BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0105.0007.p (233 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1DHF0.1 B1DHF0_9BACL Transcriptional regulator, AraC family 155 3e-36 C0ZE15.1 C0ZE15_BREBN Probable transcriptional regulator 154 8e-36 Q28LL3.1 Q28LL3_JANSC Transcriptional regulator, AraC family 86 3e-15 B4B1U3.1 B4B1U3_9CHRO Transcriptional regulator, AraC family 84 1e-14 Q2K8L3.1 Q2K8L3_RHIEC Probable transcriptional regulator protein... 82 5e-14 >B1DHF0.1 B1DHF0_9BACL Transcriptional regulator, AraC family Length = 266 Score = 155 bits (391), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 91/217 (41%), Positives = 124/217 (57%), Gaps = 21/217 (9%) Query: 24 PNILFRLELXXXSAVIVIKFRG-------SLLNHKAPGDSQEYRLARDFNPKEITALFRS 76 P L S+VI+IK R SL H G Q+ R ++F+ ++ FR Sbjct: 61 PGTEHHFYLGEQSSVIIIKVRERGDGGMESLQPHFMAGAGQDIR--QEFHTGDMMGRFRQ 118 Query: 77 WSYELLGNET--DSLMVQQMEFQVQLYLERLLQ-GEGESDRPGLQNSVSRPYTSDPHMTR 133 W L+ + D + VQ++E V YL +L+ G+ E PG+ +DPH+ R Sbjct: 119 WMMALIEGQALADPIAVQEVEQDVVAYLGGMLKLGQKELLPPGI---------NDPHIRR 169 Query: 134 VLDYLHSCYMTAVDIESMAAIALQSRYHFIRSFKQLTQFTPYQYVLRLRINEAGKRLRLS 193 L YLH CY ++IE +A IALQSRYHFIRSF++ T TPYQY+LRLRI EA RLR S Sbjct: 170 ALTYLHDCYDHTINIEELAGIALQSRYHFIRSFREATGTTPYQYLLRLRITEAMNRLRRS 229 Query: 194 EESVTDISFSLGFSSVTQFYRTFLRLKGMTPTQYRKR 230 ++ IS LGFSS +QF+R FL++ G+TP YR + Sbjct: 230 GATIGQISVDLGFSSTSQFHRAFLKMTGVTPQAYRHQ 266 >C0ZE15.1 C0ZE15_BREBN Probable transcriptional regulator Length = 268 Score = 154 bits (388), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 87/201 (43%), Positives = 124/201 (61%), Gaps = 3/201 (1%) Query: 30 LELXXXSAVIVIKFRGSLLNHKAPGDSQEYRLARDFNPKEITALFRSWSYELLGNET-DS 88 E+ S V++ K + L + E+ + + F+PK + FR+W+ LL +T D Sbjct: 67 FEIGSQSGVLIFKVNQNSLKELTGQEEFEFAVLQKFDPKFMREKFRNWTNALLTCDTADR 126 Query: 89 LMVQQMEFQVQLYLERLLQGEGESDRPGLQNSVSRPYTSDPHMTRVLDYLHSCYMTAVDI 148 L +++E QV YL L G ++D P + Y SDP + +VL+Y+H Y + + Sbjct: 127 LAQEELESQVLFYLLGALAGNHKND-PNPTVRIPAHY-SDPQLGKVLEYIHENYRNDIRV 184 Query: 149 ESMAAIALQSRYHFIRSFKQLTQFTPYQYVLRLRINEAGKRLRLSEESVTDISFSLGFSS 208 +++A +ALQSRYHFIRSFK + TPYQYVL LR+ EA + L+ S SVT ISFSLGFSS Sbjct: 185 DTLAFMALQSRYHFIRSFKAMMGVTPYQYVLLLRMEEAKRLLKRSIHSVTKISFSLGFSS 244 Query: 209 VTQFYRTFLRLKGMTPTQYRK 229 V+QF RTF++ GMTPTQ+R Sbjct: 245 VSQFQRTFVKTVGMTPTQFRN 265 >Q28LL3.1 Q28LL3_JANSC Transcriptional regulator, AraC family Length = 299 Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 57/198 (28%), Positives = 94/198 (47%), Gaps = 23/198 (11%) Query: 47 LLNHKAP-GDSQEYRLARDFNPKEITALFRS--------------WSYELLGNETDSLMV 91 +LN P ++QE L+ F+ AL+ W+ G ++L V Sbjct: 107 MLNVSLPISNAQELLLSAGFDTDPFCALYGHMSDHPRGLLLMKTMWNAMKNGGPANNLAV 166 Query: 92 QQMEFQVQLYLERLLQGEGESDRPGLQNSVSRPYTSDPHMTRVLDYLHSCYMTAVDIESM 151 Q+ L +++G G + ++ V P ++P + RV+DY+ + Y ++ + Sbjct: 167 DAALIQLML---TMIEGAGLA-----EHLVPPPQLANPQLARVIDYIETYYHASLLTSEL 218 Query: 152 AAIALQSRYHFIRSFKQLTQFTPYQYVLRLRINEAGKRLRLSEESVTDISFSLGFSSVTQ 211 AAIA S HF R FK T +P+ YV+ R+ A LR + ++T I+++ GFSS Sbjct: 219 AAIAAMSTVHFGRCFKTATGASPHAYVMGRRVEHAKYMLRDATLNITQIAYACGFSSAAH 278 Query: 212 FYRTFLRLKGMTPTQYRK 229 F F G+TP+ YRK Sbjct: 279 FSTVFKAQVGITPSAYRK 296 >B4B1U3.1 B4B1U3_9CHRO Transcriptional regulator, AraC family Length = 298 Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 36/97 (37%), Positives = 64/97 (65%) Query: 134 VLDYLHSCYMTAVDIESMAAIALQSRYHFIRSFKQLTQFTPYQYVLRLRINEAGKRLRLS 193 V DY+H + + ++++IA S+YHF R+FK++T TP+QYV+R R+ A + L S Sbjct: 202 VFDYIHEFLSQDISLSTLSSIANMSQYHFSRTFKEMTGLTPHQYVIRQRVERAKQLLLQS 261 Query: 194 EESVTDISFSLGFSSVTQFYRTFLRLKGMTPTQYRKR 230 + S+ D++ + GF+ + +R F RL G+TP+ +R++ Sbjct: 262 KMSINDVAIACGFTHQSHLHRHFKRLIGVTPSAFREK 298 >Q2K8L3.1 Q2K8L3_RHIEC Probable transcriptional regulator protein, AraC family Length = 295 Score = 81.6 bits (200), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 39/109 (35%), Positives = 63/109 (57%), Gaps = 1/109 (0%) Query: 121 VSRPYTSDPH-MTRVLDYLHSCYMTAVDIESMAAIALQSRYHFIRSFKQLTQFTPYQYVL 179 +R T DP + RV D++ + + ++ +AA A S +HF R F++ T TP++YV Sbjct: 182 AARAPTVDPKRLQRVFDFIEARIAAEISLDDLAAEACLSPFHFARMFRKATGLTPHRYVT 241 Query: 180 RLRINEAGKRLRLSEESVTDISFSLGFSSVTQFYRTFLRLKGMTPTQYR 228 RI A ++LRL+ S+ +I+ GF S F R F ++ G+TP Q+R Sbjct: 242 ERRIEAAKEKLRLARSSLAEIALDTGFGSQANFTRVFRKMTGLTPGQFR 290 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.324 0.137 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,252,846,318 Number of extensions: 45261760 Number of successful extensions: 139406 Number of sequences better than 1.0e-05: 2698 Number of HSP's gapped: 139970 Number of HSP's successfully gapped: 2698 Length of query: 233 Length of database: 3,060,696,203 Length adjustment: 131 Effective length of query: 102 Effective length of database: 1,826,543,238 Effective search space: 186307410276 Effective search space used: 186307410276 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 129 (54.3 bits)