BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0105.0009.p (242 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KEK6.1 B3KEK6_9BACI NAD-dependent epimerase/dehydratase 440 e-122 B1G6J7.1 B1G6J7_9BURK NAD-dependent epimerase/dehydratase 162 3e-38 B0T3P0.1 B0T3P0_CAUSK NAD-dependent epimerase/dehydratase 143 1e-32 Q92T73.1 Q92T73_RHIME Putative sugar epimerase family protein 142 2e-32 C3JYM0.1 C3JYM0_PSEFS Putative uncharacterized protein 142 2e-32 >B3KEK6.1 B3KEK6_9BACI NAD-dependent epimerase/dehydratase Length = 258 Score = 440 bits (1131), Expect = e-122, Method: Compositional matrix adjust. Identities = 208/241 (86%), Positives = 224/241 (92%) Query: 1 VIYRGLQEDGRYDVAGADIQADESQGIVQMDVADEARLAELTQGVDTVLHFAWIKDNEDF 60 VIY+GLQ+D RYD+ GADI+AD+ QGIVQ+D+ DEARLAELTQGVDTVLHFAWIKDN DF Sbjct: 17 VIYKGLQKDSRYDIIGADIEADDRQGIVQLDIVDEARLAELTQGVDTVLHFAWIKDNGDF 76 Query: 61 LGKVLPGNVSGAYKLFEAAVQNGVRRMVFASSNHATGFYKTDEKTEPTDPYRPDSFYGLS 120 LGKVL GNV+GAYKLFEAAVQNGVRRM+FASSNHATG+YK EK EP DPYRPDSFYGLS Sbjct: 77 LGKVLEGNVTGAYKLFEAAVQNGVRRMIFASSNHATGYYKVYEKVEPDDPYRPDSFYGLS 136 Query: 121 KCYIELLGRLYSDQGKISSFNIRIGNFPGDDRPHSERAGHIWISERDMLQLIVCCIEADE 180 KCYIELLGRLYSDQGKISS NIRIGNFPGDDRPHSERAGHIWISERDMLQLIVCCIEAD+ Sbjct: 137 KCYIELLGRLYSDQGKISSINIRIGNFPGDDRPHSERAGHIWISERDMLQLIVCCIEADD 196 Query: 181 GLKYLNLYGTSANSDNYYNIGYLEDLIGYRPQDDATKLLEQAKAAGREVRQDETVYQGGQ 240 L YLNLYGTSAN+DNYYNI YLE+LIGY+PQDDA KLLE AKAAG +VRQDETVYQGGQ Sbjct: 197 KLTYLNLYGTSANTDNYYNIDYLEELIGYKPQDDAAKLLELAKAAGSKVRQDETVYQGGQ 256 Query: 241 E 241 + Sbjct: 257 Q 257 >B1G6J7.1 B1G6J7_9BURK NAD-dependent epimerase/dehydratase Length = 268 Score = 162 bits (410), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 97/234 (41%), Positives = 135/234 (57%), Gaps = 7/234 (2%) Query: 10 GRYDVAGADI----QADESQGIVQMDVADEARLAELTQGVDTVLHFAWIKDNEDFLGKVL 65 G+Y + ADI A E + ++ D+ A L + QGVD V+H A + D ED KV Sbjct: 23 GQYQLRLADIVPQAPAGEGEEVLSADITRLAELLPVMQGVDVVVHLAGVPD-EDRWEKVR 81 Query: 66 PGNVSGAYKLFEAAVQNGVRRMVFASSNHATGFYKTDEKTEPTDPYRPDSFYGLSKCYIE 125 N+ G Y +FEAA Q GV+R+VFASSNHA GF++ D + T RPDS YG+SK + E Sbjct: 82 DLNIEGCYNVFEAARQAGVKRVVFASSNHAVGFHRRDRMIDDTVAPRPDSRYGVSKVFGE 141 Query: 126 LLGRLYSDQGKISSFNIRIGNFPGDDRPHSERAGHIWISERDMLQLIVCCIEADEGLKYL 185 LGR+Y+D+ +S +RIG+F DD P R WIS RD +QL CI+ + +L Sbjct: 142 ALGRMYADKHGLSVACMRIGSFRPDDTPTEPRHLFTWISHRDTVQLTKRCIDYPD-YHFL 200 Query: 186 NLYGTSANSDNYYNIGYLEDLIGYRPQDDATKLLEQAKAAGREVRQDETVYQGG 239 +YG S N+ N ++ L L GY PQDDA + ++G+E E ++ GG Sbjct: 201 IVYGVSGNARNRWDNANLRRL-GYAPQDDAELHAARIASSGKEEDPREALFHGG 253 >B0T3P0.1 B0T3P0_CAUSK NAD-dependent epimerase/dehydratase Length = 273 Score = 143 bits (361), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 79/210 (37%), Positives = 120/210 (57%), Gaps = 6/210 (2%) Query: 21 ADESQGIVQMDVADEARLAELTQGVDTVLHFAWIKDNEDFLG--KVLPGNVSGAYKLFEA 78 A + + VQ D+ D L G+DTV+H A + + +VLP N+ G + LFEA Sbjct: 43 AGQGEEAVQADLLDIPSLVAAMTGIDTVVHMAGVPVEPETHAWDQVLPANIVGVHNLFEA 102 Query: 79 AVQNGVRRMVFASSNHATGFYKTDEKTEPTDPYRPDSFYGLSKCYIELLGRLYSDQGKIS 138 A GV+R++FASS+HA GF++ D T T RPDS+YG+SK + E +GR+Y+D+ + Sbjct: 103 ARLAGVKRVLFASSHHAAGFHRRDTPTAETMVPRPDSYYGVSKVFGEAMGRMYADKFGLQ 162 Query: 139 SFNIRIGNFPGDDRPHSERAGHIWISERDMLQLIVCCIEADEGLKYLNLYGTSANSDNYY 198 ++RIG + +RP R +WIS RDM++L+ C IEA + Y +YG S N+ ++ Sbjct: 163 VLSLRIGAY--RERPSDPRQLAVWISPRDMVELVRCGIEAPD-FGYATVYGVSNNARKFW 219 Query: 199 NIGYLEDLIGYRPQDDATKLLEQAKAAGRE 228 + +GY P D+A + A G E Sbjct: 220 D-NSAAAFLGYAPVDNAEDWAAEVLAGGVE 248 >Q92T73.1 Q92T73_RHIME Putative sugar epimerase family protein Length = 261 Score = 142 bits (359), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 83/221 (37%), Positives = 126/221 (57%), Gaps = 6/221 (2%) Query: 21 ADESQGIVQMDVADEARLAELTQGVDTVLHFAWIKDNEDFLGKVLPGNVSGAYKLFEAAV 80 A E + IV+ D+A+ + +L +G D +LH I DF +L N+ G Y L+EAA Sbjct: 40 AGEGEEIVRCDLAEREAVDQLVRGCDAILHLGAISVESDF-DALLQANILGTYNLYEAAR 98 Query: 81 QNGVRRMVFASSNHATGFYKTDEKTEPTDPYRPDSFYGLSKCYIELLGRLYSDQGKISSF 140 + GV R++FAS+NH TGF+ E + P RPDS YG+SKC+ E L RLY D+ + + Sbjct: 99 KAGVNRILFASTNHVTGFHPIGETLDHLSPRRPDSLYGVSKCFGEDLSRLYFDKYGMETA 158 Query: 141 NIRIGNFPGDDRPHSERAGHIWISERDMLQLIVCCIEADEGLKYLNLYGTSANSDNYYNI 200 +RIG+ + P + R W+S RD L L+ ++A + + +L LYG SAN D +++ Sbjct: 159 CLRIGSCFAE--PTNRRMLSTWLSPRDFLALVRRLLDAPK-IGHLVLYGVSANRDVWWSN 215 Query: 201 GYLEDLIGYRPQDDATKLLEQAKAAGREVRQDETVYQGGQE 241 G+ D +G+RPQD + + + E D YQGG+ Sbjct: 216 GH-ADFLGWRPQDSSEPYRHEIEKREEEP-SDGVRYQGGRH 254 >C3JYM0.1 C3JYM0_PSEFS Putative uncharacterized protein Length = 272 Score = 142 bits (359), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 86/229 (37%), Positives = 127/229 (55%), Gaps = 8/229 (3%) Query: 13 DVAGADIQADESQGIVQMDVADEARLAELTQGVDTVLHFAWIKDNEDFLGKVLPGNVSGA 72 D+A AD S+ + D+AD+ + +L +GVD +LHF + F +VL N+SG Sbjct: 40 DIANMAPAADASEEVHTCDLADKHAVHQLVEGVDAILHFGGVSVERSF-EEVLGANISGI 98 Query: 73 YKLFEAAVQNGVRRMVFASSNHATGFYKTDEKTEPTDPYRPDSFYGLSKCYIELLGRLYS 132 + ++EAA ++GV+R++FASSNH GFYK EK + P RPDS+YGLSK Y E + Y Sbjct: 99 FHIYEAARRHGVKRVIFASSNHVIGFYKQGEKIDAHSPRRPDSYYGLSKSYGEDMASFYF 158 Query: 133 DQGKISSFNIRIG-NFPGDDRPHSERAGHIWISERDMLQLIVCCIEADEGLKYLNLYGTS 191 D+ I + +IRIG +FP P + R H W+S D+ QL+ + + + +YG S Sbjct: 159 DRYGIETVSIRIGSSFP---EPQNRRMMHTWLSFDDLTQLLERALYT-PNVGHTVVYGMS 214 Query: 192 ANSDNYYNIGYLEDLIGYRPQDDATKLLEQAKAAGREVRQDET-VYQGG 239 N D +++ Y L GY P+D + Q + D VYQGG Sbjct: 215 DNLDTWWDNRYAAHL-GYAPKDSSEVFRAQVETQPPVAADDPAKVYQGG 262 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.317 0.137 0.404 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,549,107,860 Number of extensions: 66166708 Number of successful extensions: 147695 Number of sequences better than 1.0e-05: 217 Number of HSP's gapped: 147974 Number of HSP's successfully gapped: 217 Length of query: 242 Length of database: 3,060,696,203 Length adjustment: 132 Effective length of query: 110 Effective length of database: 1,817,122,223 Effective search space: 199883444530 Effective search space used: 199883444530 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 129 (54.3 bits)