct: 8 YQKAFSKLVNDLKKNDSILAAMVFGSMLTGDLWEGSNIDLFVICKDKIENRGKIYTEENN 67 Query: 73 ILINVYLVVRSTFKRGMERALGGSFHQSYYSKGKMVYSTDDSLI------EYFEDLKTAG 126 I +++ L+ + F + + G F + ++V+S DD + Y+ D+ A Sbjct: 68 IPVHIKLISKEKFLTLYQEEMAGGFIHRLFLSSRLVFSKDDEVTAKYDMGRYYPDIDRAK 127 Query: 127 SDDIAISALYIASELVHLRDKARKWLTVRKDXXXXXXXXXXXXESVAHMELCIHGEAISR 186 + + +S L + E+ ++K+L V E + + + G IS+ Sbjct: 128 WNMVYLSDLLKSIEV------SKKYL-VNNGTYMAYSSAIKALEDFSKLYINYSGYMISK 180 Query: 187 EAIQRAQALNPEVLVPFYQEAMSRHLSAEE------IERGLERLDQVLERHLPVFSKPVI 240 + + A LN E+ +E + + IE+ L+ LD + ++ +S ++ Sbjct: 181 DVMTMATNLNDEL-----RELADKLFFCGQKNMYSIIEKVLKFLDNNINNNIRKYSALLL 235 Query: 241 EFMRDEEIKTVT---LINKHFHVQSDQLLGIMDYLVQQGILEKVTQ 283 EFM++++ + L ++ F + + I++ L + GI++K ++ Sbjct: 236 EFMKEKDCLLSSQDILTDELFKNLNIRFEKILNKLFKNGIVKKKSR 281 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.134 0.375 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,560,280,511 Number of extensions: 57387544 Number of successful extensions: 160619 Number of sequences better than 1.0e-05: 21 Number of HSP's gapped: 160624 Number of HSP's successfully gapped: 21 Length of query: 304 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 169 Effective length of database: 1,788,859,178 Effective search space: 302317201082 Effective search space used: 302317201082 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)