BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0105.0004.p (279 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K4S4.1 B3K4S4_9BACI Binding-protein-dependent transport system... 361 4e-98 B3KDP8.1 B3KDP8_9BACI Binding-protein-dependent transport system... 337 5e-91 A6CLU7.1 A6CLU7_9BACI Multiple sugar-binding transport system pe... 292 2e-77 Q2BAB3.1 Q2BAB3_9BACI Multiple sugar-binding transport system pe... 288 3e-76 C4L2X2.1 C4L2X2_EXISA Binding-protein-dependent transport system... 284 5e-75 >B3K4S4.1 B3K4S4_9BACI Binding-protein-dependent transport systems inner membrane component Length = 278 Score = 361 bits (927), Expect = 4e-98, Method: Compositional matrix adjust. Identities = 172/279 (61%), Positives = 210/279 (75%), Gaps = 1/279 (0%) Query: 1 METTAKKFNVPXXXXXXXXXXXXXXXXVPFYFLLANSVKSYSEILSDSSALPTVFQWNNY 60 METT +K+ + VPFYFL NSVK++ E+L+DS+ LPT F+W+NY Sbjct: 1 METT-RKYRLNTMATEIIMVIVALLFLVPFYFLFVNSVKTFGELLTDSAGLPTTFEWSNY 59 Query: 61 AEAWKATDFPHAFXXXXXXXXXXXXXXAFLCSMCAYKMVRNNSRYNRILYVALVAAMVIP 120 + AW T+FP AF A L +M AY+MVR N+R+N+I++ VAAMVIP Sbjct: 60 SRAWDITNFPQAFWNSLVVTVASNLLLAMLSAMTAYQMVRRNTRFNQIMFALFVAAMVIP 119 Query: 121 FQAIMIPLVQIVSRLGVMDSTAGLILAYLGFGAPMTVFLLHGFVKSVPIDIEEASRVDGS 180 FQ+IMIPLV++ + LG+ +S GLI+ YLGFG P++VFL HGFVKS+P++IEEA+ VDGS Sbjct: 120 FQSIMIPLVKVTATLGINNSLYGLIICYLGFGVPLSVFLFHGFVKSIPMEIEEAATVDGS 179 Query: 181 SPYGTFFRVVLPLMQPIIVTVIILNTLWIWNDYLMPSLILQSPALRTIPIATYTFFGQYT 240 S YG FFRVV PLM+P+ VTVIILNTLWIWNDYL+PSLILQS LRTIPIAT+ FFGQYT Sbjct: 180 SGYGVFFRVVFPLMKPMFVTVIILNTLWIWNDYLLPSLILQSAELRTIPIATFAFFGQYT 239 Query: 241 KQWDLALPGLVLGITPVVLFFLLMQKYIIEGIAQGSVKG 279 KQWDLALP LVLGI PV+LFFL MQKYIIEGI QG+VKG Sbjct: 240 KQWDLALPALVLGIMPVILFFLAMQKYIIEGITQGAVKG 278 >B3KDP8.1 B3KDP8_9BACI Binding-protein-dependent transport systems inner membrane component Length = 279 Score = 337 bits (865), Expect = 5e-91, Method: Compositional matrix adjust. Identities = 151/251 (60%), Positives = 203/251 (80%) Query: 29 PFYFLLANSVKSYSEILSDSSALPTVFQWNNYAEAWKATDFPHAFXXXXXXXXXXXXXXA 88 PFYFLL NSVKS +I+ D++ PT F ++NY++AW+ T FP AF A Sbjct: 29 PFYFLLVNSVKSLGDIMVDAANWPTAFHFDNYSKAWEMTRFPEAFTNSIIITVISNLIIA 88 Query: 89 FLCSMCAYKMVRNNSRYNRILYVALVAAMVIPFQAIMIPLVQIVSRLGVMDSTAGLILAY 148 L +M AY+MVR+N+R+NRI+++ V+AMVIPFQ+IMIPL+Q+++ LGV +S GLIL+Y Sbjct: 89 LLSAMAAYRMVRSNTRFNRIVFMLFVSAMVIPFQSIMIPLLQVINFLGVNNSIVGLILSY 148 Query: 149 LGFGAPMTVFLLHGFVKSVPIDIEEASRVDGSSPYGTFFRVVLPLMQPIIVTVIILNTLW 208 LG G P++VFL HGFVK +P++IEEA+ VDG+SP+ F R+V+P+++P++VTVIILN LW Sbjct: 149 LGLGIPLSVFLFHGFVKGIPLEIEEAATVDGASPFRVFARIVMPMLKPMMVTVIILNCLW 208 Query: 209 IWNDYLMPSLILQSPALRTIPIATYTFFGQYTKQWDLALPGLVLGITPVVLFFLLMQKYI 268 +WNDYL+PSLILQSP LRTIP+AT+ FFGQY+KQWD+ALP LVLGITP+++FFL +QKYI Sbjct: 209 VWNDYLLPSLILQSPELRTIPLATFAFFGQYSKQWDMALPALVLGITPIIIFFLSLQKYI 268 Query: 269 IEGIAQGSVKG 279 +EG+A GSVKG Sbjct: 269 VEGVAAGSVKG 279 >A6CLU7.1 A6CLU7_9BACI Multiple sugar-binding transport system permease Length = 275 Score = 292 bits (748), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 134/251 (53%), Positives = 186/251 (74%) Query: 28 VPFYFLLANSVKSYSEILSDSSALPTVFQWNNYAEAWKATDFPHAFXXXXXXXXXXXXXX 87 +PFYF+L NSVK ++ IL D++A P F ++NYA+ W+ +FP AF Sbjct: 25 IPFYFVLVNSVKPFAAILIDAAAWPKEFLFSNYAKVWEIINFPRAFWNSLVITVFSNIGL 84 Query: 88 AFLCSMCAYKMVRNNSRYNRILYVALVAAMVIPFQAIMIPLVQIVSRLGVMDSTAGLILA 147 + SM A+KMVR ++++IL++ V+AMVIPFQ +MIPL+++ L + +S GLI+ Sbjct: 85 VIISSMAAWKMVRTPGKFSKILFIIFVSAMVIPFQTVMIPLMKLGGALNLTNSIPGLIIM 144 Query: 148 YLGFGAPMTVFLLHGFVKSVPIDIEEASRVDGSSPYGTFFRVVLPLMQPIIVTVIILNTL 207 Y GFG P+++FL HGFVK+VP++IEE++ +DG S +G F+R+V PL++PI VTVIILNTL Sbjct: 145 YFGFGVPLSLFLFHGFVKTVPMEIEESAMIDGCSQFGVFWRIVFPLLKPITVTVIILNTL 204 Query: 208 WIWNDYLMPSLILQSPALRTIPIATYTFFGQYTKQWDLALPGLVLGITPVVLFFLLMQKY 267 WIWNDYL+P L+LQ LRTIP+A +FF QYTKQWD+ L LVLGITPV++FFL +QK+ Sbjct: 205 WIWNDYLLPLLVLQDAELRTIPLAASSFFAQYTKQWDMGLAALVLGITPVIIFFLFLQKH 264 Query: 268 IIEGIAQGSVK 278 II+GIA GS+K Sbjct: 265 IIKGIASGSIK 275 >Q2BAB3.1 Q2BAB3_9BACI Multiple sugar-binding transport system permease Length = 275 Score = 288 bits (738), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 133/250 (53%), Positives = 184/250 (73%) Query: 29 PFYFLLANSVKSYSEILSDSSALPTVFQWNNYAEAWKATDFPHAFXXXXXXXXXXXXXXA 88 PFYF+ NSVKS++EIL D++A P + NY++ W+ +FP AF Sbjct: 26 PFYFVAVNSVKSFAEILLDAAAFPKEVLFANYSKVWEIINFPRAFWNSLIITVLSNIGLV 85 Query: 89 FLCSMCAYKMVRNNSRYNRILYVALVAAMVIPFQAIMIPLVQIVSRLGVMDSTAGLILAY 148 + SM A+KMVR R+++IL++ V+AMVIPFQ +MIPL+++ L + +S GLI+ Y Sbjct: 86 IISSMAAWKMVRTPGRFSKILFILFVSAMVIPFQTVMIPLMKLGGALNMTNSIPGLIMMY 145 Query: 149 LGFGAPMTVFLLHGFVKSVPIDIEEASRVDGSSPYGTFFRVVLPLMQPIIVTVIILNTLW 208 GFG P+++FL HGFVK+VP +IEE++ +DG S +G F+R+V PL++PI VTV+ILNTLW Sbjct: 146 FGFGVPLSLFLYHGFVKTVPREIEESALIDGCSQFGVFWRIVFPLLKPITVTVVILNTLW 205 Query: 209 IWNDYLMPSLILQSPALRTIPIATYTFFGQYTKQWDLALPGLVLGITPVVLFFLLMQKYI 268 IWND+L+P L+LQ LRTIP+AT +FF QYTKQWD+ L LVLGITPV++FFL +QK+I Sbjct: 206 IWNDFLLPLLVLQDAELRTIPLATSSFFAQYTKQWDMGLAALVLGITPVIIFFLFLQKHI 265 Query: 269 IEGIAQGSVK 278 I+GIA GS+K Sbjct: 266 IKGIASGSIK 275 >C4L2X2.1 C4L2X2_EXISA Binding-protein-dependent transport systems inner membrane component Length = 300 Score = 284 bits (727), Expect = 5e-75, Method: Compositional matrix adjust. Identities = 134/251 (53%), Positives = 187/251 (74%) Query: 28 VPFYFLLANSVKSYSEILSDSSALPTVFQWNNYAEAWKATDFPHAFXXXXXXXXXXXXXX 87 VPFY+++ANS KS +EI +++SALP + +NY EAW+A ++ F Sbjct: 50 VPFYYVVANSFKSMAEIFTNTSALPNEWLTSNYTEAWEAMNYGRVFLNSLLITVGANAVI 109 Query: 88 AFLCSMCAYKMVRNNSRYNRILYVALVAAMVIPFQAIMIPLVQIVSRLGVMDSTAGLILA 147 SM A+K+VR + +++ VAAMVIPFQ+IMIPLV++ S LG+++S GLI+ Sbjct: 110 VIFTSMAAWKLVRTKHWISTMIFFLFVAAMVIPFQSIMIPLVKVSSILGLLNSHWGLIVM 169 Query: 148 YLGFGAPMTVFLLHGFVKSVPIDIEEASRVDGSSPYGTFFRVVLPLMQPIIVTVIILNTL 207 YLGFG+ ++VFL HGF+KS+P +IEEA+ +DG S +G F+R+V PL++PI VT++ILN+L Sbjct: 170 YLGFGSGISVFLYHGFMKSIPEEIEEAAIIDGCSTWGVFWRIVFPLLKPITVTIVILNSL 229 Query: 208 WIWNDYLMPSLILQSPALRTIPIATYTFFGQYTKQWDLALPGLVLGITPVVLFFLLMQKY 267 WIWND+L+PSL+L+ LRTIP+AT+ FFGQYTKQWDLAL GLVLGI P+++FF MQK+ Sbjct: 230 WIWNDFLLPSLVLRDVELRTIPLATFYFFGQYTKQWDLALAGLVLGIVPLLVFFFGMQKH 289 Query: 268 IIEGIAQGSVK 278 II+GI GS+K Sbjct: 290 IIKGITSGSIK 300 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.327 0.141 0.431 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,442,224,398 Number of extensions: 55184135 Number of successful extensions: 197971 Number of sequences better than 1.0e-05: 6079 Number of HSP's gapped: 191830 Number of HSP's successfully gapped: 6079 Length of query: 279 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 145 Effective length of database: 1,798,280,193 Effective search space: 260750627985 Effective search space used: 260750627985 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 130 (54.7 bits)