BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0105.0003.p (293 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K4S3.1 B3K4S3_9BACI Binding-protein-dependent transport system... 403 e-110 B3KDP9.1 B3KDP9_9BACI Binding-protein-dependent transport system... 379 e-103 B1YJN1.1 B1YJN1_EXIS2 Binding-protein-dependent transport system... 361 5e-98 C4L2X1.1 C4L2X1_EXISA Binding-protein-dependent transport system... 340 6e-92 A6CLU6.1 A6CLU6_9BACI Multiple sugar-binding transport system pe... 328 3e-88 >B3K4S3.1 B3K4S3_9BACI Binding-protein-dependent transport systems inner membrane component Length = 293 Score = 403 bits (1036), Expect = e-110, Method: Compositional matrix adjust. Identities = 190/292 (65%), Positives = 238/292 (81%) Query: 1 MDLKRRSRLMQQFIFVGPTSXXXXXXXXXXXXXXXYYSFTSWNGISRHVGWTGLRNYIHI 60 M+ K+ S L+QQF+FVGP++ YYSFT+WNG+S + + G N++ I Sbjct: 1 MNRKKSSALLQQFLFVGPSTIFFILIMIIPFLLGLYYSFTNWNGVSSKIDFVGFDNFVTI 60 Query: 61 FTKDPSFLNSFWFTAKFTFFGLVLTNLLGFMLAYVLTRKLFTRNVLRTVFFVPHVIGGLL 120 FT D F ++FWFT +FT G++LTNLLGF+LAY LT+ L TRNVLRT+FF+P+VIGGLL Sbjct: 61 FTNDDKFRDAFWFTTRFTVLGVILTNLLGFILAYFLTKPLKTRNVLRTIFFMPNVIGGLL 120 Query: 121 LGFIWQFIFVRGFASVGQATGWSFFNLPWLGTGATSFWAIVIVFVWQNAGYLMVIYISAI 180 LGFIWQFIFV+GFA++G AT FFNLPWLGT T+FWAIVIVFVWQ AGYLMVIYIS++ Sbjct: 121 LGFIWQFIFVKGFAAIGNATNLGFFNLPWLGTKGTAFWAIVIVFVWQTAGYLMVIYISSL 180 Query: 181 NNVPQSLIEASKVDGAGRMQALRHVTIPLVMPAVTVCLFLSISWSFKLFDLNLSLTKGGP 240 NNVP+ ++EA+++DGA R Q LR + IPLVMPAVTVCLFL+ISWSFK+FDLNLSLTKGGP Sbjct: 181 NNVPKDILEAAEIDGASRGQVLRSIIIPLVMPAVTVCLFLAISWSFKMFDLNLSLTKGGP 240 Query: 241 FKATESVALNIYNEAYTISRFGMGSAKAMIFFVIVAVISLLQVRATKKREVE 292 F +TESVA+NIYNEAYT +R G+G+AKA+IFF++VA+I+ LQVR TK +EVE Sbjct: 241 FGSTESVAMNIYNEAYTNNRLGLGTAKAVIFFIVVAIITSLQVRFTKSKEVE 292 >B3KDP9.1 B3KDP9_9BACI Binding-protein-dependent transport systems inner membrane component Length = 293 Score = 379 bits (973), Expect = e-103, Method: Compositional matrix adjust. Identities = 174/292 (59%), Positives = 232/292 (79%) Query: 1 MDLKRRSRLMQQFIFVGPTSXXXXXXXXXXXXXXXYYSFTSWNGISRHVGWTGLRNYIHI 60 M+ KR + L QQ +++GP YYSFT WNG+S +V W GL N+ I Sbjct: 1 MNSKRTAALTQQLVYIGPALLFFGITIIIPFVMGMYYSFTDWNGVSGNVEWVGLDNFKQI 60 Query: 61 FTKDPSFLNSFWFTAKFTFFGLVLTNLLGFMLAYVLTRKLFTRNVLRTVFFVPHVIGGLL 120 FT D +F SFWFT KFT G++LTNL+GF LAY LT+ + RN LRT+FF+P+VIGGLL Sbjct: 61 FTNDSAFAQSFWFTTKFTIVGVLLTNLVGFFLAYFLTKNIRARNWLRTIFFMPNVIGGLL 120 Query: 121 LGFIWQFIFVRGFASVGQATGWSFFNLPWLGTGATSFWAIVIVFVWQNAGYLMVIYISAI 180 LGFIWQFIF++GFA+VG+ATG FFNLPWLG T FW I++VFVWQ++GYLMVIYI++I Sbjct: 121 LGFIWQFIFIKGFATVGEATGIPFFNLPWLGDEVTGFWGIIMVFVWQSSGYLMVIYIASI 180 Query: 181 NNVPQSLIEASKVDGAGRMQALRHVTIPLVMPAVTVCLFLSISWSFKLFDLNLSLTKGGP 240 NV + ++EA+++DGA R Q L+ + +PL+MPAVTVCLFL+ISWSFK+FDLNLSLTKGGP Sbjct: 181 TNVSKEVMEAAEIDGANRFQVLKSIIVPLIMPAVTVCLFLAISWSFKMFDLNLSLTKGGP 240 Query: 241 FKATESVALNIYNEAYTISRFGMGSAKAMIFFVIVAVISLLQVRATKKREVE 292 +++TES+A+N+YNEA+ +R+G+G+AK++IFF++VAVI+L+QVR TK++EVE Sbjct: 241 YRSTESLAMNVYNEAFLNNRYGLGTAKSLIFFLVVAVITLIQVRLTKQKEVE 292 >B1YJN1.1 B1YJN1_EXIS2 Binding-protein-dependent transport systems inner membrane component Length = 296 Score = 361 bits (926), Expect = 5e-98, Method: Compositional matrix adjust. Identities = 169/289 (58%), Positives = 219/289 (75%) Query: 4 KRRSRLMQQFIFVGPTSXXXXXXXXXXXXXXXYYSFTSWNGISRHVGWTGLRNYIHIFTK 63 K+ R ++ ++FVGP YSFT WNGI+ + W G NY+ +FT Sbjct: 7 KKVKRGLEFWMFVGPVFLVFAVIVLVPFFNGVMYSFTDWNGITGELNWIGFDNYVRLFTV 66 Query: 64 DPSFLNSFWFTAKFTFFGLVLTNLLGFMLAYVLTRKLFTRNVLRTVFFVPHVIGGLLLGF 123 D F SFW T K+T +VLTNL+GF+LA++LT+ + TRN LRT+FF+P++IGGL+LGF Sbjct: 67 DEQFQQSFWLTTKYTVVAVVLTNLVGFILAFLLTQNIRTRNFLRTIFFMPNLIGGLILGF 126 Query: 124 IWQFIFVRGFASVGQATGWSFFNLPWLGTGATSFWAIVIVFVWQNAGYLMVIYISAINNV 183 +WQFI+V+GFAS+G+ TGWS F LPWLG T FW IVIV +WQ GY+MVIYI+A+ NV Sbjct: 127 VWQFIYVKGFASIGELTGWSLFELPWLGDARTGFWGIVIVSIWQGGGYIMVIYIAALQNV 186 Query: 184 PQSLIEASKVDGAGRMQALRHVTIPLVMPAVTVCLFLSISWSFKLFDLNLSLTKGGPFKA 243 PQ LIEA+K+DGA R+ LR++TIPL+MP+VT+CLFL+ISWSFKLFD NLSLT GGPFK+ Sbjct: 187 PQELIEAAKIDGANRLSTLRNITIPLIMPSVTICLFLTISWSFKLFDTNLSLTNGGPFKS 246 Query: 244 TESVALNIYNEAYTISRFGMGSAKAMIFFVIVAVISLLQVRATKKREVE 292 TE +ALNIY E++T + G+GSAKA+IFFV+VA I++ QV TKKREVE Sbjct: 247 TEMLALNIYKESFTNNNLGLGSAKAIIFFVVVAAITVTQVYLTKKREVE 295 >C4L2X1.1 C4L2X1_EXISA Binding-protein-dependent transport systems inner membrane component Length = 301 Score = 340 bits (873), Expect = 6e-92, Method: Compositional matrix adjust. Identities = 160/290 (55%), Positives = 215/290 (74%), Gaps = 1/290 (0%) Query: 4 KRRSRLMQQFI-FVGPTSXXXXXXXXXXXXXXXYYSFTSWNGISRHVGWTGLRNYIHIFT 62 +R + FI FVGP YYSFT WNG++ + + GL NY +F Sbjct: 11 RRNWKKPASFIAFVGPAFLAFVAIVLIPFFNGIYYSFTDWNGVTGELNFVGLDNYHRLFF 70 Query: 63 KDPSFLNSFWFTAKFTFFGLVLTNLLGFMLAYVLTRKLFTRNVLRTVFFVPHVIGGLLLG 122 +D F SFW T K+T ++LTN++GF LA +LT + TRN LRT+FF+P++IGGL+LG Sbjct: 71 EDEQFRASFWITTKYTLVSVLLTNIVGFSLALLLTMNIKTRNFLRTIFFMPNLIGGLILG 130 Query: 123 FIWQFIFVRGFASVGQATGWSFFNLPWLGTGATSFWAIVIVFVWQNAGYLMVIYISAINN 182 FIWQFI+V+GFAS+G TGWS F LPWLG T+FW IVIV +WQ GY+MVIYI+A+ N Sbjct: 131 FIWQFIYVKGFASIGALTGWSLFELPWLGDAQTAFWGIVIVAIWQGGGYVMVIYIAALQN 190 Query: 183 VPQSLIEASKVDGAGRMQALRHVTIPLVMPAVTVCLFLSISWSFKLFDLNLSLTKGGPFK 242 VP L+EA+++DGA R++ LRH+T+P++MP++T+CLFL+ISWSFK+FD NLSLT GGPFK Sbjct: 191 VPTDLMEAARIDGANRLKMLRHITLPMIMPSITICLFLTISWSFKVFDTNLSLTNGGPFK 250 Query: 243 ATESVALNIYNEAYTISRFGMGSAKAMIFFVIVAVISLLQVRATKKREVE 292 +TE +ALNIY E++ + +G+GSAKA+IFF++VA I++ QV TKKREVE Sbjct: 251 STEMLALNIYTESFVNNNYGLGSAKAVIFFLVVAAITVTQVYVTKKREVE 300 >A6CLU6.1 A6CLU6_9BACI Multiple sugar-binding transport system permease Length = 313 Score = 328 bits (842), Expect = 3e-88, Method: Compositional matrix adjust. Identities = 157/288 (54%), Positives = 206/288 (71%) Query: 5 RRSRLMQQFIFVGPTSXXXXXXXXXXXXXXXYYSFTSWNGISRHVGWTGLRNYIHIFTKD 64 R ++ FVGP YYSFTSWNG+S V W G+ NY IF+ D Sbjct: 25 RYKSILTYAAFVGPALLFFLVIQIIPFLMGLYYSFTSWNGVSSAVEWVGIENYKKIFSDD 84 Query: 65 PSFLNSFWFTAKFTFFGLVLTNLLGFMLAYVLTRKLFTRNVLRTVFFVPHVIGGLLLGFI 124 P F NSF FT KF F ++++NLLGF A +L L TRN+LRTVFF+P+VIGGLLLGFI Sbjct: 85 PVFFNSFMFTTKFMFAAVLISNLLGFSFALLLNAALKTRNILRTVFFIPNVIGGLLLGFI 144 Query: 125 WQFIFVRGFASVGQATGWSFFNLPWLGTGATSFWAIVIVFVWQNAGYLMVIYISAINNVP 184 WQFIFV+GFAS+G T FF +PWLG T+FW IVIVF WQ +GY+MVIY++A+ V Sbjct: 145 WQFIFVKGFASLGNMTDIGFFKMPWLGDETTAFWGIVIVFAWQISGYMMVIYVAALQGVD 204 Query: 185 QSLIEASKVDGAGRMQALRHVTIPLVMPAVTVCLFLSISWSFKLFDLNLSLTKGGPFKAT 244 SL+EA+K+DGA L + IPL++PA T+C FL+IS +FK+FDLN+SLT GGPF +T Sbjct: 205 NSLLEAAKMDGASAWAVLTRIIIPLILPAFTICFFLTISMAFKIFDLNISLTGGGPFNST 264 Query: 245 ESVALNIYNEAYTISRFGMGSAKAMIFFVIVAVISLLQVRATKKREVE 292 +SVA+NIY EA+ +R+G+G+AK+++FFV+VA+ + +QV TKK+EVE Sbjct: 265 QSVAINIYQEAFQNNRYGLGTAKSILFFVVVAIFTTVQVMVTKKKEVE 312 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.331 0.142 0.449 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,562,974,263 Number of extensions: 61947822 Number of successful extensions: 223230 Number of sequences better than 1.0e-05: 6073 Number of HSP's gapped: 218056 Number of HSP's successfully gapped: 6077 Length of query: 293 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 159 Effective length of database: 1,798,280,193 Effective search space: 285926550687 Effective search space used: 285926550687 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 130 (54.7 bits)